RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 NISCHQ9Y2I1 1504 aa50.87■■■■■ 5.73
SHMT1-209ENST00000582653 CCDC180Q9P1Z9 1646 aa45.48■■■■■ 4.87
SHMT1-209ENST00000582653 ABCC9O60706 1549 aa45.41■■■■■ 4.86
SHMT1-209ENST00000582653 RB1CC1Q8TDY2 1594 aa43.28■■■■■ 4.52
SHMT1-209ENST00000582653 NACADO15069 1562 aa43.05■■■■■ 4.48
SHMT1-209ENST00000582653 DCAF8L2P0C7V8 631 aa42.98■■■■■ 4.47
SHMT1-209ENST00000582653 DNAJC5BQ9UF47 199 aa42.59■■■■■ 4.41
SHMT1-209ENST00000582653 MYO15BQ96JP2 1530 aa42.55■■■■■ 4.4
SHMT1-209ENST00000582653 PABPN1Q86U42 306 aaKnown RBP eCLIP42.38■■■■■ 4.37
SHMT1-209ENST00000582653 UNC13AQ9UPW8 1703 aa42.2■■■■■ 4.35
SHMT1-209ENST00000582653 ZCCHC6Q5VYS8 1495 aaKnown RBP42.14■■■■■ 4.34
SHMT1-209ENST00000582653 DCAF1Q9Y4B6 1507 aa42.04■■■■■ 4.32
SHMT1-209ENST00000582653 BICRAQ9NZM4 1560 aa42.01■■■■■ 4.32
SHMT1-209ENST00000582653 SHROOM4Q9ULL8 1493 aa41.47■■■■■ 4.23
SHMT1-209ENST00000582653 SCRIBQ14160 1630 aa41.44■■■■■ 4.22
SHMT1-209ENST00000582653 CC2D2AQ9P2K1 1620 aa41■■■■■ 4.15
SHMT1-209ENST00000582653 EIF4G1Q04637 1599 aaKnown RBP40.96■■■■■ 4.15
SHMT1-209ENST00000582653 CECR2Q9BXF3 1484 aa40.9■■■■■ 4.14
SHMT1-209ENST00000582653 NCAPD3P42695 1498 aa39.81■■■■□ 3.96
SHMT1-209ENST00000582653 ATAD2BQ9ULI0 1458 aa39.66■■■■□ 3.94
SHMT1-209ENST00000582653 SMARCA4P51532 1647 aa39.58■■■■□ 3.93
SHMT1-209ENST00000582653 SMARCA2P51531 1590 aa39.52■■■■□ 3.92
SHMT1-209ENST00000582653 BAZ1AQ9NRL2 1556 aaPredicted RBP39.45■■■■□ 3.91
SHMT1-209ENST00000582653 HMGXB3Q12766 1538 aa39.42■■■■□ 3.9
SHMT1-209ENST00000582653 PEG3Q9GZU2 1588 aa39.25■■■■□ 3.87
SHMT1-209ENST00000582653 BAZ1BQ9UIG0 1483 aaKnown RBP39.24■■■■□ 3.87
SHMT1-209ENST00000582653 ERCC6Q03468 1493 aa39.18■■■■□ 3.86
SHMT1-209ENST00000582653 MROH2BQ7Z745 1585 aa39.17■■■■□ 3.86
SHMT1-209ENST00000582653 CUX2O14529 1486 aa39.09■■■■□ 3.85
SHMT1-209ENST00000582653 NESP48681 1621 aa39.04■■■■□ 3.84
SHMT1-209ENST00000582653 DNAJC5Q9H3Z4 198 aa39.03■■■■□ 3.84
SHMT1-209ENST00000582653 LAMC3Q9Y6N6 1575 aa38.81■■■■□ 3.8
SHMT1-209ENST00000582653 WIZO95785 1651 aa38.68■■■■□ 3.78
SHMT1-209ENST00000582653 PDS5BQ9NTI5 1447 aa38.64■■■■□ 3.78
SHMT1-209ENST00000582653 CADPSQ9ULU8 1353 aa38.61■■■■□ 3.77
SHMT1-209ENST00000582653 THOC2Q8NI27 1593 aaKnown RBP38.54■■■■□ 3.76
SHMT1-209ENST00000582653 RSF1Q96T23 1441 aaPredicted RBP38.47■■■■□ 3.75
SHMT1-209ENST00000582653 KIF21AQ7Z4S6 1674 aa38.46■■■■□ 3.75
SHMT1-209ENST00000582653 MRC2Q9UBG0 1479 aa38.22■■■■□ 3.71
SHMT1-209ENST00000582653 TOP2AP11388 1531 aaKnown RBP38.2■■■■□ 3.71
SHMT1-209ENST00000582653 CFTRP13569 1480 aa38.16■■■■□ 3.7
SHMT1-209ENST00000582653 WDR62O43379 1518 aa38.11■■■■□ 3.69
SHMT1-209ENST00000582653 CEP164Q9UPV0 1460 aa38.1■■■■□ 3.69
SHMT1-209ENST00000582653 FANCD2Q9BXW9 1451 aa38.09■■■■□ 3.69
SHMT1-209ENST00000582653 CCDC88BA6NC98 1476 aa37.84■■■■□ 3.65
SHMT1-209ENST00000582653 URB2Q14146 1524 aaKnown RBP37.76■■■■□ 3.63
SHMT1-209ENST00000582653 PRDM2Q13029 1718 aa37.62■■■■□ 3.61
SHMT1-209ENST00000582653 OSCARQ8IYS5 282 aa37.47■■■■□ 3.59
SHMT1-209ENST00000582653 ABCC8Q09428 1581 aa37.38■■■■□ 3.58
SHMT1-209ENST00000582653 TOPBP1Q92547 1522 aa37.38■■■■□ 3.57
SHMT1-209ENST00000582653 IFT140Q96RY7 1462 aa37.37■■■■□ 3.57
SHMT1-209ENST00000582653 TRIM41Q8WV44 630 aa37.3■■■■□ 3.56
SHMT1-209ENST00000582653 ZNF608Q9ULD9 1512 aaPredicted RBP37.27■■■■□ 3.56
SHMT1-209ENST00000582653 DNMBPQ6XZF7 1577 aa37.23■■■■□ 3.55
SHMT1-209ENST00000582653 SUPT5HO00267 1087 aaKnown RBP37.08■■■■□ 3.53
SHMT1-209ENST00000582653 TARBP1Q13395 1621 aaKnown RBP37.02■■■■□ 3.52
SHMT1-209ENST00000582653 POLA1P09884 1462 aaPredicted RBP37.01■■■■□ 3.52
SHMT1-209ENST00000582653 AQRO60306 1485 aaKnown RBP eCLIP37.01■■■■□ 3.51
SHMT1-209ENST00000582653 EIF4G3O43432 1585 aaKnown RBP37■■■■□ 3.51
SHMT1-209ENST00000582653 SOGA1O94964 1423 aa36.93■■■■□ 3.5
SHMT1-209ENST00000582653 RAD54L2Q9Y4B4 1467 aa36.89■■■■□ 3.5
SHMT1-209ENST00000582653 TDRD9Q8NDG6 1382 aaKnown RBP36.81■■■■□ 3.48
SHMT1-209ENST00000582653 FGD5Q6ZNL6 1462 aa36.79■■■■□ 3.48
SHMT1-209ENST00000582653 CUX1P39880 1505 aa36.78■■■■□ 3.48
SHMT1-209ENST00000582653 FBLN2P98095 1184 aa36.77■■■■□ 3.48
SHMT1-209ENST00000582653 RIMBP3CA6NJZ7 1639 aa36.77■■■■□ 3.48
SHMT1-209ENST00000582653 RIMBP3BA6NNM3 1639 aa36.77■■■■□ 3.48
SHMT1-209ENST00000582653 RIMBP3Q9UFD9 1639 aa36.77■■■■□ 3.48
SHMT1-209ENST00000582653 ARHGEF11O15085 1522 aa36.69■■■■□ 3.46
SHMT1-209ENST00000582653 CHD1O14646 1710 aa36.68■■■■□ 3.46
SHMT1-209ENST00000582653 WDR97A6NE52 1622 aa36.66■■■■□ 3.46
SHMT1-209ENST00000582653 CYB5RLQ6IPT4 315 aa36.56■■■■□ 3.44
SHMT1-209ENST00000582653 CHMP7Q8WUX9 453 aaPredicted RBP36.56■■■■□ 3.44
SHMT1-209ENST00000582653 SNAPC4Q5SXM2 1469 aa36.56■■■■□ 3.44
SHMT1-209ENST00000582653 GRIN2BQ13224 1484 aa36.54■■■■□ 3.44
SHMT1-209ENST00000582653 MAGI1Q96QZ7 1491 aaPredicted RBP36.5■■■■□ 3.43
SHMT1-209ENST00000582653 GAPVD1Q14C86 1478 aa36.43■■■■□ 3.42
SHMT1-209ENST00000582653 ABCA10Q8WWZ4 1543 aa36.41■■■■□ 3.42
SHMT1-209ENST00000582653 SYNJ2O15056 1496 aa36.39■■■■□ 3.42
SHMT1-209ENST00000582653 ARAP1Q96P48 1450 aa36.35■■■■□ 3.41
SHMT1-209ENST00000582653 WRNQ14191 1432 aaPredicted RBP eCLIP36.33■■■■□ 3.41
SHMT1-209ENST00000582653 SYNJ1O43426 1573 aa36.32■■■■□ 3.41
SHMT1-209ENST00000582653 CLASP1Q7Z460 1538 aa36.32■■■■□ 3.4
SHMT1-209ENST00000582653 PBRM1Q86U86 1689 aa36.27■■■■□ 3.4
SHMT1-209ENST00000582653 ABCA5Q8WWZ7 1642 aa36.26■■■■□ 3.4
SHMT1-209ENST00000582653 TOP2BQ02880 1626 aa36.23■■■■□ 3.39
SHMT1-209ENST00000582653 BIVM-ERCC5R4GMW8 1640 aa36.19■■■■□ 3.38
SHMT1-209ENST00000582653 TRHP20396 242 aaPredicted RBP36.08■■■■□ 3.37
SHMT1-209ENST00000582653 GRIN2AQ12879 1464 aa36.05■■■■□ 3.36
SHMT1-209ENST00000582653 FHAD1B1AJZ9 1412 aa35.99■■■■□ 3.35
SHMT1-209ENST00000582653 ADAMTS12P58397 1594 aa35.96■■■■□ 3.35
SHMT1-209ENST00000582653 ERICH3Q5RHP9 1530 aa35.95■■■■□ 3.35
SHMT1-209ENST00000582653 NUP160Q12769 1436 aa35.94■■■■□ 3.34
SHMT1-209ENST00000582653 CEP170Q5SW79 1584 aa35.86■■■■□ 3.33
SHMT1-209ENST00000582653 ERCC6L2Q5T890 1561 aa35.76■■■■□ 3.32
SHMT1-209ENST00000582653 SHROOM2Q13796 1616 aa35.71■■■■□ 3.31
SHMT1-209ENST00000582653 JPH4Q96JJ6 628 aa35.7■■■■□ 3.31
SHMT1-209ENST00000582653 IGF1RP08069 1367 aa35.63■■■■□ 3.29
SHMT1-209ENST00000582653 PRG4Q92954 1404 aaPredicted RBP35.6■■■■□ 3.29
SHMT1-209ENST00000582653 KIF27Q86VH2 1401 aa35.59■■■■□ 3.29
Retrieved 100 of 20,778 RNA–protein pairs in 151.1 ms