RNA–Protein interactions for RNA: ENST00000546974.1

COL2A1-209, Transcript of collagen type II alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL2A1, Length 703 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-209ENST00000546974 S100A7L2Q5SY68 101 aa8.15□□□□□ -1.1
COL2A1-209ENST00000546974 Q6ZRX8 168 aa8.15□□□□□ -1.1
COL2A1-209ENST00000546974 SSBP3-AS1Q7Z2R9 100 aa8.15□□□□□ -1.1
COL2A1-209ENST00000546974 Q9BRP9 147 aa8.15□□□□□ -1.1
COL2A1-209ENST00000546974 LCE2AQ5TA79 106 aaPredicted RBP8.14□□□□□ -1.11
COL2A1-209ENST00000546974 TRAV23DV6A0A075B6W5 121 aa8.12□□□□□ -1.11
COL2A1-209ENST00000546974 IGLV9-49A0A0B4J1Y8 123 aa8.12□□□□□ -1.11
COL2A1-209ENST00000546974 A0A0J9YXY3 114 aa8.12□□□□□ -1.11
COL2A1-209ENST00000546974 C5orf52A6NGY3 159 aa8.12□□□□□ -1.11
COL2A1-209ENST00000546974 E9PLD3 99 aa8.12□□□□□ -1.11
COL2A1-209ENST00000546974 RPS29P62273 56 aaKnown RBP8.12□□□□□ -1.11
COL2A1-209ENST00000546974 MOBPQ13875 183 aa8.12□□□□□ -1.11
COL2A1-209ENST00000546974 JOSD1Q15040 202 aaPredicted RBP8.12□□□□□ -1.11
COL2A1-209ENST00000546974 KRTAP13-3Q3SY46 172 aa8.12□□□□□ -1.11
COL2A1-209ENST00000546974 SOSTDC1Q6X4U4 206 aa8.12□□□□□ -1.11
COL2A1-209ENST00000546974 HIST3H2BBQ8N257 126 aa8.12□□□□□ -1.11
COL2A1-209ENST00000546974 ADAMTSL4-AS1Q5T5F5 129 aa8.11□□□□□ -1.11
COL2A1-209ENST00000546974 NPC2P61916 151 aa8.1□□□□□ -1.11
COL2A1-209ENST00000546974 ZNF73O43830 326 aaPredicted RBP8.09□□□□□ -1.11
COL2A1-209ENST00000546974 EIF4EBP3O60516 100 aaPredicted RBP8.09□□□□□ -1.11
COL2A1-209ENST00000546974 Q8N377 158 aa8.09□□□□□ -1.11
COL2A1-209ENST00000546974 CBY1Q9Y3M2 126 aa8.09□□□□□ -1.11
COL2A1-209ENST00000546974 SNRPEP62304 92 aaKnown RBP8.08□□□□□ -1.12
COL2A1-209ENST00000546974 HIST1H2BLQ99880 126 aa8.08□□□□□ -1.12
COL2A1-209ENST00000546974 SYS1-DBNDD2H3BUS1 97 aa8.07□□□□□ -1.12
COL2A1-209ENST00000546974 SLC25A20O43772 301 aa8.06□□□□□ -1.12
COL2A1-209ENST00000546974 HINT1P49773 126 aaPredicted RBP8.06□□□□□ -1.12
COL2A1-209ENST00000546974 ASB16-AS1Q495Z4 193 aa8.06□□□□□ -1.12
COL2A1-209ENST00000546974 TIMM17BO60830 172 aa8.05□□□□□ -1.12
COL2A1-209ENST00000546974 S100A6P06703 90 aa8.05□□□□□ -1.12
COL2A1-209ENST00000546974 LINC00308Q8TCZ7 52 aa8.05□□□□□ -1.12
COL2A1-209ENST00000546974 LITAFQ99732 161 aa8.05□□□□□ -1.12
COL2A1-209ENST00000546974 SPANXCQ9NY87 97 aa8.05□□□□□ -1.12
COL2A1-209ENST00000546974 C3orf79P0CE67 100 aa8.04□□□□□ -1.12
COL2A1-209ENST00000546974 C9orf153Q5TBE3 101 aa8.04□□□□□ -1.12
COL2A1-209ENST00000546974 LINC01545Q5VT33 79 aa8.04□□□□□ -1.12
COL2A1-209ENST00000546974 ST20-AS1Q8NBB2 130 aa8.04□□□□□ -1.12
COL2A1-209ENST00000546974 KRTAP9-2Q9BYQ4 174 aa8.04□□□□□ -1.12
COL2A1-209ENST00000546974 PET117Q6UWS5 81 aa8.02□□□□□ -1.13
COL2A1-209ENST00000546974 OR13C6PQ8NH95 151 aa8.02□□□□□ -1.13
COL2A1-209ENST00000546974 SEC61BP60468 96 aaKnown RBP8.01□□□□□ -1.13
COL2A1-209ENST00000546974 DHRS4-AS1Q9P1J3 65 aa8.01□□□□□ -1.13
COL2A1-209ENST00000546974 ZNF815PA8K554 130 aa8□□□□□ -1.13
COL2A1-209ENST00000546974 SPRR1BP22528 89 aa8□□□□□ -1.13
COL2A1-209ENST00000546974 SPANXDQ9BXN6 97 aa8□□□□□ -1.13
COL2A1-209ENST00000546974 TMA7Q9Y2S6 64 aaKnown RBP8□□□□□ -1.13
COL2A1-209ENST00000546974 S100A2P29034 98 aa7.99□□□□□ -1.13
COL2A1-209ENST00000546974 SLC25A34Q6PIV7 304 aa7.99□□□□□ -1.13
COL2A1-209ENST00000546974 LINC00518Q8N0U6 118 aa7.99□□□□□ -1.13
COL2A1-209ENST00000546974 KRTDAPP60985 99 aa7.97□□□□□ -1.13
COL2A1-209ENST00000546974 XP32Q5T750 250 aa7.97□□□□□ -1.13
COL2A1-209ENST00000546974 TTTY13Q9BZ97 58 aa7.97□□□□□ -1.13
COL2A1-209ENST00000546974 COX7BP24311 80 aa7.96□□□□□ -1.14
COL2A1-209ENST00000546974 ELOF1P60002 83 aaKnown RBP7.96□□□□□ -1.14
COL2A1-209ENST00000546974 KRTAP4-1Q9BYQ7 146 aa7.96□□□□□ -1.14
COL2A1-209ENST00000546974 LAMTOR3Q9UHA4 124 aa7.96□□□□□ -1.14
COL2A1-209ENST00000546974 LIMD2Q9BT23 127 aa7.95□□□□□ -1.14
COL2A1-209ENST00000546974 C6orf99Q4VX62 202 aa7.94□□□□□ -1.14
COL2A1-209ENST00000546974 TRBV7-6A0A0J9YX20 115 aa7.92□□□□□ -1.14
COL2A1-209ENST00000546974 LINC01547P58512 204 aaPredicted RBP7.92□□□□□ -1.14
COL2A1-209ENST00000546974 TAL2Q16559 108 aa7.92□□□□□ -1.14
COL2A1-209ENST00000546974 HRCT1Q6UXD1 115 aa7.92□□□□□ -1.14
COL2A1-209ENST00000546974 SCGB1D4Q6XE38 83 aa7.92□□□□□ -1.14
COL2A1-209ENST00000546974 COPS9Q8WXC6 57 aa7.92□□□□□ -1.14
COL2A1-209ENST00000546974 IFITM1P13164 125 aa7.91□□□□□ -1.14
COL2A1-209ENST00000546974 TEX49A0A1B0GTD5 131 aa7.9□□□□□ -1.14
COL2A1-209ENST00000546974 C20orf202A1L168 122 aa7.9□□□□□ -1.14
COL2A1-209ENST00000546974 AKR1D1P51857 326 aa7.9□□□□□ -1.14
COL2A1-209ENST00000546974 CD164Q04900 197 aa7.9□□□□□ -1.14
COL2A1-209ENST00000546974 Q6ZVH6 145 aa7.9□□□□□ -1.14
COL2A1-209ENST00000546974 A0A1B0GWB2 263 aa7.89□□□□□ -1.15
COL2A1-209ENST00000546974 ANKRD39Q53RE8 183 aa7.89□□□□□ -1.15
COL2A1-209ENST00000546974 DEFB105AQ8NG35 78 aa7.89□□□□□ -1.15
COL2A1-209ENST00000546974 PRO1933Q9H354 126 aa7.89□□□□□ -1.15
COL2A1-209ENST00000546974 Q1RN00 199 aa7.88□□□□□ -1.15
COL2A1-209ENST00000546974 PYY3Q5JQD4 70 aa7.88□□□□□ -1.15
COL2A1-209ENST00000546974 LOC105371267A0A1B0GV96 52 aa7.87□□□□□ -1.15
COL2A1-209ENST00000546974 ATOH7Q8N100 152 aa7.87□□□□□ -1.15
COL2A1-209ENST00000546974 A6NDN8 102 aa7.86□□□□□ -1.15
COL2A1-209ENST00000546974 SMIM29Q86T20 159 aa7.86□□□□□ -1.15
COL2A1-209ENST00000546974 MUSTN1Q8IVN3 82 aa7.86□□□□□ -1.15
COL2A1-209ENST00000546974 IGLV5-48A0A075B6I7 105 aa7.85□□□□□ -1.15
COL2A1-209ENST00000546974 A4D1N5 150 aa7.85□□□□□ -1.15
COL2A1-209ENST00000546974 H7C2G1 150 aa7.84□□□□□ -1.15
COL2A1-209ENST00000546974 SCGB1D1O95968 90 aa7.84□□□□□ -1.15
COL2A1-209ENST00000546974 Q5XG85 94 aa7.84□□□□□ -1.15
COL2A1-209ENST00000546974 PCP2Q8IVA1 136 aa7.84□□□□□ -1.15
COL2A1-209ENST00000546974 TRAV13-2A0A0B4J235 113 aa7.83□□□□□ -1.16
COL2A1-209ENST00000546974 C9orf92A6NGG3 77 aa7.83□□□□□ -1.16
COL2A1-209ENST00000546974 NHP2Q9NX24 153 aaKnown RBP7.82□□□□□ -1.16
COL2A1-209ENST00000546974 PCOTHQ58A44 107 aa7.81□□□□□ -1.16
COL2A1-209ENST00000546974 KRTAP9-6A0A140TA67 174 aa7.8□□□□□ -1.16
COL2A1-209ENST00000546974 SMIM11BQ8TCY0 68 aa7.8□□□□□ -1.16
COL2A1-209ENST00000546974 IGLV8-61A0A075B6I0 122 aa7.79□□□□□ -1.16
COL2A1-209ENST00000546974 LCE2CQ5TA81 110 aa7.79□□□□□ -1.16
COL2A1-209ENST00000546974 C1orf195Q5TG92 126 aa7.78□□□□□ -1.16
COL2A1-209ENST00000546974 A0A0G2JQZ4 141 aa7.77□□□□□ -1.17
COL2A1-209ENST00000546974 SMIM6P0DI80 62 aa7.76□□□□□ -1.17
COL2A1-209ENST00000546974 VAMP3Q15836 100 aa7.76□□□□□ -1.17
COL2A1-209ENST00000546974 KRTAP19-2Q3LHN2 52 aa7.76□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms