RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 LYSTQ99698 3801 aa8.16□□□□□ -1.1
LDLR-205ENST00000557933 IGKV2D-24A0A075B6R9 120 aa8.16□□□□□ -1.1
LDLR-205ENST00000557933 Q6ZRP5 223 aa8.15□□□□□ -1.1
LDLR-205ENST00000557933 NREPQ16612 68 aa8.15□□□□□ -1.11
LDLR-205ENST00000557933 VPREB1P12018 145 aa8.14□□□□□ -1.11
LDLR-205ENST00000557933 KRTAP24-1Q3LI83 254 aa8.14□□□□□ -1.11
LDLR-205ENST00000557933 Q6ZTC4 211 aa8.14□□□□□ -1.11
LDLR-205ENST00000557933 TRBV7-4A0A0J9YYF1 115 aa8.13□□□□□ -1.11
LDLR-205ENST00000557933 FAM168BA1KXE4 195 aa8.13□□□□□ -1.11
LDLR-205ENST00000557933 ELOF1P60002 83 aaKnown RBP8.13□□□□□ -1.11
LDLR-205ENST00000557933 OXLD1Q5BKU9 147 aa8.13□□□□□ -1.11
LDLR-205ENST00000557933 C9orf66Q5T8R8 295 aa8.13□□□□□ -1.11
LDLR-205ENST00000557933 FAM229BQ4G0N7 80 aa8.13□□□□□ -1.11
LDLR-205ENST00000557933 FP248Q71RG6 208 aaPredicted RBP8.13□□□□□ -1.11
LDLR-205ENST00000557933 PRR34Q9NV39 138 aa8.13□□□□□ -1.11
LDLR-205ENST00000557933 MGAM2Q2M2H8 2515 aa8.13□□□□□ -1.11
LDLR-205ENST00000557933 KPRPQ5T749 579 aaPredicted RBP8.12□□□□□ -1.11
LDLR-205ENST00000557933 SERTAD4-AS1Q5TG53 156 aa8.12□□□□□ -1.11
LDLR-205ENST00000557933 APOC4P55056 127 aa8.12□□□□□ -1.11
LDLR-205ENST00000557933 MIFP14174 115 aa8.11□□□□□ -1.11
LDLR-205ENST00000557933 PRR4Q16378 134 aa8.11□□□□□ -1.11
LDLR-205ENST00000557933 HIGD2AQ9BW72 106 aa8.11□□□□□ -1.11
LDLR-205ENST00000557933 FAM30AQ9NZY2 134 aa8.11□□□□□ -1.11
LDLR-205ENST00000557933 C15orf56Q8N910 161 aa8.11□□□□□ -1.11
LDLR-205ENST00000557933 ST20-AS1Q8NBB2 130 aa8.11□□□□□ -1.11
LDLR-205ENST00000557933 TMEM254Q8TBM7 123 aa8.11□□□□□ -1.11
LDLR-205ENST00000557933 PKIGQ9Y2B9 76 aa8.11□□□□□ -1.11
LDLR-205ENST00000557933 DEFB116Q30KQ4 102 aa8.1□□□□□ -1.11
LDLR-205ENST00000557933 KLKP1Q107X0 134 aa8.1□□□□□ -1.11
LDLR-205ENST00000557933 STAB2Q8WWQ8 2551 aa8.1□□□□□ -1.11
LDLR-205ENST00000557933 TRBV7-6A0A0J9YX20 115 aa8.09□□□□□ -1.11
LDLR-205ENST00000557933 A0A0U1RQV1 116 aa8.09□□□□□ -1.11
LDLR-205ENST00000557933 CXCL6P80162 114 aa8.09□□□□□ -1.12
LDLR-205ENST00000557933 LINC00528Q8N1L1 170 aa8.09□□□□□ -1.12
LDLR-205ENST00000557933 ESRGQ1W209 222 aa8.08□□□□□ -1.12
LDLR-205ENST00000557933 CASC10Q5T4H9 136 aa8.08□□□□□ -1.12
LDLR-205ENST00000557933 SERP1Q9Y6X1 66 aa8.08□□□□□ -1.12
LDLR-205ENST00000557933 IGKV4-1P06312 121 aa8.08□□□□□ -1.12
LDLR-205ENST00000557933 DNAH10Q8IVF4 4471 aa8.08□□□□□ -1.12
LDLR-205ENST00000557933 C1orf43Q9BWL3 253 aa8.07□□□□□ -1.12
LDLR-205ENST00000557933 NDUFC2-KCTD14E9PQ53 114 aa8.06□□□□□ -1.12
LDLR-205ENST00000557933 M0R378 163 aa8.06□□□□□ -1.12
LDLR-205ENST00000557933 NKAPP1Q8N9T2 125 aa8.06□□□□□ -1.12
LDLR-205ENST00000557933 SMIM29Q86T20 159 aa8.06□□□□□ -1.12
LDLR-205ENST00000557933 BRK1Q8WUW1 75 aa8.06□□□□□ -1.12
LDLR-205ENST00000557933 C7orf33Q8WU49 177 aa8.06□□□□□ -1.12
LDLR-205ENST00000557933 Q8N377 158 aa8.05□□□□□ -1.12
LDLR-205ENST00000557933 PDE6GP18545 87 aa8.04□□□□□ -1.12
LDLR-205ENST00000557933 MRAPQ8TCY5 172 aa8.04□□□□□ -1.12
LDLR-205ENST00000557933 CMYA5Q8N3K9 4069 aa8.04□□□□□ -1.12
LDLR-205ENST00000557933 EGFEM1PQ0D2K5 195 aa8.03□□□□□ -1.12
LDLR-205ENST00000557933 KRTAP26-1Q6PEX3 210 aa8.03□□□□□ -1.12
LDLR-205ENST00000557933 GVQW2A0A096LPI5 108 aaPredicted RBP8.03□□□□□ -1.12
LDLR-205ENST00000557933 ERC2-IT1O76042 136 aa8.02□□□□□ -1.12
LDLR-205ENST00000557933 SYCNQ0VAF6 134 aa8.02□□□□□ -1.12
LDLR-205ENST00000557933 DNAH3Q8TD57 4116 aa8.02□□□□□ -1.13
LDLR-205ENST00000557933 Q9BRP9 147 aa8.01□□□□□ -1.13
LDLR-205ENST00000557933 A0A1W2PNM2 257 aa8□□□□□ -1.13
LDLR-205ENST00000557933 EPM2AB3EWF7 344 aa8□□□□□ -1.13
LDLR-205ENST00000557933 PRYO14603 147 aa8□□□□□ -1.13
LDLR-205ENST00000557933 OCR1Q9BZK8 76 aa7.99□□□□□ -1.13
LDLR-205ENST00000557933 SMIM26A0A096LP01 95 aa7.99□□□□□ -1.13
LDLR-205ENST00000557933 FUSP35637 526 aaKnown RBP eCLIP7.98□□□□□ -1.13
LDLR-205ENST00000557933 UBE2BP63146 152 aa7.98□□□□□ -1.13
LDLR-205ENST00000557933 K7EQZ3 153 aa7.98□□□□□ -1.13
LDLR-205ENST00000557933 KRTAP10-11P60412 298 aa7.98□□□□□ -1.13
LDLR-205ENST00000557933 C1orf137Q5JT78 98 aa7.98□□□□□ -1.13
LDLR-205ENST00000557933 DEFB131BA0A096LNP1 70 aa7.97□□□□□ -1.13
LDLR-205ENST00000557933 ETDCA0A1B0GVM5 59 aa7.96□□□□□ -1.13
LDLR-205ENST00000557933 IGKV2-24A0A0C4DH68 120 aa7.96□□□□□ -1.14
LDLR-205ENST00000557933 WFDC13Q8IUB5 93 aa7.96□□□□□ -1.14
LDLR-205ENST00000557933 KRTAP21-3Q3LHN1 58 aa7.95□□□□□ -1.14
LDLR-205ENST00000557933 A0A096LNI7 61 aa7.95□□□□□ -1.14
LDLR-205ENST00000557933 KRTAP7-1Q8IUC3 87 aa7.94□□□□□ -1.14
LDLR-205ENST00000557933 PRLHP81277 87 aa7.94□□□□□ -1.14
LDLR-205ENST00000557933 RPL37AP61513 92 aaKnown RBP7.93□□□□□ -1.14
LDLR-205ENST00000557933 Q6ZRX8 168 aa7.92□□□□□ -1.14
LDLR-205ENST00000557933 PRO0628Q9UI54 55 aa7.92□□□□□ -1.14
LDLR-205ENST00000557933 KCNQ1DNQ9H478 68 aa7.92□□□□□ -1.14
LDLR-205ENST00000557933 PSPHP1O15172 72 aa7.92□□□□□ -1.14
LDLR-205ENST00000557933 BCE1O60756 84 aa7.91□□□□□ -1.14
LDLR-205ENST00000557933 DSCR10P59022 87 aa7.91□□□□□ -1.14
LDLR-205ENST00000557933 C11orf45Q8TAV5 145 aa7.9□□□□□ -1.14
LDLR-205ENST00000557933 NDUFC1O43677 76 aa7.9□□□□□ -1.15
LDLR-205ENST00000557933 IGLV5-48A0A075B6I7 105 aa7.88□□□□□ -1.15
LDLR-205ENST00000557933 H3BQ85 93 aa7.88□□□□□ -1.15
LDLR-205ENST00000557933 IGLV2-33A0A075B6J2 118 aaPredicted RBP7.88□□□□□ -1.15
LDLR-205ENST00000557933 IGLV1-50A0A075B6I6 118 aa7.87□□□□□ -1.15
LDLR-205ENST00000557933 A0A087WSZ3 146 aa7.87□□□□□ -1.15
LDLR-205ENST00000557933 LINC01556Q5JQF7 62 aa7.87□□□□□ -1.15
LDLR-205ENST00000557933 Q8NBF4 154 aa7.87□□□□□ -1.15
LDLR-205ENST00000557933 C1orf64Q8NEQ6 169 aa7.86□□□□□ -1.15
LDLR-205ENST00000557933 LINC00476Q8WZB0 136 aa7.86□□□□□ -1.15
LDLR-205ENST00000557933 LINC00588Q9Y4M8 146 aa7.86□□□□□ -1.15
LDLR-205ENST00000557933 MRPL55Q7Z7F7 128 aaKnown RBP7.85□□□□□ -1.15
LDLR-205ENST00000557933 A8MU10 97 aa7.85□□□□□ -1.15
LDLR-205ENST00000557933 PSCAO43653 123 aa7.85□□□□□ -1.15
LDLR-205ENST00000557933 DNAH9Q9NYC9 4486 aa7.84□□□□□ -1.15
LDLR-205ENST00000557933 KRTAP4-16G5E9R7 235 aaPredicted RBP7.84□□□□□ -1.15
LDLR-205ENST00000557933 MDFIQ99750 246 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms