RNA–Protein interactions for RNA: ENST00000576218.5

SMG6-220, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 902 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-220ENST00000576218 HIST1H2BLQ99880 126 aa9□□□□□ -0.97
SMG6-220ENST00000576218 EIF4EBP3O60516 100 aaPredicted RBP8.99□□□□□ -0.97
SMG6-220ENST00000576218 IGLV6-57P01721 117 aa8.99□□□□□ -0.97
SMG6-220ENST00000576218 SNRPEP62304 92 aaKnown RBP8.99□□□□□ -0.97
SMG6-220ENST00000576218 JOSD1Q15040 202 aaPredicted RBP8.99□□□□□ -0.97
SMG6-220ENST00000576218 PRR4Q16378 134 aa8.99□□□□□ -0.97
SMG6-220ENST00000576218 SPRR4Q96PI1 79 aa8.99□□□□□ -0.97
SMG6-220ENST00000576218 LITAFQ99732 161 aa8.99□□□□□ -0.97
SMG6-220ENST00000576218 B5MCH6 92 aa8.98□□□□□ -0.97
SMG6-220ENST00000576218 KRTAP13-2Q52LG2 175 aa8.98□□□□□ -0.97
SMG6-220ENST00000576218 LINC00304Q8N9R0 145 aa8.98□□□□□ -0.97
SMG6-220ENST00000576218 PPDPFQ9H3Y8 114 aa8.98□□□□□ -0.97
SMG6-220ENST00000576218 ZNF73O43830 326 aaPredicted RBP8.97□□□□□ -0.97
SMG6-220ENST00000576218 KRTAP4-16G5E9R7 235 aaPredicted RBP8.96□□□□□ -0.98
SMG6-220ENST00000576218 Q6ZRX8 168 aa8.96□□□□□ -0.98
SMG6-220ENST00000576218 LINC00518Q8N0U6 118 aa8.96□□□□□ -0.98
SMG6-220ENST00000576218 GAGE2AQ6NT46 116 aa8.95□□□□□ -0.98
SMG6-220ENST00000576218 PCP2Q8IVA1 136 aa8.95□□□□□ -0.98
SMG6-220ENST00000576218 SPANXDQ9BXN6 97 aa8.95□□□□□ -0.98
SMG6-220ENST00000576218 SCGB1D1O95968 90 aa8.94□□□□□ -0.98
SMG6-220ENST00000576218 C3orf22Q8N5N4 141 aa8.94□□□□□ -0.98
SMG6-220ENST00000576218 UBR4Q5T4S7 5183 aa8.93□□□□□ -0.98
SMG6-220ENST00000576218 IFITM1P13164 125 aa8.93□□□□□ -0.98
SMG6-220ENST00000576218 C4orf48Q5BLP8 95 aa8.93□□□□□ -0.98
SMG6-220ENST00000576218 Q6ZVH6 145 aa8.92□□□□□ -0.98
SMG6-220ENST00000576218 Q9BRP9 147 aa8.91□□□□□ -0.98
SMG6-220ENST00000576218 IGLV9-49A0A0B4J1Y8 123 aa8.9□□□□□ -0.98
SMG6-220ENST00000576218 A6NDN8 102 aa8.9□□□□□ -0.98
SMG6-220ENST00000576218 ERC2-IT1O76042 136 aa8.9□□□□□ -0.98
SMG6-220ENST00000576218 MUSTN1Q8IVN3 82 aa8.89□□□□□ -0.99
SMG6-220ENST00000576218 COX7BP24311 80 aa8.88□□□□□ -0.99
SMG6-220ENST00000576218 C6orf99Q4VX62 202 aa8.87□□□□□ -0.99
SMG6-220ENST00000576218 LINC00483Q53H64 154 aa8.87□□□□□ -0.99
SMG6-220ENST00000576218 SPAG11AQ6PDA7 123 aa8.87□□□□□ -0.99
SMG6-220ENST00000576218 Q8NBF4 154 aa8.87□□□□□ -0.99
SMG6-220ENST00000576218 DHRS4-AS1Q9P1J3 65 aa8.87□□□□□ -0.99
SMG6-220ENST00000576218 C5orf52A6NGY3 159 aa8.86□□□□□ -0.99
SMG6-220ENST00000576218 MOBPQ13875 183 aa8.86□□□□□ -0.99
SMG6-220ENST00000576218 C9orf153Q5TBE3 101 aa8.86□□□□□ -0.99
SMG6-220ENST00000576218 RETNLBQ9BQ08 111 aa8.86□□□□□ -0.99
SMG6-220ENST00000576218 TRAV13-2A0A0B4J235 113 aa8.84□□□□□ -0.99
SMG6-220ENST00000576218 LRP2P98164 4655 aa8.83□□□□□ -1
SMG6-220ENST00000576218 ELOF1P60002 83 aaKnown RBP8.83□□□□□ -1
SMG6-220ENST00000576218 ST20-AS1Q8NBB2 130 aa8.83□□□□□ -1
SMG6-220ENST00000576218 CTAG1AP78358 180 aa8.82□□□□□ -1
SMG6-220ENST00000576218 SLC25A34Q6PIV7 304 aa8.82□□□□□ -1
SMG6-220ENST00000576218 SSBP3-AS1Q7Z2R9 100 aa8.8□□□□□ -1
SMG6-220ENST00000576218 HIST1H4GQ99525 98 aa8.8□□□□□ -1
SMG6-220ENST00000576218 TRBV7-6A0A0J9YX20 115 aa8.79□□□□□ -1
SMG6-220ENST00000576218 A0A1B0GWB2 263 aa8.79□□□□□ -1
SMG6-220ENST00000576218 TAL2Q16559 108 aa8.79□□□□□ -1
SMG6-220ENST00000576218 DEFB105AQ8NG35 78 aa8.79□□□□□ -1
SMG6-220ENST00000576218 SPINK1P00995 79 aa8.78□□□□□ -1
SMG6-220ENST00000576218 COX8AP10176 69 aa8.78□□□□□ -1
SMG6-220ENST00000576218 VAMP8Q9BV40 100 aa8.78□□□□□ -1
SMG6-220ENST00000576218 LAMTOR3Q9UHA4 124 aa8.78□□□□□ -1
SMG6-220ENST00000576218 IGLV7-46A0A075B6I9 117 aa8.77□□□□□ -1.01
SMG6-220ENST00000576218 A4D1N5 150 aa8.77□□□□□ -1.01
SMG6-220ENST00000576218 NHP2Q9NX24 153 aaKnown RBP8.77□□□□□ -1.01
SMG6-220ENST00000576218 PAM16Q9Y3D7 125 aa8.77□□□□□ -1.01
SMG6-220ENST00000576218 SLC25A20O43772 301 aa8.76□□□□□ -1.01
SMG6-220ENST00000576218 VAMP3Q15836 100 aa8.76□□□□□ -1.01
SMG6-220ENST00000576218 SPATA45Q537H7 98 aa8.76□□□□□ -1.01
SMG6-220ENST00000576218 SMIM11BQ8TCY0 68 aa8.76□□□□□ -1.01
SMG6-220ENST00000576218 C12orf57Q99622 126 aa8.75□□□□□ -1.01
SMG6-220ENST00000576218 C14orf144Q96I85 54 aa8.74□□□□□ -1.01
SMG6-220ENST00000576218 Q1RN00 199 aa8.73□□□□□ -1.01
SMG6-220ENST00000576218 CDIP1Q9H305 208 aa8.73□□□□□ -1.01
SMG6-220ENST00000576218 TEX49A0A1B0GTD5 131 aa8.72□□□□□ -1.01
SMG6-220ENST00000576218 DLEU1O43261 78 aa8.72□□□□□ -1.01
SMG6-220ENST00000576218 SPRR1BP22528 89 aa8.72□□□□□ -1.01
SMG6-220ENST00000576218 TMA7Q9Y2S6 64 aaKnown RBP8.72□□□□□ -1.01
SMG6-220ENST00000576218 FP248Q71RG6 208 aaPredicted RBP8.71□□□□□ -1.02
SMG6-220ENST00000576218 LPAP08519 4548 aa8.69□□□□□ -1.02
SMG6-220ENST00000576218 RPS29P62273 56 aaKnown RBP8.69□□□□□ -1.02
SMG6-220ENST00000576218 HRCT1Q6UXD1 115 aa8.69□□□□□ -1.02
SMG6-220ENST00000576218 RAB37Q96AX2 223 aa8.69□□□□□ -1.02
SMG6-220ENST00000576218 H7C2G1 150 aa8.68□□□□□ -1.02
SMG6-220ENST00000576218 TPRXLQ17RH7 258 aa8.68□□□□□ -1.02
SMG6-220ENST00000576218 LIMD2Q9BT23 127 aa8.67□□□□□ -1.02
SMG6-220ENST00000576218 HIGD1BQ9P298 99 aa8.67□□□□□ -1.02
SMG6-220ENST00000576218 F8WEM9 126 aa8.66□□□□□ -1.02
SMG6-220ENST00000576218 BVES-AS1Q5T3Y7 98 aa8.66□□□□□ -1.02
SMG6-220ENST00000576218 PRO1933Q9H354 126 aa8.66□□□□□ -1.02
SMG6-220ENST00000576218 hADV29S1A0JD25 119 aa8.65□□□□□ -1.02
SMG6-220ENST00000576218 Q8N377 158 aa8.65□□□□□ -1.02
SMG6-220ENST00000576218 IGLV5-48A0A075B6I7 105 aa8.64□□□□□ -1.03
SMG6-220ENST00000576218 LINC00575Q6W349 94 aa8.64□□□□□ -1.03
SMG6-220ENST00000576218 TMEM238LA0A1B0GVL6 79 aa8.63□□□□□ -1.03
SMG6-220ENST00000576218 A6NJY4 79 aa8.63□□□□□ -1.03
SMG6-220ENST00000576218 SNCGO76070 127 aa8.62□□□□□ -1.03
SMG6-220ENST00000576218 Q6ZQY7 126 aa8.62□□□□□ -1.03
SMG6-220ENST00000576218 CFC1BP0CG36 223 aa8.61□□□□□ -1.03
SMG6-220ENST00000576218 CFC1P0CG37 223 aa8.61□□□□□ -1.03
SMG6-220ENST00000576218 LINC01547P58512 204 aaPredicted RBP8.61□□□□□ -1.03
SMG6-220ENST00000576218 C2orf91Q6ZV80 131 aa8.61□□□□□ -1.03
SMG6-220ENST00000576218 A0A0B4J2C4 111 aa8.6□□□□□ -1.03
SMG6-220ENST00000576218 PYY3Q5JQD4 70 aa8.6□□□□□ -1.03
SMG6-220ENST00000576218 CEND1Q8N111 149 aa8.6□□□□□ -1.03
SMG6-220ENST00000576218 SMIM29Q86T20 159 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 77.3 ms