RNA–Protein interactions for RNA: ENST00000568642.5

VPS35-209, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 447 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-209ENST00000568642 A0A1W2PPM0 123 aa1.57□□□□□ -2.16
VPS35-209ENST00000568642 H3BRM9 83 aa1.57□□□□□ -2.16
VPS35-209ENST00000568642 SYS1-DBNDD2H3BUS1 97 aa1.57□□□□□ -2.16
VPS35-209ENST00000568642 ATOX1O00244 68 aa1.57□□□□□ -2.16
VPS35-209ENST00000568642 RNASE3P12724 160 aaKnown RBP1.57□□□□□ -2.16
VPS35-209ENST00000568642 SEC11AP67812 179 aa1.57□□□□□ -2.16
VPS35-209ENST00000568642 PPDPFLQ8WWR9 84 aa1.57□□□□□ -2.16
VPS35-209ENST00000568642 IFI27L1Q96BM0 104 aa1.57□□□□□ -2.16
VPS35-209ENST00000568642 TIMM21Q9BVV7 248 aa1.57□□□□□ -2.16
VPS35-209ENST00000568642 TRBV7-1A0A0A6YYK4 115 aa1.56□□□□□ -2.16
VPS35-209ENST00000568642 TRAV13-2A0A0B4J235 113 aa1.56□□□□□ -2.16
VPS35-209ENST00000568642 TRAV22A0A0B4J277 110 aa1.56□□□□□ -2.16
VPS35-209ENST00000568642 TRBV10-3A0A0K0K1G6 114 aa1.56□□□□□ -2.16
VPS35-209ENST00000568642 SIX6O95475 246 aa1.56□□□□□ -2.16
VPS35-209ENST00000568642 CFDP00746 253 aaPredicted RBP1.56□□□□□ -2.16
VPS35-209ENST00000568642 IGKV3-15P01624 115 aa1.56□□□□□ -2.16
VPS35-209ENST00000568642 CTSGP08311 255 aa1.56□□□□□ -2.16
VPS35-209ENST00000568642 RNASE2P10153 161 aaKnown RBP1.56□□□□□ -2.16
VPS35-209ENST00000568642 UBE2D1P51668 147 aa1.56□□□□□ -2.16
VPS35-209ENST00000568642 ERHP84090 104 aaKnown RBP1.56□□□□□ -2.16
VPS35-209ENST00000568642 LY6EQ16553 131 aa1.56□□□□□ -2.16
VPS35-209ENST00000568642 NMSQ5H8A3 153 aa1.56□□□□□ -2.16
VPS35-209ENST00000568642 LCE3CQ5T5A8 94 aa1.56□□□□□ -2.16
VPS35-209ENST00000568642 Q6ZTI0 123 aa1.56□□□□□ -2.16
VPS35-209ENST00000568642 VMO1Q7Z5L0 202 aa1.56□□□□□ -2.16
VPS35-209ENST00000568642 FAM223AQ8IWN6 122 aa1.56□□□□□ -2.16
VPS35-209ENST00000568642 CLECL1Q8IZS7 167 aa1.56□□□□□ -2.16
VPS35-209ENST00000568642 SPTSSBQ8NFR3 76 aa1.56□□□□□ -2.16
VPS35-209ENST00000568642 TMEM254Q8TBM7 123 aa1.56□□□□□ -2.16
VPS35-209ENST00000568642 S100A13Q99584 98 aa1.56□□□□□ -2.16
VPS35-209ENST00000568642 HIGD2AQ9BW72 106 aa1.56□□□□□ -2.16
VPS35-209ENST00000568642 ST20Q9HBF5 79 aa1.56□□□□□ -2.16
VPS35-209ENST00000568642 APLNQ9ULZ1 77 aa1.56□□□□□ -2.16
VPS35-209ENST00000568642 SPCS1Q9Y6A9 102 aa1.56□□□□□ -2.16
VPS35-209ENST00000568642 H3BSH0 61 aa1.55□□□□□ -2.16
VPS35-209ENST00000568642 FAUP35544 74 aaKnown RBP1.55□□□□□ -2.16
VPS35-209ENST00000568642 KRTAP5-5Q701N2 237 aaPredicted RBP1.55□□□□□ -2.16
VPS35-209ENST00000568642 Q8N9L7 120 aa1.55□□□□□ -2.16
VPS35-209ENST00000568642 FAM167A-AS1Q96KT0 104 aa1.55□□□□□ -2.16
VPS35-209ENST00000568642 TRGV9Q99603 122 aa1.55□□□□□ -2.16
VPS35-209ENST00000568642 CYP4F30PQ9H0H9 118 aa1.55□□□□□ -2.16
VPS35-209ENST00000568642 SMCO4Q9NRQ5 59 aa1.55□□□□□ -2.16
VPS35-209ENST00000568642 TRAV12-3A0A0B4J271 114 aa1.54□□□□□ -2.16
VPS35-209ENST00000568642 A0A1W2PNN7 141 aa1.54□□□□□ -2.16
VPS35-209ENST00000568642 H3BUX3 64 aa1.54□□□□□ -2.16
VPS35-209ENST00000568642 PSCAO43653 123 aa1.54□□□□□ -2.16
VPS35-209ENST00000568642 IGLV3-1P01715 115 aa1.54□□□□□ -2.16
VPS35-209ENST00000568642 GNG11P61952 73 aa1.54□□□□□ -2.16
VPS35-209ENST00000568642 KLKP1Q107X0 134 aa1.54□□□□□ -2.16
VPS35-209ENST00000568642 OR10AG1Q8NH19 301 aa1.54□□□□□ -2.16
VPS35-209ENST00000568642 CDC42SE2Q9NRR3 84 aa1.54□□□□□ -2.16
VPS35-209ENST00000568642 ANAPC11Q9NYG5 84 aa1.54□□□□□ -2.16
VPS35-209ENST00000568642 A0A0J9YY99 117 aa1.53□□□□□ -2.16
VPS35-209ENST00000568642 SPRR5A0A1B0GTR4 108 aa1.53□□□□□ -2.16
VPS35-209ENST00000568642 DEFA5Q01523 94 aa1.53□□□□□ -2.16
VPS35-209ENST00000568642 MPV17LQ2QL34 196 aa1.53□□□□□ -2.16
VPS35-209ENST00000568642 HEPN1Q6WQI6 88 aa1.53□□□□□ -2.16
VPS35-209ENST00000568642 LINC00299Q6ZSB3 139 aa1.53□□□□□ -2.16
VPS35-209ENST00000568642 DNAH8Q96JB1 4490 aa1.52□□□□□ -2.17
VPS35-209ENST00000568642 TRBV7-3A0A075B6L6 115 aa1.52□□□□□ -2.17
VPS35-209ENST00000568642 KRTAP10-1P60331 282 aa1.52□□□□□ -2.17
VPS35-209ENST00000568642 CFAP126Q5VTH2 177 aa1.52□□□□□ -2.17
VPS35-209ENST00000568642 UBE2DNLQ8IWF7 75 aa1.52□□□□□ -2.17
VPS35-209ENST00000568642 Q8N6K4 173 aa1.52□□□□□ -2.17
VPS35-209ENST00000568642 NDUFB11Q9NX14 153 aa1.52□□□□□ -2.17
VPS35-209ENST00000568642 RABAC1Q9UI14 185 aa1.52□□□□□ -2.17
VPS35-209ENST00000568642 A0A087WTM6 91 aa1.51□□□□□ -2.17
VPS35-209ENST00000568642 IGKV3D-7A0A0C4DH55 119 aa1.51□□□□□ -2.17
VPS35-209ENST00000568642 IGKV3OR2-268A0A0C4DH90 116 aa1.51□□□□□ -2.17
VPS35-209ENST00000568642 A0A0G2JND7 137 aa1.51□□□□□ -2.17
VPS35-209ENST00000568642 TRBV10-1A0A0K0K1A3 114 aa1.51□□□□□ -2.17
VPS35-209ENST00000568642 NBDYA0A0U1RRE5 68 aa1.51□□□□□ -2.17
VPS35-209ENST00000568642 LOC101927531A0A1B0GV80 90 aa1.51□□□□□ -2.17
VPS35-209ENST00000568642 TMEM30CPA0ZSE6 113 aa1.51□□□□□ -2.17
VPS35-209ENST00000568642 NAP1L6A6NFF2 107 aa1.51□□□□□ -2.17
VPS35-209ENST00000568642 SDHAF1A6NFY7 115 aa1.51□□□□□ -2.17
VPS35-209ENST00000568642 CRYM-AS1A6NIL9 109 aa1.51□□□□□ -2.17
VPS35-209ENST00000568642 DEFB136Q30KP8 78 aa1.51□□□□□ -2.17
VPS35-209ENST00000568642 DEFB134Q4QY38 66 aa1.51□□□□□ -2.17
VPS35-209ENST00000568642 C10orf99Q6UWK7 81 aa1.51□□□□□ -2.17
VPS35-209ENST00000568642 ZNF818PQ6ZRF7 136 aa1.51□□□□□ -2.17
VPS35-209ENST00000568642 CYP2G1PQ6ZSU1 146 aa1.51□□□□□ -2.17
VPS35-209ENST00000568642 C18orf32Q8TCD1 76 aa1.51□□□□□ -2.17
VPS35-209ENST00000568642 KRTAP2-1Q9BYU5 128 aa1.51□□□□□ -2.17
VPS35-209ENST00000568642 NXT2Q9NPJ8 142 aaKnown RBP1.51□□□□□ -2.17
VPS35-209ENST00000568642 NDUFA4L2Q9NRX3 87 aa1.51□□□□□ -2.17
VPS35-209ENST00000568642 H3BUT2 72 aa1.5□□□□□ -2.17
VPS35-209ENST00000568642 IGKV1-17P01599 117 aa1.5□□□□□ -2.17
VPS35-209ENST00000568642 IGHV3-30P01768 117 aa1.5□□□□□ -2.17
VPS35-209ENST00000568642 IGHV3-30-5P0DP03 117 aa1.5□□□□□ -2.17
VPS35-209ENST00000568642 LINC00315P59091 139 aa1.5□□□□□ -2.17
VPS35-209ENST00000568642 PYDC2Q56P42 97 aa1.5□□□□□ -2.17
VPS35-209ENST00000568642 Q6ZRN7 208 aaPredicted RBP1.5□□□□□ -2.17
VPS35-209ENST00000568642 CYYR1Q96J86 154 aa1.5□□□□□ -2.17
VPS35-209ENST00000568642 TRBV6-8A0A0A6YYG3 113 aa1.49□□□□□ -2.17
VPS35-209ENST00000568642 F2Z2F3 143 aa1.49□□□□□ -2.17
VPS35-209ENST00000568642 PDE6GP18545 87 aa1.49□□□□□ -2.17
VPS35-209ENST00000568642 KRTDAPP60985 99 aa1.49□□□□□ -2.17
VPS35-209ENST00000568642 SNRPFP62306 86 aaKnown RBP1.49□□□□□ -2.17
VPS35-209ENST00000568642 C2orf82Q6UX34 121 aa1.49□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms