RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 UBR1Q8IWV7 1749 aa-0.41□□□□□ -2.47
VPS13A-213ENST00000539950 USP32Q8NFA0 1604 aa-0.41□□□□□ -2.47
VPS13A-213ENST00000539950 COL14A1Q05707 1796 aaKnown RBP-0.41□□□□□ -2.47
VPS13A-213ENST00000539950 NEXMIFQ5QGS0 1516 aa-0.41□□□□□ -2.48
VPS13A-213ENST00000539950 LRRC7Q96NW7 1537 aa-0.41□□□□□ -2.48
VPS13A-213ENST00000539950 PKIAP61925 76 aa-0.41□□□□□ -2.48
VPS13A-213ENST00000539950 SPRR2FQ96RM1 72 aa-0.41□□□□□ -2.48
VPS13A-213ENST00000539950 C20orf78Q9BR46 151 aa-0.41□□□□□ -2.48
VPS13A-213ENST00000539950 RGPD1P0DJD0 1748 aa-0.41□□□□□ -2.48
VPS13A-213ENST00000539950 PCLOQ9Y6V0 5065 aa-0.41□□□□□ -2.48
VPS13A-213ENST00000539950 CCNB3Q8WWL7 1395 aa-0.42□□□□□ -2.48
VPS13A-213ENST00000539950 ABCC3O15438 1527 aa-0.42□□□□□ -2.48
VPS13A-213ENST00000539950 WIZO95785 1651 aa-0.42□□□□□ -2.48
VPS13A-213ENST00000539950 KIF20BQ96Q89 1820 aa-0.42□□□□□ -2.48
VPS13A-213ENST00000539950 A0A1B0GUT8 65 aa-0.42□□□□□ -2.48
VPS13A-213ENST00000539950 PLGLAQ15195 96 aa-0.42□□□□□ -2.48
VPS13A-213ENST00000539950 HEPN1Q6WQI6 88 aa-0.42□□□□□ -2.48
VPS13A-213ENST00000539950 FAT3Q8TDW7 4589 aa-0.42□□□□□ -2.48
VPS13A-213ENST00000539950 PLXNC1O60486 1568 aa-0.42□□□□□ -2.48
VPS13A-213ENST00000539950 TIAM2Q8IVF5 1701 aa-0.42□□□□□ -2.48
VPS13A-213ENST00000539950 TMEM131LA2VDJ0 1609 aa-0.42□□□□□ -2.48
VPS13A-213ENST00000539950 MXRA5Q9NR99 2828 aa-0.42□□□□□ -2.48
VPS13A-213ENST00000539950 PKD1P98161 4303 aa-0.43□□□□□ -2.48
VPS13A-213ENST00000539950 TTC37Q6PGP7 1564 aa-0.43□□□□□ -2.48
VPS13A-213ENST00000539950 SMIM11AP58511 58 aa-0.43□□□□□ -2.48
VPS13A-213ENST00000539950 PYY3Q5JQD4 70 aa-0.43□□□□□ -2.48
VPS13A-213ENST00000539950 SPTBN4Q9H254 2564 aa-0.43□□□□□ -2.48
VPS13A-213ENST00000539950 RGPD2P0DJD1 1756 aa-0.43□□□□□ -2.48
VPS13A-213ENST00000539950 AKAP12Q02952 1782 aa-0.43□□□□□ -2.48
VPS13A-213ENST00000539950 TNRC18O15417 2968 aaPredicted RBP-0.43□□□□□ -2.48
VPS13A-213ENST00000539950 MAGI3Q5TCQ9 1506 aa-0.43□□□□□ -2.48
VPS13A-213ENST00000539950 PLIN4Q96Q06 1357 aa-0.44□□□□□ -2.48
VPS13A-213ENST00000539950 POLR1AO95602 1720 aaPredicted RBP-0.44□□□□□ -2.48
VPS13A-213ENST00000539950 CREBBPQ92793 2442 aa-0.44□□□□□ -2.48
VPS13A-213ENST00000539950 LCE6AA0A183 80 aa-0.44□□□□□ -2.48
VPS13A-213ENST00000539950 RABAC1Q9UI14 185 aa-0.44□□□□□ -2.48
VPS13A-213ENST00000539950 HTTP42858 3142 aa-0.44□□□□□ -2.48
VPS13A-213ENST00000539950 CCDC88BA6NC98 1476 aa-0.44□□□□□ -2.48
VPS13A-213ENST00000539950 TNRC6CQ9HCJ0 1690 aaKnown RBP-0.44□□□□□ -2.48
VPS13A-213ENST00000539950 SUPT6HQ7KZ85 1726 aaKnown RBP-0.44□□□□□ -2.48
VPS13A-213ENST00000539950 MYH4Q9Y623 1939 aa-0.44□□□□□ -2.48
VPS13A-213ENST00000539950 KNL1Q8NG31 2342 aa-0.44□□□□□ -2.48
VPS13A-213ENST00000539950 NWD1Q149M9 1564 aa-0.45□□□□□ -2.48
VPS13A-213ENST00000539950 HECTD1Q9ULT8 2610 aa-0.45□□□□□ -2.48
VPS13A-213ENST00000539950 MYMXA0A1B0GTQ4 84 aa-0.45□□□□□ -2.48
VPS13A-213ENST00000539950 IQCF6A8MYZ5 107 aa-0.45□□□□□ -2.48
VPS13A-213ENST00000539950 NDUFA3O95167 84 aa-0.45□□□□□ -2.48
VPS13A-213ENST00000539950 RPL38P63173 70 aaKnown RBP-0.45□□□□□ -2.48
VPS13A-213ENST00000539950 PEA15Q15121 130 aa-0.45□□□□□ -2.48
VPS13A-213ENST00000539950 GAFA1Q96PS6 74 aa-0.45□□□□□ -2.48
VPS13A-213ENST00000539950 C4AP0C0L4 1744 aa-0.45□□□□□ -2.48
VPS13A-213ENST00000539950 C4BP0C0L5 1744 aa-0.45□□□□□ -2.48
VPS13A-213ENST00000539950 TEP1Q99973 2627 aaKnown RBP-0.45□□□□□ -2.48
VPS13A-213ENST00000539950 PRRC2CQ9Y520 2896 aaKnown RBP-0.45□□□□□ -2.48
VPS13A-213ENST00000539950 DIP2BQ9P265 1576 aa-0.45□□□□□ -2.48
VPS13A-213ENST00000539950 USH2AO75445 5202 aa-0.45□□□□□ -2.48
VPS13A-213ENST00000539950 NESP48681 1621 aa-0.46□□□□□ -2.48
VPS13A-213ENST00000539950 MAP3K4Q9Y6R4 1608 aa-0.46□□□□□ -2.48
VPS13A-213ENST00000539950 FAT1Q14517 4588 aa-0.46□□□□□ -2.48
VPS13A-213ENST00000539950 TRAV21A0A0B4J279 112 aa-0.46□□□□□ -2.48
VPS13A-213ENST00000539950 H0YGG7 62 aa-0.46□□□□□ -2.48
VPS13A-213ENST00000539950 CYB5AP00167 134 aa-0.46□□□□□ -2.48
VPS13A-213ENST00000539950 C3orf79P0CE67 100 aa-0.46□□□□□ -2.48
VPS13A-213ENST00000539950 MT4P47944 62 aa-0.46□□□□□ -2.48
VPS13A-213ENST00000539950 SNRPFP62306 86 aaKnown RBP-0.46□□□□□ -2.48
VPS13A-213ENST00000539950 LINC00643Q86TS7 51 aa-0.46□□□□□ -2.48
VPS13A-213ENST00000539950 EPG5Q9HCE0 2579 aa-0.46□□□□□ -2.48
VPS13A-213ENST00000539950 UBR3Q6ZT12 1888 aa-0.46□□□□□ -2.48
VPS13A-213ENST00000539950 DEPDC5O75140 1603 aa-0.46□□□□□ -2.48
VPS13A-213ENST00000539950 ZNF831Q5JPB2 1677 aa-0.46□□□□□ -2.48
VPS13A-213ENST00000539950 TACC2O95359 2948 aa-0.47□□□□□ -2.48
VPS13A-213ENST00000539950 NBASA2RRP1 2371 aa-0.47□□□□□ -2.48
VPS13A-213ENST00000539950 URB2Q14146 1524 aaKnown RBP-0.47□□□□□ -2.48
VPS13A-213ENST00000539950 PVALEFA0A1B0GWK0 134 aa-0.47□□□□□ -2.48
VPS13A-213ENST00000539950 C9orf92A6NGG3 77 aa-0.47□□□□□ -2.48
VPS13A-213ENST00000539950 K7EP34 96 aa-0.47□□□□□ -2.48
VPS13A-213ENST00000539950 NDUFB1O75438 58 aa-0.47□□□□□ -2.48
VPS13A-213ENST00000539950 KRTAP20-2Q3LI61 65 aa-0.47□□□□□ -2.48
VPS13A-213ENST00000539950 V9GYS6 101 aa-0.47□□□□□ -2.48
VPS13A-213ENST00000539950 DOT1LQ8TEK3 1739 aa-0.47□□□□□ -2.49
VPS13A-213ENST00000539950 ZZEF1O43149 2961 aa-0.48□□□□□ -2.49
VPS13A-213ENST00000539950 DNAH6Q9C0G6 4158 aa-0.48□□□□□ -2.49
VPS13A-213ENST00000539950 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP-0.48□□□□□ -2.49
VPS13A-213ENST00000539950 STARD9Q9P2P6 4700 aa-0.48□□□□□ -2.49
VPS13A-213ENST00000539950 KIF14Q15058 1648 aa-0.48□□□□□ -2.49
VPS13A-213ENST00000539950 LYNX1G3V0Z9 82 aa-0.48□□□□□ -2.49
VPS13A-213ENST00000539950 ACYP1P07311 99 aa-0.48□□□□□ -2.49
VPS13A-213ENST00000539950 LTN1O94822 1766 aa-0.48□□□□□ -2.49
VPS13A-213ENST00000539950 RGPD4Q7Z3J3 1758 aa-0.48□□□□□ -2.49
VPS13A-213ENST00000539950 CUBNO60494 3623 aa-0.48□□□□□ -2.49
VPS13A-213ENST00000539950 HIVEP1P15822 2718 aa-0.48□□□□□ -2.49
VPS13A-213ENST00000539950 NCOA2Q15596 1464 aa-0.48□□□□□ -2.49
VPS13A-213ENST00000539950 MAP3K1Q13233 1512 aa-0.48□□□□□ -2.49
VPS13A-213ENST00000539950 LAMA1P25391 3075 aa-0.49□□□□□ -2.49
VPS13A-213ENST00000539950 RGPD3A6NKT7 1758 aaPredicted RBP-0.49□□□□□ -2.49
VPS13A-213ENST00000539950 PPLO60437 1756 aa-0.49□□□□□ -2.49
VPS13A-213ENST00000539950 CEBPZOSA8MTT3 80 aa-0.49□□□□□ -2.49
VPS13A-213ENST00000539950 H0YAA0 97 aa-0.49□□□□□ -2.49
VPS13A-213ENST00000539950 S100A16Q96FQ6 103 aaKnown RBP-0.49□□□□□ -2.49
VPS13A-213ENST00000539950 PRO3102Q9H379 93 aa-0.49□□□□□ -2.49
Retrieved 100 of 20,778 RNA–protein pairs in 72.7 ms