RNA–Protein interactions for RNA: ENST00000576218.5

SMG6-220, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 902 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-220ENST00000576218 NISCHQ9Y2I1 1504 aa36.97■■■■□ 3.51
SMG6-220ENST00000576218 CCDC180Q9P1Z9 1646 aa32.94■■■□□ 2.86
SMG6-220ENST00000576218 ABCC9O60706 1549 aa32.42■■■□□ 2.78
SMG6-220ENST00000576218 DCAF8L2P0C7V8 631 aa31.15■■■□□ 2.58
SMG6-220ENST00000576218 RB1CC1Q8TDY2 1594 aa31.11■■■□□ 2.57
SMG6-220ENST00000576218 NACADO15069 1562 aa31■■■□□ 2.55
SMG6-220ENST00000576218 ZCCHC6Q5VYS8 1495 aaKnown RBP30.77■■■□□ 2.52
SMG6-220ENST00000576218 MYO15BQ96JP2 1530 aa30.71■■■□□ 2.51
SMG6-220ENST00000576218 DCAF1Q9Y4B6 1507 aa30.54■■■□□ 2.48
SMG6-220ENST00000576218 UNC13AQ9UPW8 1703 aa30.31■■■□□ 2.44
SMG6-220ENST00000576218 PABPN1Q86U42 306 aaKnown RBP eCLIP30.28■■■□□ 2.44
SMG6-220ENST00000576218 SCRIBQ14160 1630 aa30.13■■■□□ 2.41
SMG6-220ENST00000576218 BICRAQ9NZM4 1560 aa30.06■■■□□ 2.4
SMG6-220ENST00000576218 SHROOM4Q9ULL8 1493 aa29.8■■■□□ 2.36
SMG6-220ENST00000576218 DNAJC5BQ9UF47 199 aa29.74■■■□□ 2.35
SMG6-220ENST00000576218 EIF4G1Q04637 1599 aaKnown RBP29.35■■■□□ 2.29
SMG6-220ENST00000576218 CC2D2AQ9P2K1 1620 aa29.27■■■□□ 2.28
SMG6-220ENST00000576218 CECR2Q9BXF3 1484 aa29.13■■■□□ 2.25
SMG6-220ENST00000576218 SMARCA4P51532 1647 aa28.74■■■□□ 2.19
SMG6-220ENST00000576218 BAZ1AQ9NRL2 1556 aaPredicted RBP28.71■■■□□ 2.19
SMG6-220ENST00000576218 SMARCA2P51531 1590 aa28.61■■■□□ 2.17
SMG6-220ENST00000576218 ATAD2BQ9ULI0 1458 aa28.59■■■□□ 2.17
SMG6-220ENST00000576218 NCAPD3P42695 1498 aa28.57■■■□□ 2.16
SMG6-220ENST00000576218 MROH2BQ7Z745 1585 aa28.5■■■□□ 2.15
SMG6-220ENST00000576218 HMGXB3Q12766 1538 aa28.46■■■□□ 2.15
SMG6-220ENST00000576218 BAZ1BQ9UIG0 1483 aaKnown RBP28.44■■■□□ 2.14
SMG6-220ENST00000576218 PEG3Q9GZU2 1588 aa28.39■■■□□ 2.14
SMG6-220ENST00000576218 WIZO95785 1651 aa28.2■■■□□ 2.11
SMG6-220ENST00000576218 RSF1Q96T23 1441 aaPredicted RBP28.12■■■□□ 2.09
SMG6-220ENST00000576218 ERCC6Q03468 1493 aa28.04■■■□□ 2.08
SMG6-220ENST00000576218 NESP48681 1621 aa27.97■■■□□ 2.07
SMG6-220ENST00000576218 TOP2AP11388 1531 aaKnown RBP27.91■■■□□ 2.06
SMG6-220ENST00000576218 LAMC3Q9Y6N6 1575 aa27.89■■■□□ 2.05
SMG6-220ENST00000576218 CADPSQ9ULU8 1353 aa27.78■■■□□ 2.04
SMG6-220ENST00000576218 PDS5BQ9NTI5 1447 aa27.75■■■□□ 2.03
SMG6-220ENST00000576218 CUX2O14529 1486 aa27.68■■■□□ 2.02
SMG6-220ENST00000576218 KIF21AQ7Z4S6 1674 aa27.65■■■□□ 2.02
SMG6-220ENST00000576218 CCDC88BA6NC98 1476 aa27.57■■■□□ 2
SMG6-220ENST00000576218 CFTRP13569 1480 aa27.56■■■□□ 2
SMG6-220ENST00000576218 THOC2Q8NI27 1593 aaKnown RBP27.56■■■□□ 2
SMG6-220ENST00000576218 CEP164Q9UPV0 1460 aa27.51■■□□□ 1.99
SMG6-220ENST00000576218 FANCD2Q9BXW9 1451 aa27.5■■□□□ 1.99
SMG6-220ENST00000576218 SUPT5HO00267 1087 aaKnown RBP27.49■■□□□ 1.99
SMG6-220ENST00000576218 MRC2Q9UBG0 1479 aa27.46■■□□□ 1.99
SMG6-220ENST00000576218 PRDM2Q13029 1718 aa27.36■■□□□ 1.97
SMG6-220ENST00000576218 WDR62O43379 1518 aa27.33■■□□□ 1.97
SMG6-220ENST00000576218 URB2Q14146 1524 aaKnown RBP27.18■■□□□ 1.94
SMG6-220ENST00000576218 ABCC8Q09428 1581 aa27.03■■□□□ 1.92
SMG6-220ENST00000576218 TOPBP1Q92547 1522 aa27.02■■□□□ 1.92
SMG6-220ENST00000576218 DNMBPQ6XZF7 1577 aa26.99■■□□□ 1.91
SMG6-220ENST00000576218 DNAJC5Q9H3Z4 198 aa26.93■■□□□ 1.9
SMG6-220ENST00000576218 IFT140Q96RY7 1462 aa26.91■■□□□ 1.9
SMG6-220ENST00000576218 POLA1P09884 1462 aaPredicted RBP26.78■■□□□ 1.88
SMG6-220ENST00000576218 ZNF608Q9ULD9 1512 aaPredicted RBP26.76■■□□□ 1.87
SMG6-220ENST00000576218 CUX1P39880 1505 aa26.75■■□□□ 1.87
SMG6-220ENST00000576218 FGD5Q6ZNL6 1462 aa26.72■■□□□ 1.87
SMG6-220ENST00000576218 SOGA1O94964 1423 aa26.7■■□□□ 1.86
SMG6-220ENST00000576218 TARBP1Q13395 1621 aaKnown RBP26.68■■□□□ 1.86
SMG6-220ENST00000576218 EIF4G3O43432 1585 aaKnown RBP26.68■■□□□ 1.86
SMG6-220ENST00000576218 RAD54L2Q9Y4B4 1467 aa26.68■■□□□ 1.86
SMG6-220ENST00000576218 AQRO60306 1485 aaKnown RBP eCLIP26.62■■□□□ 1.85
SMG6-220ENST00000576218 WRNQ14191 1432 aaPredicted RBP eCLIP26.59■■□□□ 1.851e-6■■■■■ 58.5
SMG6-220ENST00000576218 TDRD9Q8NDG6 1382 aaKnown RBP26.57■■□□□ 1.84
SMG6-220ENST00000576218 OSCARQ8IYS5 282 aa26.55■■□□□ 1.84
SMG6-220ENST00000576218 WDR97A6NE52 1622 aa26.5■■□□□ 1.83
SMG6-220ENST00000576218 TOP2BQ02880 1626 aa26.5■■□□□ 1.83
SMG6-220ENST00000576218 SYNJ1O43426 1573 aa26.49■■□□□ 1.83
SMG6-220ENST00000576218 BIVM-ERCC5R4GMW8 1640 aa26.48■■□□□ 1.83
SMG6-220ENST00000576218 FBLN2P98095 1184 aa26.46■■□□□ 1.83
SMG6-220ENST00000576218 ABCA10Q8WWZ4 1543 aa26.42■■□□□ 1.82
SMG6-220ENST00000576218 GRIN2BQ13224 1484 aa26.4■■□□□ 1.82
SMG6-220ENST00000576218 SNAPC4Q5SXM2 1469 aa26.4■■□□□ 1.82
SMG6-220ENST00000576218 GAPVD1Q14C86 1478 aa26.39■■□□□ 1.82
SMG6-220ENST00000576218 CHD1O14646 1710 aa26.36■■□□□ 1.81
SMG6-220ENST00000576218 MAGI1Q96QZ7 1491 aaPredicted RBP26.34■■□□□ 1.81
SMG6-220ENST00000576218 PBRM1Q86U86 1689 aa26.34■■□□□ 1.81
SMG6-220ENST00000576218 CHMP7Q8WUX9 453 aaPredicted RBP26.32■■□□□ 1.8
SMG6-220ENST00000576218 ABCA5Q8WWZ7 1642 aa26.32■■□□□ 1.8
SMG6-220ENST00000576218 SYNJ2O15056 1496 aa26.24■■□□□ 1.79
SMG6-220ENST00000576218 TRIM41Q8WV44 630 aa26.17■■□□□ 1.78
SMG6-220ENST00000576218 ERICH3Q5RHP9 1530 aa26.12■■□□□ 1.77
SMG6-220ENST00000576218 ADAMTS12P58397 1594 aa26.12■■□□□ 1.77
SMG6-220ENST00000576218 RIMBP3CA6NJZ7 1639 aa26.1■■□□□ 1.77
SMG6-220ENST00000576218 RIMBP3BA6NNM3 1639 aa26.1■■□□□ 1.77
SMG6-220ENST00000576218 RIMBP3Q9UFD9 1639 aa26.1■■□□□ 1.77
SMG6-220ENST00000576218 ARHGEF11O15085 1522 aa26.09■■□□□ 1.77
SMG6-220ENST00000576218 FHAD1B1AJZ9 1412 aa26.07■■□□□ 1.76
SMG6-220ENST00000576218 KIF27Q86VH2 1401 aa26.06■■□□□ 1.76
SMG6-220ENST00000576218 GRIN2AQ12879 1464 aa26.05■■□□□ 1.76
SMG6-220ENST00000576218 CLASP1Q7Z460 1538 aa26.03■■□□□ 1.76
SMG6-220ENST00000576218 CYB5RLQ6IPT4 315 aa25.9■■□□□ 1.74
SMG6-220ENST00000576218 CEP170Q5SW79 1584 aa25.9■■□□□ 1.74
SMG6-220ENST00000576218 NUP160Q12769 1436 aa25.89■■□□□ 1.74
SMG6-220ENST00000576218 CUL7Q14999 1698 aa25.89■■□□□ 1.73
SMG6-220ENST00000576218 IGF1RP08069 1367 aa25.88■■□□□ 1.73
SMG6-220ENST00000576218 ARAP1Q96P48 1450 aa25.85■■□□□ 1.73
SMG6-220ENST00000576218 CARMIL1Q5VZK9 1371 aa25.8■■□□□ 1.72
SMG6-220ENST00000576218 RUSC2Q8N2Y8 1516 aa25.72■■□□□ 1.71
SMG6-220ENST00000576218 SHROOM2Q13796 1616 aa25.7■■□□□ 1.7
SMG6-220ENST00000576218 JPH4Q96JJ6 628 aa25.68■■□□□ 1.7
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms