RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 IGLV6-57P01721 117 aa8.32□□□□□ -1.08
SFSWAP-208ENST00000539506 MPLKIPQ8TAP9 179 aa8.32□□□□□ -1.08
SFSWAP-208ENST00000539506 PRB2P02812 416 aaPredicted RBP8.31□□□□□ -1.08
SFSWAP-208ENST00000539506 COX7BP24311 80 aa8.31□□□□□ -1.08
SFSWAP-208ENST00000539506 GVQW2A0A096LPI5 108 aaPredicted RBP8.3□□□□□ -1.08
SFSWAP-208ENST00000539506 LRCOL1A6NCL2 159 aa8.3□□□□□ -1.08
SFSWAP-208ENST00000539506 CAMK2N2Q96S95 79 aa8.3□□□□□ -1.08
SFSWAP-208ENST00000539506 CSMD3Q7Z407 3707 aa8.3□□□□□ -1.08
SFSWAP-208ENST00000539506 LOC110117498A0A087WWA1 95 aa8.29□□□□□ -1.08
SFSWAP-208ENST00000539506 ESRGQ1W209 222 aa8.29□□□□□ -1.08
SFSWAP-208ENST00000539506 MAST4O15021 2626 aa8.29□□□□□ -1.08
SFSWAP-208ENST00000539506 FLNBO75369 2602 aaKnown RBP8.28□□□□□ -1.08
SFSWAP-208ENST00000539506 FP248Q71RG6 208 aaPredicted RBP8.28□□□□□ -1.08
SFSWAP-208ENST00000539506 NREPQ16612 68 aa8.27□□□□□ -1.08
SFSWAP-208ENST00000539506 Q6ZRU5 148 aa8.27□□□□□ -1.08
SFSWAP-208ENST00000539506 C15orf56Q8N910 161 aa8.27□□□□□ -1.08
SFSWAP-208ENST00000539506 A0A0U1RQV1 116 aa8.27□□□□□ -1.09
SFSWAP-208ENST00000539506 FAM229BQ4G0N7 80 aa8.27□□□□□ -1.09
SFSWAP-208ENST00000539506 NOTCH1P46531 2555 aa8.27□□□□□ -1.09
SFSWAP-208ENST00000539506 SERP1Q9Y6X1 66 aa8.26□□□□□ -1.09
SFSWAP-208ENST00000539506 DNAH1Q9P2D7 4330 aa8.26□□□□□ -1.09
SFSWAP-208ENST00000539506 TRBV7-6A0A0J9YX20 115 aa8.26□□□□□ -1.09
SFSWAP-208ENST00000539506 KRTAP24-1Q3LI83 254 aa8.26□□□□□ -1.09
SFSWAP-208ENST00000539506 H3BNG1 76 aa8.25□□□□□ -1.09
SFSWAP-208ENST00000539506 A0A0G2JQZ4 141 aa8.25□□□□□ -1.09
SFSWAP-208ENST00000539506 A0A1W2PNN7 141 aa8.25□□□□□ -1.09
SFSWAP-208ENST00000539506 RPL37AP8A6NKH3 93 aa8.25□□□□□ -1.09
SFSWAP-208ENST00000539506 EGFEM1PQ0D2K5 195 aa8.25□□□□□ -1.09
SFSWAP-208ENST00000539506 HIGD2AQ9BW72 106 aa8.25□□□□□ -1.09
SFSWAP-208ENST00000539506 NDUFC2-KCTD14E9PQ53 114 aa8.24□□□□□ -1.09
SFSWAP-208ENST00000539506 VPREB1P12018 145 aa8.24□□□□□ -1.09
SFSWAP-208ENST00000539506 KLKP1Q107X0 134 aa8.24□□□□□ -1.09
SFSWAP-208ENST00000539506 FAM30AQ9NZY2 134 aa8.24□□□□□ -1.09
SFSWAP-208ENST00000539506 TRBV7-4A0A0J9YYF1 115 aa8.24□□□□□ -1.09
SFSWAP-208ENST00000539506 C1orf195Q5TG92 126 aa8.24□□□□□ -1.09
SFSWAP-208ENST00000539506 TMEM254Q8TBM7 123 aa8.23□□□□□ -1.09
SFSWAP-208ENST00000539506 LYSTQ99698 3801 aa8.23□□□□□ -1.09
SFSWAP-208ENST00000539506 BRK1Q8WUW1 75 aa8.23□□□□□ -1.09
SFSWAP-208ENST00000539506 ELOF1P60002 83 aaKnown RBP8.22□□□□□ -1.09
SFSWAP-208ENST00000539506 CXCL6P80162 114 aa8.22□□□□□ -1.09
SFSWAP-208ENST00000539506 PRR4Q16378 134 aa8.22□□□□□ -1.09
SFSWAP-208ENST00000539506 Q6ZRP5 223 aa8.22□□□□□ -1.09
SFSWAP-208ENST00000539506 SRRM2Q9UQ35 2752 aaKnown RBP8.22□□□□□ -1.09
SFSWAP-208ENST00000539506 NBEAL1Q6ZS30 2694 aa8.21□□□□□ -1.09
SFSWAP-208ENST00000539506 HUWE1Q7Z6Z7 4374 aaKnown RBP8.21□□□□□ -1.1
SFSWAP-208ENST00000539506 IGKV2D-24A0A075B6R9 120 aa8.2□□□□□ -1.1
SFSWAP-208ENST00000539506 DEFB131BA0A096LNP1 70 aa8.2□□□□□ -1.1
SFSWAP-208ENST00000539506 COL6A5A8TX70 2615 aa8.2□□□□□ -1.1
SFSWAP-208ENST00000539506 IGKV4-1P06312 121 aa8.19□□□□□ -1.1
SFSWAP-208ENST00000539506 DEFB116Q30KQ4 102 aa8.19□□□□□ -1.1
SFSWAP-208ENST00000539506 LINC01556Q5JQF7 62 aa8.18□□□□□ -1.1
SFSWAP-208ENST00000539506 C11orf45Q8TAV5 145 aa8.18□□□□□ -1.1
SFSWAP-208ENST00000539506 FAM168BA1KXE4 195 aa8.18□□□□□ -1.1
SFSWAP-208ENST00000539506 SERTAD4-AS1Q5TG53 156 aa8.18□□□□□ -1.1
SFSWAP-208ENST00000539506 ST20-AS1Q8NBB2 130 aa8.18□□□□□ -1.1
SFSWAP-208ENST00000539506 PDE6GP18545 87 aa8.18□□□□□ -1.1
SFSWAP-208ENST00000539506 SMIM26A0A096LP01 95 aa8.17□□□□□ -1.1
SFSWAP-208ENST00000539506 LINC00528Q8N1L1 170 aa8.17□□□□□ -1.1
SFSWAP-208ENST00000539506 SMIM29Q86T20 159 aa8.17□□□□□ -1.1
SFSWAP-208ENST00000539506 M0R378 163 aa8.16□□□□□ -1.1
SFSWAP-208ENST00000539506 DNAH10Q8IVF4 4471 aa8.16□□□□□ -1.1
SFSWAP-208ENST00000539506 CASC10Q5T4H9 136 aa8.16□□□□□ -1.1
SFSWAP-208ENST00000539506 Q8N377 158 aa8.15□□□□□ -1.11
SFSWAP-208ENST00000539506 EPM2AB3EWF7 344 aa8.14□□□□□ -1.11
SFSWAP-208ENST00000539506 NKAPP1Q8N9T2 125 aa8.14□□□□□ -1.11
SFSWAP-208ENST00000539506 PRYO14603 147 aa8.13□□□□□ -1.11
SFSWAP-208ENST00000539506 SYCNQ0VAF6 134 aa8.13□□□□□ -1.11
SFSWAP-208ENST00000539506 DNAH10OSP0CZ25 163 aa8.13□□□□□ -1.11
SFSWAP-208ENST00000539506 FUSP35637 526 aaKnown RBP eCLIP8.13□□□□□ -1.11
SFSWAP-208ENST00000539506 C7orf33Q8WU49 177 aa8.12□□□□□ -1.11
SFSWAP-208ENST00000539506 OCR1Q9BZK8 76 aa8.12□□□□□ -1.11
SFSWAP-208ENST00000539506 LINC00588Q9Y4M8 146 aa8.12□□□□□ -1.11
SFSWAP-208ENST00000539506 COL7A1Q02388 2944 aa8.12□□□□□ -1.11
SFSWAP-208ENST00000539506 DNAH9Q9NYC9 4486 aa8.1□□□□□ -1.11
SFSWAP-208ENST00000539506 A0A1W2PNM2 257 aa8.09□□□□□ -1.11
SFSWAP-208ENST00000539506 ERC2-IT1O76042 136 aa8.09□□□□□ -1.11
SFSWAP-208ENST00000539506 KRTAP7-1Q8IUC3 87 aa8.09□□□□□ -1.11
SFSWAP-208ENST00000539506 BCE1O60756 84 aa8.09□□□□□ -1.11
SFSWAP-208ENST00000539506 KCNQ1DNQ9H478 68 aa8.08□□□□□ -1.12
SFSWAP-208ENST00000539506 Q9BRP9 147 aa8.07□□□□□ -1.12
SFSWAP-208ENST00000539506 K7EQZ3 153 aa8.07□□□□□ -1.12
SFSWAP-208ENST00000539506 C1orf137Q5JT78 98 aa8.07□□□□□ -1.12
SFSWAP-208ENST00000539506 H3BQ85 93 aa8.07□□□□□ -1.12
SFSWAP-208ENST00000539506 NDUFC1O43677 76 aa8.06□□□□□ -1.12
SFSWAP-208ENST00000539506 DNAH7Q8WXX0 4024 aa8.06□□□□□ -1.12
SFSWAP-208ENST00000539506 PSPHP1O15172 72 aa8.06□□□□□ -1.12
SFSWAP-208ENST00000539506 UBE2BP63146 152 aa8.06□□□□□ -1.12
SFSWAP-208ENST00000539506 ETDCA0A1B0GVM5 59 aa8.05□□□□□ -1.12
SFSWAP-208ENST00000539506 WFDC13Q8IUB5 93 aa8.05□□□□□ -1.12
SFSWAP-208ENST00000539506 K7EIL1 84 aa8.04□□□□□ -1.12
SFSWAP-208ENST00000539506 TLX1NBP0CAT3 122 aa8.04□□□□□ -1.12
SFSWAP-208ENST00000539506 KRTAP4-16G5E9R7 235 aaPredicted RBP8.03□□□□□ -1.12
SFSWAP-208ENST00000539506 MGAM2Q2M2H8 2515 aa8.03□□□□□ -1.12
SFSWAP-208ENST00000539506 RPL37AP61513 92 aaKnown RBP8.03□□□□□ -1.12
SFSWAP-208ENST00000539506 TENM2Q9NT68 2774 aa8.02□□□□□ -1.13
SFSWAP-208ENST00000539506 STAB2Q8WWQ8 2551 aa8.02□□□□□ -1.13
SFSWAP-208ENST00000539506 IGLV1-50A0A075B6I6 118 aa8.01□□□□□ -1.13
SFSWAP-208ENST00000539506 DSCR10P59022 87 aa8.01□□□□□ -1.13
SFSWAP-208ENST00000539506 A0A096LNI7 61 aa8□□□□□ -1.13
SFSWAP-208ENST00000539506 C1orf64Q8NEQ6 169 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms