RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 RETNQ9HD89 108 aa6.52□□□□□ -1.37
CCDC40-212ENST00000574799 DEFB4AO15263 64 aa6.52□□□□□ -1.37
CCDC40-212ENST00000574799 CMC4P56277 68 aaPredicted RBP6.52□□□□□ -1.37
CCDC40-212ENST00000574799 SPTSSBQ8NFR3 76 aa6.52□□□□□ -1.37
CCDC40-212ENST00000574799 PLAC8L1A1L4L8 177 aa6.51□□□□□ -1.37
CCDC40-212ENST00000574799 EPM2AB3EWF7 344 aa6.51□□□□□ -1.37
CCDC40-212ENST00000574799 PRO0255Q9UI72 69 aa6.51□□□□□ -1.37
CCDC40-212ENST00000574799 KLK12Q9UKR0 248 aa6.51□□□□□ -1.37
CCDC40-212ENST00000574799 C10orf25Q5T742 122 aa6.51□□□□□ -1.37
CCDC40-212ENST00000574799 F8P00451 2351 aa6.5□□□□□ -1.37
CCDC40-212ENST00000574799 MRPL55Q7Z7F7 128 aaKnown RBP6.49□□□□□ -1.37
CCDC40-212ENST00000574799 SMIM29Q86T20 159 aa6.49□□□□□ -1.37
CCDC40-212ENST00000574799 CSNK1G2-AS1Q8NCQ2 148 aa6.49□□□□□ -1.37
CCDC40-212ENST00000574799 CAMK2N2Q96S95 79 aa6.49□□□□□ -1.37
CCDC40-212ENST00000574799 A0A1B0GUV1 79 aa6.48□□□□□ -1.37
CCDC40-212ENST00000574799 C9orf66Q5T8R8 295 aa6.47□□□□□ -1.37
CCDC40-212ENST00000574799 Q8NDZ9 215 aa6.47□□□□□ -1.37
CCDC40-212ENST00000574799 IGLV1-51P01701 117 aa6.47□□□□□ -1.37
CCDC40-212ENST00000574799 KIAA0087Q14695 138 aa6.47□□□□□ -1.37
CCDC40-212ENST00000574799 DNAH7Q8WXX0 4024 aa6.47□□□□□ -1.37
CCDC40-212ENST00000574799 MGAM2Q2M2H8 2515 aa6.47□□□□□ -1.37
CCDC40-212ENST00000574799 ERC2-IT1O76042 136 aa6.46□□□□□ -1.37
CCDC40-212ENST00000574799 NKAPP1Q8N9T2 125 aa6.46□□□□□ -1.38
CCDC40-212ENST00000574799 IGKV4-1P06312 121 aa6.45□□□□□ -1.38
CCDC40-212ENST00000574799 CHKB-CPT1BH3BT56 60 aa6.45□□□□□ -1.38
CCDC40-212ENST00000574799 C1orf64Q8NEQ6 169 aa6.45□□□□□ -1.38
CCDC40-212ENST00000574799 IGLV6-57P01721 117 aa6.44□□□□□ -1.38
CCDC40-212ENST00000574799 MP68P56378 58 aa6.44□□□□□ -1.38
CCDC40-212ENST00000574799 HUWE1Q7Z6Z7 4374 aaKnown RBP6.44□□□□□ -1.38
CCDC40-212ENST00000574799 OCR1Q9BZK8 76 aa6.43□□□□□ -1.38
CCDC40-212ENST00000574799 A8MUN3 132 aa6.42□□□□□ -1.38
CCDC40-212ENST00000574799 INAFM1C9JVW0 142 aa6.42□□□□□ -1.38
CCDC40-212ENST00000574799 COL7A1Q02388 2944 aa6.42□□□□□ -1.38
CCDC40-212ENST00000574799 ETDCA0A1B0GVM5 59 aa6.41□□□□□ -1.38
CCDC40-212ENST00000574799 hDV103S1A0JD37 113 aa6.41□□□□□ -1.38
CCDC40-212ENST00000574799 M0R378 163 aa6.41□□□□□ -1.38
CCDC40-212ENST00000574799 WFDC13Q8IUB5 93 aa6.41□□□□□ -1.38
CCDC40-212ENST00000574799 ELOF1P60002 83 aaKnown RBP6.41□□□□□ -1.38
CCDC40-212ENST00000574799 Q6ZTC4 211 aa6.41□□□□□ -1.38
CCDC40-212ENST00000574799 TRAV22A0A0B4J277 110 aa6.41□□□□□ -1.38
CCDC40-212ENST00000574799 PRR15Q8IV56 129 aa6.41□□□□□ -1.38
CCDC40-212ENST00000574799 DEFB135Q30KP9 77 aa6.4□□□□□ -1.38
CCDC40-212ENST00000574799 DEFB116Q30KQ4 102 aa6.4□□□□□ -1.39
CCDC40-212ENST00000574799 WFDC10BQ8IUB3 73 aa6.39□□□□□ -1.39
CCDC40-212ENST00000574799 C6orf48Q9UBA6 75 aa6.39□□□□□ -1.39
CCDC40-212ENST00000574799 DNAH9Q9NYC9 4486 aa6.39□□□□□ -1.39
CCDC40-212ENST00000574799 A6NED7 52 aa6.39□□□□□ -1.39
CCDC40-212ENST00000574799 KPRPQ5T749 579 aaPredicted RBP6.39□□□□□ -1.39
CCDC40-212ENST00000574799 Q6ZRP5 223 aa6.39□□□□□ -1.39
CCDC40-212ENST00000574799 PRR15LQ9BU68 103 aa6.39□□□□□ -1.39
CCDC40-212ENST00000574799 UBE2BP63146 152 aa6.38□□□□□ -1.39
CCDC40-212ENST00000574799 LINC00208Q96KT6 92 aa6.38□□□□□ -1.39
CCDC40-212ENST00000574799 BAHCC1Q9P281 2608 aa6.38□□□□□ -1.39
CCDC40-212ENST00000574799 C1orf137Q5JT78 98 aa6.38□□□□□ -1.39
CCDC40-212ENST00000574799 TENM3Q9P273 2699 aa6.38□□□□□ -1.39
CCDC40-212ENST00000574799 A0A0J9YWU9 116 aa6.37□□□□□ -1.39
CCDC40-212ENST00000574799 NDUFB1O75438 58 aa6.37□□□□□ -1.39
CCDC40-212ENST00000574799 IGHV4-30-4P0DP06 118 aa6.37□□□□□ -1.39
CCDC40-212ENST00000574799 DYNC2H1Q8NCM8 4307 aaKnown RBP6.37□□□□□ -1.39
CCDC40-212ENST00000574799 DNAH10Q8IVF4 4471 aa6.36□□□□□ -1.39
CCDC40-212ENST00000574799 UBE2AP49459 152 aa6.36□□□□□ -1.39
CCDC40-212ENST00000574799 IGKV2D-24A0A075B6R9 120 aa6.35□□□□□ -1.39
CCDC40-212ENST00000574799 RPL37AP8A6NKH3 93 aa6.35□□□□□ -1.39
CCDC40-212ENST00000574799 CD164Q04900 197 aa6.35□□□□□ -1.39
CCDC40-212ENST00000574799 NBEAL1Q6ZS30 2694 aa6.35□□□□□ -1.39
CCDC40-212ENST00000574799 STAB1Q9NY15 2570 aa6.35□□□□□ -1.39
CCDC40-212ENST00000574799 X6R8D5 127 aa6.35□□□□□ -1.39
CCDC40-212ENST00000574799 LYRM9A8MSI8 78 aa6.35□□□□□ -1.39
CCDC40-212ENST00000574799 Q1T7F1 81 aa6.35□□□□□ -1.39
CCDC40-212ENST00000574799 LINC00612Q8N6U2 182 aa6.34□□□□□ -1.39
CCDC40-212ENST00000574799 B9D2Q9BPU9 175 aa6.34□□□□□ -1.39
CCDC40-212ENST00000574799 IGLV2-33A0A075B6J2 118 aaPredicted RBP6.34□□□□□ -1.4
CCDC40-212ENST00000574799 LINC00528Q8N1L1 170 aa6.34□□□□□ -1.4
CCDC40-212ENST00000574799 K7EQZ3 153 aa6.33□□□□□ -1.4
CCDC40-212ENST00000574799 LELP1Q5T871 98 aa6.33□□□□□ -1.4
CCDC40-212ENST00000574799 Q6ZRU5 148 aa6.33□□□□□ -1.4
CCDC40-212ENST00000574799 VPREB1P12018 145 aa6.33□□□□□ -1.4
CCDC40-212ENST00000574799 ST20-AS1Q8NBB2 130 aa6.33□□□□□ -1.4
CCDC40-212ENST00000574799 HCG22E2RYF7 251 aa6.33□□□□□ -1.4
CCDC40-212ENST00000574799 EGFEM1PQ0D2K5 195 aa6.32□□□□□ -1.4
CCDC40-212ENST00000574799 PSCAO43653 123 aa6.31□□□□□ -1.4
CCDC40-212ENST00000574799 SPART-AS1P0CW21 52 aa6.31□□□□□ -1.4
CCDC40-212ENST00000574799 SYCNQ0VAF6 134 aa6.31□□□□□ -1.4
CCDC40-212ENST00000574799 Q8N377 158 aa6.3□□□□□ -1.4
CCDC40-212ENST00000574799 DHRS4-AS1Q9P1J3 65 aa6.29□□□□□ -1.4
CCDC40-212ENST00000574799 COL6A5A8TX70 2615 aa6.29□□□□□ -1.4
CCDC40-212ENST00000574799 Q8NBF4 154 aa6.29□□□□□ -1.4
CCDC40-212ENST00000574799 LIMD2Q9BT23 127 aa6.29□□□□□ -1.4
CCDC40-212ENST00000574799 APOC4P55056 127 aa6.28□□□□□ -1.4
CCDC40-212ENST00000574799 GVQW2A0A096LPI5 108 aaPredicted RBP6.28□□□□□ -1.4
CCDC40-212ENST00000574799 A0A1W2PNM2 257 aa6.28□□□□□ -1.4
CCDC40-212ENST00000574799 A8MU10 97 aa6.28□□□□□ -1.4
CCDC40-212ENST00000574799 H0Y9P7 68 aa6.28□□□□□ -1.4
CCDC40-212ENST00000574799 C7orf33Q8WU49 177 aa6.27□□□□□ -1.41
CCDC40-212ENST00000574799 PRKDCP78527 4128 aaKnown RBP6.27□□□□□ -1.41
CCDC40-212ENST00000574799 KTN1-AS1Q86SY8 53 aa6.27□□□□□ -1.41
CCDC40-212ENST00000574799 A0A087WSZ3 146 aa6.26□□□□□ -1.41
CCDC40-212ENST00000574799 KRTAP10-11P60412 298 aa6.26□□□□□ -1.41
CCDC40-212ENST00000574799 A0A0G2JQZ4 141 aa6.26□□□□□ -1.41
CCDC40-212ENST00000574799 A0A1W2PNN7 141 aa6.26□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms