RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 AKR1D1P51857 326 aa9.25□□□□□ -0.93
CCDC88C-209ENST00000554872 LINC00308Q8TCZ7 52 aa9.25□□□□□ -0.93
CCDC88C-209ENST00000554872 Q9BRP9 147 aa9.25□□□□□ -0.93
CCDC88C-209ENST00000554872 C20orf202A1L168 122 aa9.24□□□□□ -0.93
CCDC88C-209ENST00000554872 C5orf52A6NGY3 159 aa9.24□□□□□ -0.93
CCDC88C-209ENST00000554872 ZNF815PA8K554 130 aa9.24□□□□□ -0.93
CCDC88C-209ENST00000554872 JOSD1Q15040 202 aaPredicted RBP9.24□□□□□ -0.93
CCDC88C-209ENST00000554872 PPDPFQ9H3Y8 114 aa9.24□□□□□ -0.93
CCDC88C-209ENST00000554872 ZNF73O43830 326 aaPredicted RBP9.23□□□□□ -0.93
CCDC88C-209ENST00000554872 KRTDAPP60985 99 aa9.23□□□□□ -0.93
CCDC88C-209ENST00000554872 ERC2-IT1O76042 136 aa9.22□□□□□ -0.93
CCDC88C-209ENST00000554872 NPC2P61916 151 aa9.22□□□□□ -0.93
CCDC88C-209ENST00000554872 TPRXLQ17RH7 258 aa9.22□□□□□ -0.93
CCDC88C-209ENST00000554872 SPANXDQ9BXN6 97 aa9.21□□□□□ -0.94
CCDC88C-209ENST00000554872 RPS29P62273 56 aaKnown RBP9.19□□□□□ -0.94
CCDC88C-209ENST00000554872 LINC00518Q8N0U6 118 aa9.19□□□□□ -0.94
CCDC88C-209ENST00000554872 Q8NBF4 154 aa9.19□□□□□ -0.94
CCDC88C-209ENST00000554872 TTTY13Q9BZ97 58 aa9.19□□□□□ -0.94
CCDC88C-209ENST00000554872 SPINK1P00995 79 aa9.18□□□□□ -0.94
CCDC88C-209ENST00000554872 GAGE2AQ6NT46 116 aa9.18□□□□□ -0.94
CCDC88C-209ENST00000554872 SSBP3-AS1Q7Z2R9 100 aa9.18□□□□□ -0.94
CCDC88C-209ENST00000554872 RETNLBQ9BQ08 111 aa9.18□□□□□ -0.94
CCDC88C-209ENST00000554872 HINT1P49773 126 aaPredicted RBP9.17□□□□□ -0.94
CCDC88C-209ENST00000554872 SNRPEP62304 92 aaKnown RBP9.17□□□□□ -0.94
CCDC88C-209ENST00000554872 ANKRD39Q53RE8 183 aa9.17□□□□□ -0.94
CCDC88C-209ENST00000554872 C4orf48Q5BLP8 95 aa9.17□□□□□ -0.94
CCDC88C-209ENST00000554872 Q6ZVH6 145 aa9.17□□□□□ -0.94
CCDC88C-209ENST00000554872 FP248Q71RG6 208 aaPredicted RBP9.17□□□□□ -0.94
CCDC88C-209ENST00000554872 COPS9Q8WXC6 57 aa9.17□□□□□ -0.94
CCDC88C-209ENST00000554872 IFITM1P13164 125 aa9.16□□□□□ -0.94
CCDC88C-209ENST00000554872 S100A1P23297 94 aa9.16□□□□□ -0.94
CCDC88C-209ENST00000554872 IGLV7-46A0A075B6I9 117 aa9.15□□□□□ -0.94
CCDC88C-209ENST00000554872 SCGB1D4Q6XE38 83 aa9.15□□□□□ -0.94
CCDC88C-209ENST00000554872 DHRS4-AS1Q9P1J3 65 aa9.14□□□□□ -0.95
CCDC88C-209ENST00000554872 SPRR1BP22528 89 aa9.13□□□□□ -0.95
CCDC88C-209ENST00000554872 MOBPQ13875 183 aa9.13□□□□□ -0.95
CCDC88C-209ENST00000554872 HIST3H2BBQ8N257 126 aa9.13□□□□□ -0.95
CCDC88C-209ENST00000554872 OR13C6PQ8NH95 151 aa9.13□□□□□ -0.95
CCDC88C-209ENST00000554872 TRBV7-6A0A0J9YX20 115 aa9.12□□□□□ -0.95
CCDC88C-209ENST00000554872 ELOF1P60002 83 aaKnown RBP9.12□□□□□ -0.95
CCDC88C-209ENST00000554872 IGLV9-49A0A0B4J1Y8 123 aa9.11□□□□□ -0.95
CCDC88C-209ENST00000554872 ATOH7Q8N100 152 aa9.11□□□□□ -0.95
CCDC88C-209ENST00000554872 HIST1H2BLQ99880 126 aa9.11□□□□□ -0.95
CCDC88C-209ENST00000554872 PCP2Q8IVA1 136 aa9.1□□□□□ -0.95
CCDC88C-209ENST00000554872 C6orf99Q4VX62 202 aa9.09□□□□□ -0.95
CCDC88C-209ENST00000554872 SLC25A34Q6PIV7 304 aa9.09□□□□□ -0.95
CCDC88C-209ENST00000554872 ST20-AS1Q8NBB2 130 aa9.09□□□□□ -0.95
CCDC88C-209ENST00000554872 COX7BP24311 80 aa9.08□□□□□ -0.96
CCDC88C-209ENST00000554872 CDIP1Q9H305 208 aa9.08□□□□□ -0.96
CCDC88C-209ENST00000554872 S100A2P29034 98 aa9.07□□□□□ -0.96
CCDC88C-209ENST00000554872 Q8N377 158 aa9.07□□□□□ -0.96
CCDC88C-209ENST00000554872 MUC2Q02817 5179 aa9.07□□□□□ -0.96
CCDC88C-209ENST00000554872 A0A1B0GWB2 263 aa9.05□□□□□ -0.96
CCDC88C-209ENST00000554872 KRTAP13-3Q3SY46 172 aa9.05□□□□□ -0.96
CCDC88C-209ENST00000554872 MUSTN1Q8IVN3 82 aa9.05□□□□□ -0.96
CCDC88C-209ENST00000554872 SLC25A20O43772 301 aa9.04□□□□□ -0.96
CCDC88C-209ENST00000554872 C9orf153Q5TBE3 101 aa9.04□□□□□ -0.96
CCDC88C-209ENST00000554872 TRAV13-2A0A0B4J235 113 aa9.03□□□□□ -0.96
CCDC88C-209ENST00000554872 A0A0U1RQV1 116 aa9.03□□□□□ -0.96
CCDC88C-209ENST00000554872 A4D1N5 150 aa9.03□□□□□ -0.96
CCDC88C-209ENST00000554872 HSBP1L1C9JCN9 74 aa9.03□□□□□ -0.96
CCDC88C-209ENST00000554872 S100A6P06703 90 aa9.03□□□□□ -0.96
CCDC88C-209ENST00000554872 LAMTOR3Q9UHA4 124 aa9.02□□□□□ -0.97
CCDC88C-209ENST00000554872 A6NDN8 102 aa9.01□□□□□ -0.97
CCDC88C-209ENST00000554872 IGLV5-48A0A075B6I7 105 aa9□□□□□ -0.97
CCDC88C-209ENST00000554872 TEX49A0A1B0GTD5 131 aa8.99□□□□□ -0.97
CCDC88C-209ENST00000554872 MUC17Q685J3 4493 aa8.98□□□□□ -0.97
CCDC88C-209ENST00000554872 LINC01547P58512 204 aaPredicted RBP8.97□□□□□ -0.97
CCDC88C-209ENST00000554872 CD164Q04900 197 aa8.97□□□□□ -0.97
CCDC88C-209ENST00000554872 SMIM11BQ8TCY0 68 aa8.97□□□□□ -0.97
CCDC88C-209ENST00000554872 LIMD2Q9BT23 127 aa8.97□□□□□ -0.97
CCDC88C-209ENST00000554872 NHP2Q9NX24 153 aaKnown RBP8.97□□□□□ -0.97
CCDC88C-209ENST00000554872 TAL2Q16559 108 aa8.96□□□□□ -0.98
CCDC88C-209ENST00000554872 SMIM29Q86T20 159 aa8.95□□□□□ -0.98
CCDC88C-209ENST00000554872 ASB16-AS1Q495Z4 193 aa8.94□□□□□ -0.98
CCDC88C-209ENST00000554872 PRO1933Q9H354 126 aa8.94□□□□□ -0.98
CCDC88C-209ENST00000554872 DLEU1O43261 78 aa8.93□□□□□ -0.98
CCDC88C-209ENST00000554872 Q5XG85 94 aa8.93□□□□□ -0.98
CCDC88C-209ENST00000554872 Q1RN00 199 aa8.92□□□□□ -0.98
CCDC88C-209ENST00000554872 SCGB1D1O95968 90 aa8.91□□□□□ -0.98
CCDC88C-209ENST00000554872 COX8AP10176 69 aa8.91□□□□□ -0.98
CCDC88C-209ENST00000554872 VAMP3Q15836 100 aa8.91□□□□□ -0.98
CCDC88C-209ENST00000554872 DEFB105AQ8NG35 78 aa8.91□□□□□ -0.98
CCDC88C-209ENST00000554872 XP32Q5T750 250 aa8.9□□□□□ -0.98
CCDC88C-209ENST00000554872 LINC00575Q6W349 94 aa8.89□□□□□ -0.99
CCDC88C-209ENST00000554872 SEC61BP60468 96 aaKnown RBP8.88□□□□□ -0.99
CCDC88C-209ENST00000554872 H7C2G1 150 aa8.87□□□□□ -0.99
CCDC88C-209ENST00000554872 LCE2AQ5TA79 106 aaPredicted RBP8.87□□□□□ -0.99
CCDC88C-209ENST00000554872 HIST1H4GQ99525 98 aa8.86□□□□□ -0.99
CCDC88C-209ENST00000554872 HIGD1BQ9P298 99 aa8.85□□□□□ -0.99
CCDC88C-209ENST00000554872 BVES-AS1Q5T3Y7 98 aa8.84□□□□□ -0.99
CCDC88C-209ENST00000554872 HRCT1Q6UXD1 115 aa8.84□□□□□ -0.99
CCDC88C-209ENST00000554872 hADV29S1A0JD25 119 aa8.83□□□□□ -1
CCDC88C-209ENST00000554872 FAT4Q6V0I7 4981 aa8.82□□□□□ -1
CCDC88C-209ENST00000554872 IGLV8-61A0A075B6I0 122 aa8.82□□□□□ -1
CCDC88C-209ENST00000554872 Q6ZQY7 126 aa8.82□□□□□ -1
CCDC88C-209ENST00000554872 PPDPFLQ8WWR9 84 aa8.82□□□□□ -1
CCDC88C-209ENST00000554872 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.81□□□□□ -1
CCDC88C-209ENST00000554872 F8WEM9 126 aa8.8□□□□□ -1
CCDC88C-209ENST00000554872 SPATA45Q537H7 98 aa8.79□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms