RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 HIST1H2BJP06899 126 aa11.59□□□□□ -0.55
SHMT1-209ENST00000582653 HIST1H2BOP23527 126 aa11.59□□□□□ -0.55
SHMT1-209ENST00000582653 HIST1H2BBP33778 126 aa11.59□□□□□ -0.55
SHMT1-209ENST00000582653 HIST1H2BDP58876 126 aa11.59□□□□□ -0.55
SHMT1-209ENST00000582653 HIST1H2BCP62807 126 aa11.59□□□□□ -0.55
SHMT1-209ENST00000582653 MOBPQ13875 183 aa11.59□□□□□ -0.55
SHMT1-209ENST00000582653 HIST2H2BEQ16778 126 aa11.59□□□□□ -0.55
SHMT1-209ENST00000582653 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.59□□□□□ -0.55
SHMT1-209ENST00000582653 HIST1H2BHQ93079 126 aa11.59□□□□□ -0.55
SHMT1-209ENST00000582653 HIST1H2BNQ99877 126 aa11.59□□□□□ -0.55
SHMT1-209ENST00000582653 HIST1H2BMQ99879 126 aa11.59□□□□□ -0.55
SHMT1-209ENST00000582653 TRAV23DV6A0A075B6W5 121 aa11.58□□□□□ -0.56
SHMT1-209ENST00000582653 KRTAP9-2Q9BYQ4 174 aa11.58□□□□□ -0.56
SHMT1-209ENST00000582653 ZNF73O43830 326 aaPredicted RBP11.55□□□□□ -0.56
SHMT1-209ENST00000582653 SSBP3-AS1Q7Z2R9 100 aa11.54□□□□□ -0.56
SHMT1-209ENST00000582653 LITAFQ99732 161 aa11.54□□□□□ -0.56
SHMT1-209ENST00000582653 JOSD1Q15040 202 aaPredicted RBP11.53□□□□□ -0.56
SHMT1-209ENST00000582653 KRTAP13-3Q3SY46 172 aa11.53□□□□□ -0.56
SHMT1-209ENST00000582653 LINC01545Q5VT33 79 aa11.53□□□□□ -0.56
SHMT1-209ENST00000582653 ST20-AS1Q8NBB2 130 aa11.52□□□□□ -0.57
SHMT1-209ENST00000582653 LINC00308Q8TCZ7 52 aa11.52□□□□□ -0.57
SHMT1-209ENST00000582653 TTTY13Q9BZ97 58 aa11.51□□□□□ -0.57
SHMT1-209ENST00000582653 PET117Q6UWS5 81 aa11.5□□□□□ -0.57
SHMT1-209ENST00000582653 OR13C6PQ8NH95 151 aa11.5□□□□□ -0.57
SHMT1-209ENST00000582653 RPS29P62273 56 aaKnown RBP11.49□□□□□ -0.57
SHMT1-209ENST00000582653 Q8N377 158 aa11.49□□□□□ -0.57
SHMT1-209ENST00000582653 SPANXCQ9NY87 97 aa11.49□□□□□ -0.57
SHMT1-209ENST00000582653 ZNF815PA8K554 130 aa11.48□□□□□ -0.57
SHMT1-209ENST00000582653 TIMM17BO60830 172 aa11.48□□□□□ -0.57
SHMT1-209ENST00000582653 C3orf79P0CE67 100 aa11.47□□□□□ -0.57
SHMT1-209ENST00000582653 ASB16-AS1Q495Z4 193 aa11.47□□□□□ -0.57
SHMT1-209ENST00000582653 C9orf153Q5TBE3 101 aa11.47□□□□□ -0.57
SHMT1-209ENST00000582653 HINT1P49773 126 aaPredicted RBP11.46□□□□□ -0.57
SHMT1-209ENST00000582653 CBY1Q9Y3M2 126 aa11.44□□□□□ -0.58
SHMT1-209ENST00000582653 KRTDAPP60985 99 aa11.43□□□□□ -0.58
SHMT1-209ENST00000582653 SLC25A20O43772 301 aa11.42□□□□□ -0.58
SHMT1-209ENST00000582653 SPANXDQ9BXN6 97 aa11.41□□□□□ -0.58
SHMT1-209ENST00000582653 C5orf52A6NGY3 159 aa11.4□□□□□ -0.58
SHMT1-209ENST00000582653 SEC61BP60468 96 aaKnown RBP11.4□□□□□ -0.58
SHMT1-209ENST00000582653 COA6Q5JTJ3 125 aaKnown RBP11.4□□□□□ -0.58
SHMT1-209ENST00000582653 SPRR1BP22528 89 aa11.38□□□□□ -0.59
SHMT1-209ENST00000582653 C6orf99Q4VX62 202 aa11.38□□□□□ -0.59
SHMT1-209ENST00000582653 DHRS4-AS1Q9P1J3 65 aa11.38□□□□□ -0.59
SHMT1-209ENST00000582653 ANKRD39Q53RE8 183 aa11.37□□□□□ -0.59
SHMT1-209ENST00000582653 LINC00518Q8N0U6 118 aa11.37□□□□□ -0.59
SHMT1-209ENST00000582653 COX7BP24311 80 aa11.36□□□□□ -0.59
SHMT1-209ENST00000582653 SCGB1D4Q6XE38 83 aa11.36□□□□□ -0.59
SHMT1-209ENST00000582653 KRTAP4-1Q9BYQ7 146 aa11.36□□□□□ -0.59
SHMT1-209ENST00000582653 ELOF1P60002 83 aaKnown RBP11.35□□□□□ -0.59
SHMT1-209ENST00000582653 HRCT1Q6UXD1 115 aa11.35□□□□□ -0.59
SHMT1-209ENST00000582653 ATOH7Q8N100 152 aa11.35□□□□□ -0.59
SHMT1-209ENST00000582653 DEFB105AQ8NG35 78 aa11.33□□□□□ -0.6
SHMT1-209ENST00000582653 C20orf202A1L168 122 aa11.32□□□□□ -0.6
SHMT1-209ENST00000582653 LINC01547P58512 204 aaPredicted RBP11.32□□□□□ -0.6
SHMT1-209ENST00000582653 XP32Q5T750 250 aa11.32□□□□□ -0.6
SHMT1-209ENST00000582653 SLC25A34Q6PIV7 304 aa11.32□□□□□ -0.6
SHMT1-209ENST00000582653 LAMTOR3Q9UHA4 124 aa11.32□□□□□ -0.6
SHMT1-209ENST00000582653 TAL2Q16559 108 aa11.31□□□□□ -0.6
SHMT1-209ENST00000582653 Q1RN00 199 aa11.3□□□□□ -0.6
SHMT1-209ENST00000582653 PCP2Q8IVA1 136 aa11.3□□□□□ -0.6
SHMT1-209ENST00000582653 A6NDN8 102 aa11.29□□□□□ -0.6
SHMT1-209ENST00000582653 MUSTN1Q8IVN3 82 aa11.29□□□□□ -0.6
SHMT1-209ENST00000582653 IFITM1P13164 125 aa11.27□□□□□ -0.61
SHMT1-209ENST00000582653 TRBV7-6A0A0J9YX20 115 aa11.26□□□□□ -0.61
SHMT1-209ENST00000582653 LIMD2Q9BT23 127 aa11.26□□□□□ -0.61
SHMT1-209ENST00000582653 KRTAP9-6A0A140TA67 174 aa11.25□□□□□ -0.61
SHMT1-209ENST00000582653 TEX49A0A1B0GTD5 131 aa11.25□□□□□ -0.61
SHMT1-209ENST00000582653 COPS9Q8WXC6 57 aa11.25□□□□□ -0.61
SHMT1-209ENST00000582653 Q6ZVH6 145 aa11.24□□□□□ -0.61
SHMT1-209ENST00000582653 A0A1B0GWB2 263 aa11.23□□□□□ -0.61
SHMT1-209ENST00000582653 SMIM29Q86T20 159 aa11.23□□□□□ -0.61
SHMT1-209ENST00000582653 PRO1933Q9H354 126 aa11.22□□□□□ -0.61
SHMT1-209ENST00000582653 H7C2G1 150 aa11.21□□□□□ -0.61
SHMT1-209ENST00000582653 A0A0G2JQZ4 141 aa11.2□□□□□ -0.62
SHMT1-209ENST00000582653 C9orf92A6NGG3 77 aa11.19□□□□□ -0.62
SHMT1-209ENST00000582653 SMIM11BQ8TCY0 68 aa11.19□□□□□ -0.62
SHMT1-209ENST00000582653 IGLV5-48A0A075B6I7 105 aa11.18□□□□□ -0.62
SHMT1-209ENST00000582653 AKR1D1P51857 326 aa11.18□□□□□ -0.62
SHMT1-209ENST00000582653 CD164Q04900 197 aa11.18□□□□□ -0.62
SHMT1-209ENST00000582653 TRAV13-2A0A0B4J235 113 aa11.17□□□□□ -0.62
SHMT1-209ENST00000582653 SNRPEP62304 92 aaKnown RBP11.16□□□□□ -0.62
SHMT1-209ENST00000582653 HIST3H2BBQ8N257 126 aa11.16□□□□□ -0.62
SHMT1-209ENST00000582653 A4D1N5 150 aa11.15□□□□□ -0.62
SHMT1-209ENST00000582653 HIST1H2BLQ99880 126 aa11.14□□□□□ -0.63
SHMT1-209ENST00000582653 LCE2CQ5TA81 110 aa11.13□□□□□ -0.63
SHMT1-209ENST00000582653 LCE2DQ5TA82 110 aaPredicted RBP11.13□□□□□ -0.63
SHMT1-209ENST00000582653 PCOTHQ58A44 107 aa11.12□□□□□ -0.63
SHMT1-209ENST00000582653 S100A2P29034 98 aa11.11□□□□□ -0.63
SHMT1-209ENST00000582653 C1orf195Q5TG92 126 aa11.1□□□□□ -0.63
SHMT1-209ENST00000582653 NHP2Q9NX24 153 aaKnown RBP11.1□□□□□ -0.63
SHMT1-209ENST00000582653 Q5XG85 94 aa11.09□□□□□ -0.63
SHMT1-209ENST00000582653 KRTAP19-2Q3LHN2 52 aa11.08□□□□□ -0.64
SHMT1-209ENST00000582653 IGLV8-61A0A075B6I0 122 aa11.07□□□□□ -0.64
SHMT1-209ENST00000582653 HSBP1L1C9JCN9 74 aa11.07□□□□□ -0.64
SHMT1-209ENST00000582653 VAMP3Q15836 100 aa11.06□□□□□ -0.64
SHMT1-209ENST00000582653 LINC00575Q6W349 94 aa11.06□□□□□ -0.64
SHMT1-209ENST00000582653 Q6ZQY7 126 aa11.02□□□□□ -0.65
SHMT1-209ENST00000582653 hADV29S1A0JD25 119 aa11.01□□□□□ -0.65
SHMT1-209ENST00000582653 S100A6P06703 90 aa11.01□□□□□ -0.65
SHMT1-209ENST00000582653 C12orf57Q99622 126 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms