RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 CTAG1AP78358 180 aa9.01□□□□□ -0.97
SHMT2-204ENST00000553324 JOSD1Q15040 202 aaPredicted RBP9.01□□□□□ -0.97
SHMT2-204ENST00000553324 KRTAP13-2Q52LG2 175 aa9.01□□□□□ -0.97
SHMT2-204ENST00000553324 LINC00518Q8N0U6 118 aa9.01□□□□□ -0.97
SHMT2-204ENST00000553324 SPRR4Q96PI1 79 aa9.01□□□□□ -0.97
SHMT2-204ENST00000553324 LRP2P98164 4655 aa9.01□□□□□ -0.97
SHMT2-204ENST00000553324 EIF4EBP3O60516 100 aaPredicted RBP9□□□□□ -0.97
SHMT2-204ENST00000553324 Q6ZVH6 145 aa9□□□□□ -0.97
SHMT2-204ENST00000553324 HIST1H2BLQ99880 126 aa9□□□□□ -0.97
SHMT2-204ENST00000553324 TTTY13Q9BZ97 58 aa9□□□□□ -0.97
SHMT2-204ENST00000553324 ANKRD39Q53RE8 183 aa8.99□□□□□ -0.97
SHMT2-204ENST00000553324 ATOH7Q8N100 152 aa8.99□□□□□ -0.97
SHMT2-204ENST00000553324 SPANXDQ9BXN6 97 aa8.99□□□□□ -0.97
SHMT2-204ENST00000553324 ZNF73O43830 326 aaPredicted RBP8.98□□□□□ -0.97
SHMT2-204ENST00000553324 TSPAN13O95857 204 aa8.98□□□□□ -0.97
SHMT2-204ENST00000553324 IFITM1P13164 125 aa8.98□□□□□ -0.97
SHMT2-204ENST00000553324 Q6ZRX8 168 aa8.98□□□□□ -0.97
SHMT2-204ENST00000553324 LINC00304Q8N9R0 145 aa8.98□□□□□ -0.97
SHMT2-204ENST00000553324 OR13C6PQ8NH95 151 aa8.98□□□□□ -0.97
SHMT2-204ENST00000553324 HSBP1L1C9JCN9 74 aa8.97□□□□□ -0.97
SHMT2-204ENST00000553324 PPDPFQ9H3Y8 114 aa8.97□□□□□ -0.97
SHMT2-204ENST00000553324 PRR4Q16378 134 aa8.95□□□□□ -0.98
SHMT2-204ENST00000553324 SPAG11AQ6PDA7 123 aa8.95□□□□□ -0.98
SHMT2-204ENST00000553324 C5orf52A6NGY3 159 aa8.94□□□□□ -0.98
SHMT2-204ENST00000553324 LINC00483Q53H64 154 aa8.94□□□□□ -0.98
SHMT2-204ENST00000553324 PCP2Q8IVA1 136 aa8.94□□□□□ -0.98
SHMT2-204ENST00000553324 Q9BRP9 147 aa8.94□□□□□ -0.98
SHMT2-204ENST00000553324 C4orf48Q5BLP8 95 aa8.93□□□□□ -0.98
SHMT2-204ENST00000553324 GAGE2AQ6NT46 116 aa8.93□□□□□ -0.98
SHMT2-204ENST00000553324 C3orf22Q8N5N4 141 aa8.93□□□□□ -0.98
SHMT2-204ENST00000553324 ERC2-IT1O76042 136 aa8.91□□□□□ -0.98
SHMT2-204ENST00000553324 MUSTN1Q8IVN3 82 aa8.9□□□□□ -0.98
SHMT2-204ENST00000553324 DHRS4-AS1Q9P1J3 65 aa8.9□□□□□ -0.98
SHMT2-204ENST00000553324 SCGB1D1O95968 90 aa8.89□□□□□ -0.99
SHMT2-204ENST00000553324 TMA7Q9Y2S6 64 aaKnown RBP8.89□□□□□ -0.99
SHMT2-204ENST00000553324 LPAP08519 4548 aa8.89□□□□□ -0.99
SHMT2-204ENST00000553324 SSBP3-AS1Q7Z2R9 100 aa8.88□□□□□ -0.99
SHMT2-204ENST00000553324 TRAV13-2A0A0B4J235 113 aa8.87□□□□□ -0.99
SHMT2-204ENST00000553324 TRBV7-6A0A0J9YX20 115 aa8.87□□□□□ -0.99
SHMT2-204ENST00000553324 A6NDN8 102 aa8.87□□□□□ -0.99
SHMT2-204ENST00000553324 COX7BP24311 80 aa8.86□□□□□ -0.99
SHMT2-204ENST00000553324 C6orf99Q4VX62 202 aa8.86□□□□□ -0.99
SHMT2-204ENST00000553324 Q8NBF4 154 aa8.86□□□□□ -0.99
SHMT2-204ENST00000553324 SPINK1P00995 79 aa8.85□□□□□ -0.99
SHMT2-204ENST00000553324 ELOF1P60002 83 aaKnown RBP8.85□□□□□ -0.99
SHMT2-204ENST00000553324 SLC25A34Q6PIV7 304 aa8.85□□□□□ -0.99
SHMT2-204ENST00000553324 IGLV9-49A0A0B4J1Y8 123 aa8.84□□□□□ -0.99
SHMT2-204ENST00000553324 A0A1B0GWB2 263 aa8.82□□□□□ -1
SHMT2-204ENST00000553324 A4D1N5 150 aa8.82□□□□□ -1
SHMT2-204ENST00000553324 MOBPQ13875 183 aa8.82□□□□□ -1
SHMT2-204ENST00000553324 LOC105371267A0A1B0GV96 52 aa8.81□□□□□ -1
SHMT2-204ENST00000553324 ST20-AS1Q8NBB2 130 aa8.81□□□□□ -1
SHMT2-204ENST00000553324 COX8AP10176 69 aa8.8□□□□□ -1
SHMT2-204ENST00000553324 SPRR1BP22528 89 aa8.8□□□□□ -1
SHMT2-204ENST00000553324 RNF213Q63HN8 5207 aa8.8□□□□□ -1
SHMT2-204ENST00000553324 DLEU1O43261 78 aa8.79□□□□□ -1
SHMT2-204ENST00000553324 RPS29P62273 56 aaKnown RBP8.79□□□□□ -1
SHMT2-204ENST00000553324 TAL2Q16559 108 aa8.79□□□□□ -1
SHMT2-204ENST00000553324 C9orf153Q5TBE3 101 aa8.79□□□□□ -1
SHMT2-204ENST00000553324 RETNLBQ9BQ08 111 aa8.79□□□□□ -1
SHMT2-204ENST00000553324 LAMTOR3Q9UHA4 124 aa8.79□□□□□ -1
SHMT2-204ENST00000553324 IGLV7-46A0A075B6I9 117 aa8.78□□□□□ -1
SHMT2-204ENST00000553324 VAMP3Q15836 100 aa8.78□□□□□ -1
SHMT2-204ENST00000553324 NHP2Q9NX24 153 aaKnown RBP8.78□□□□□ -1
SHMT2-204ENST00000553324 FP248Q71RG6 208 aaPredicted RBP8.77□□□□□ -1.01
SHMT2-204ENST00000553324 SMIM11BQ8TCY0 68 aa8.77□□□□□ -1.01
SHMT2-204ENST00000553324 HIST1H4GQ99525 98 aa8.77□□□□□ -1.01
SHMT2-204ENST00000553324 TEX49A0A1B0GTD5 131 aa8.76□□□□□ -1.01
SHMT2-204ENST00000553324 TPRXLQ17RH7 258 aa8.75□□□□□ -1.01
SHMT2-204ENST00000553324 SLC25A20O43772 301 aa8.74□□□□□ -1.01
SHMT2-204ENST00000553324 DEFB105AQ8NG35 78 aa8.74□□□□□ -1.01
SHMT2-204ENST00000553324 VAMP8Q9BV40 100 aa8.73□□□□□ -1.01
SHMT2-204ENST00000553324 PAM16Q9Y3D7 125 aa8.73□□□□□ -1.01
SHMT2-204ENST00000553324 SPATA45Q537H7 98 aa8.72□□□□□ -1.01
SHMT2-204ENST00000553324 C14orf144Q96I85 54 aa8.72□□□□□ -1.01
SHMT2-204ENST00000553324 CDIP1Q9H305 208 aa8.72□□□□□ -1.01
SHMT2-204ENST00000553324 HIGD1BQ9P298 99 aa8.71□□□□□ -1.02
SHMT2-204ENST00000553324 IGLV5-48A0A075B6I7 105 aa8.7□□□□□ -1.02
SHMT2-204ENST00000553324 Q8N377 158 aa8.7□□□□□ -1.02
SHMT2-204ENST00000553324 PRO1933Q9H354 126 aa8.69□□□□□ -1.02
SHMT2-204ENST00000553324 Q1RN00 199 aa8.68□□□□□ -1.02
SHMT2-204ENST00000553324 BVES-AS1Q5T3Y7 98 aa8.68□□□□□ -1.02
SHMT2-204ENST00000553324 LINC00575Q6W349 94 aa8.67□□□□□ -1.02
SHMT2-204ENST00000553324 LIMD2Q9BT23 127 aa8.67□□□□□ -1.02
SHMT2-204ENST00000553324 hADV29S1A0JD25 119 aa8.66□□□□□ -1.02
SHMT2-204ENST00000553324 LINC01547P58512 204 aaPredicted RBP8.66□□□□□ -1.02
SHMT2-204ENST00000553324 CD164Q04900 197 aa8.66□□□□□ -1.02
SHMT2-204ENST00000553324 SMIM29Q86T20 159 aa8.65□□□□□ -1.02
SHMT2-204ENST00000553324 RAB37Q96AX2 223 aa8.65□□□□□ -1.02
SHMT2-204ENST00000553324 C12orf57Q99622 126 aa8.65□□□□□ -1.02
SHMT2-204ENST00000553324 CFC1BP0CG36 223 aa8.64□□□□□ -1.03
SHMT2-204ENST00000553324 CFC1P0CG37 223 aa8.64□□□□□ -1.03
SHMT2-204ENST00000553324 SNCGO76070 127 aa8.63□□□□□ -1.03
SHMT2-204ENST00000553324 MUC2Q02817 5179 aa8.62□□□□□ -1.03
SHMT2-204ENST00000553324 A0A0B4J2C4 111 aa8.62□□□□□ -1.03
SHMT2-204ENST00000553324 TMEM238LA0A1B0GVL6 79 aa8.62□□□□□ -1.03
SHMT2-204ENST00000553324 A6NJY4 79 aa8.62□□□□□ -1.03
SHMT2-204ENST00000553324 H7C2G1 150 aa8.62□□□□□ -1.03
SHMT2-204ENST00000553324 HRCT1Q6UXD1 115 aa8.62□□□□□ -1.03
SHMT2-204ENST00000553324 C2orf91Q6ZV80 131 aa8.62□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms