RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 REG3GQ6UW15 175 aa9.48□□□□□ -0.89
RPAIN-206ENST00000539417 TIMM17BO60830 172 aa9.47□□□□□ -0.89
RPAIN-206ENST00000539417 KRTAP10-8P60410 259 aa9.47□□□□□ -0.89
RPAIN-206ENST00000539417 PRLHP81277 87 aa9.47□□□□□ -0.89
RPAIN-206ENST00000539417 TRBV10-3A0A0K0K1G6 114 aa9.46□□□□□ -0.9
RPAIN-206ENST00000539417 A6NDN8 102 aa9.46□□□□□ -0.9
RPAIN-206ENST00000539417 LINC00308Q8TCZ7 52 aa9.46□□□□□ -0.9
RPAIN-206ENST00000539417 KRTAP3-3Q9BYR6 98 aa9.46□□□□□ -0.9
RPAIN-206ENST00000539417 KRTAP3-2Q9BYR7 98 aa9.46□□□□□ -0.9
RPAIN-206ENST00000539417 TAL2Q16559 108 aa9.45□□□□□ -0.9
RPAIN-206ENST00000539417 FAM19A1Q7Z5A9 133 aa9.45□□□□□ -0.9
RPAIN-206ENST00000539417 RPL28P46779 137 aaKnown RBP9.44□□□□□ -0.9
RPAIN-206ENST00000539417 UBE2AP49459 152 aa9.44□□□□□ -0.9
RPAIN-206ENST00000539417 HMCN2Q8NDA2 5059 aa9.44□□□□□ -0.9
RPAIN-206ENST00000539417 NDUFC2O95298 119 aa9.43□□□□□ -0.9
RPAIN-206ENST00000539417 PRR26Q8N8Z3 221 aa9.43□□□□□ -0.9
RPAIN-206ENST00000539417 SCGB1D4Q6XE38 83 aa9.42□□□□□ -0.9
RPAIN-206ENST00000539417 KCNQ1DNQ9H478 68 aa9.42□□□□□ -0.9
RPAIN-206ENST00000539417 SPANXB1Q9NS25 103 aaPredicted RBP9.42□□□□□ -0.9
RPAIN-206ENST00000539417 TRBV10-2A0A0K0K1G8 114 aa9.41□□□□□ -0.9
RPAIN-206ENST00000539417 SPRR1AP35321 89 aa9.41□□□□□ -0.9
RPAIN-206ENST00000539417 SPANXDQ9BXN6 97 aa9.41□□□□□ -0.9
RPAIN-206ENST00000539417 SPANXCQ9NY87 97 aa9.41□□□□□ -0.9
RPAIN-206ENST00000539417 KRTAP4-16G5E9R7 235 aaPredicted RBP9.4□□□□□ -0.9
RPAIN-206ENST00000539417 PRYO14603 147 aa9.4□□□□□ -0.9
RPAIN-206ENST00000539417 ANAPC11Q9NYG5 84 aa9.4□□□□□ -0.9
RPAIN-206ENST00000539417 TAX1BP3O14907 124 aa9.4□□□□□ -0.91
RPAIN-206ENST00000539417 IGLV6-57P01721 117 aa9.4□□□□□ -0.91
RPAIN-206ENST00000539417 CEND1Q8N111 149 aa9.39□□□□□ -0.91
RPAIN-206ENST00000539417 HIST1H4GQ99525 98 aa9.38□□□□□ -0.91
RPAIN-206ENST00000539417 MUSTN1Q8IVN3 82 aa9.37□□□□□ -0.91
RPAIN-206ENST00000539417 A0A087X002 238 aa9.36□□□□□ -0.91
RPAIN-206ENST00000539417 S100A7L2Q5SY68 101 aa9.36□□□□□ -0.91
RPAIN-206ENST00000539417 LINC00337Q8N6G1 96 aa9.36□□□□□ -0.91
RPAIN-206ENST00000539417 HIGD2AQ9BW72 106 aa9.36□□□□□ -0.91
RPAIN-206ENST00000539417 B5MCH6 92 aa9.34□□□□□ -0.91
RPAIN-206ENST00000539417 TRAV23DV6A0A075B6W5 121 aa9.34□□□□□ -0.91
RPAIN-206ENST00000539417 ETDCA0A1B0GVM5 59 aa9.34□□□□□ -0.91
RPAIN-206ENST00000539417 C9orf118A6NHY6 69 aa9.34□□□□□ -0.91
RPAIN-206ENST00000539417 FXYD2P54710 66 aa9.34□□□□□ -0.91
RPAIN-206ENST00000539417 VAMP3Q15836 100 aa9.34□□□□□ -0.91
RPAIN-206ENST00000539417 SMCR5Q8TEV8 140 aa9.34□□□□□ -0.91
RPAIN-206ENST00000539417 TMEM238LA0A1B0GVL6 79 aa9.33□□□□□ -0.92
RPAIN-206ENST00000539417 A6NJY4 79 aa9.33□□□□□ -0.92
RPAIN-206ENST00000539417 UBE2V1Q13404 147 aa9.33□□□□□ -0.92
RPAIN-206ENST00000539417 Q6ZVH6 145 aa9.33□□□□□ -0.92
RPAIN-206ENST00000539417 OR13C6PQ8NH95 151 aa9.33□□□□□ -0.92
RPAIN-206ENST00000539417 ERC2-IT1O76042 136 aa9.32□□□□□ -0.92
RPAIN-206ENST00000539417 IFITM1P13164 125 aa9.32□□□□□ -0.92
RPAIN-206ENST00000539417 KRTAP13-2Q52LG2 175 aa9.32□□□□□ -0.92
RPAIN-206ENST00000539417 Q9BRP9 147 aa9.32□□□□□ -0.92
RPAIN-206ENST00000539417 ZNF73O43830 326 aaPredicted RBP9.3□□□□□ -0.92
RPAIN-206ENST00000539417 NHP2Q9NX24 153 aaKnown RBP9.3□□□□□ -0.92
RPAIN-206ENST00000539417 PPDPFQ9H3Y8 114 aa9.29□□□□□ -0.92
RPAIN-206ENST00000539417 A0A1B0GWB2 263 aa9.28□□□□□ -0.92
RPAIN-206ENST00000539417 Q6ZRX8 168 aa9.28□□□□□ -0.92
RPAIN-206ENST00000539417 SPRR4Q96PI1 79 aa9.28□□□□□ -0.92
RPAIN-206ENST00000539417 H3BUT2 72 aa9.28□□□□□ -0.92
RPAIN-206ENST00000539417 GTF2H5Q6ZYL4 71 aa9.28□□□□□ -0.92
RPAIN-206ENST00000539417 RAB37Q96AX2 223 aa9.28□□□□□ -0.92
RPAIN-206ENST00000539417 CRYGAP11844 174 aa9.27□□□□□ -0.93
RPAIN-206ENST00000539417 A0A1W2PPM0 123 aa9.26□□□□□ -0.93
RPAIN-206ENST00000539417 FABP2P12104 132 aa9.25□□□□□ -0.93
RPAIN-206ENST00000539417 RPL13AP40429 203 aaKnown RBP9.25□□□□□ -0.93
RPAIN-206ENST00000539417 FAM229BQ4G0N7 80 aa9.25□□□□□ -0.93
RPAIN-206ENST00000539417 C3orf22Q8N5N4 141 aa9.25□□□□□ -0.93
RPAIN-206ENST00000539417 COPS9Q8WXC6 57 aa9.25□□□□□ -0.93
RPAIN-206ENST00000539417 A4D1N5 150 aa9.24□□□□□ -0.93
RPAIN-206ENST00000539417 K7ERJ3 54 aa9.24□□□□□ -0.93
RPAIN-206ENST00000539417 C6orf99Q4VX62 202 aa9.24□□□□□ -0.93
RPAIN-206ENST00000539417 TYMSOSQ8TAI1 123 aa9.23□□□□□ -0.93
RPAIN-206ENST00000539417 K7EP34 96 aa9.22□□□□□ -0.93
RPAIN-206ENST00000539417 ST20-AS1Q8NBB2 130 aa9.22□□□□□ -0.93
RPAIN-206ENST00000539417 GAGE2AQ6NT46 116 aa9.21□□□□□ -0.94
RPAIN-206ENST00000539417 SPCS1Q9Y6A9 102 aa9.21□□□□□ -0.94
RPAIN-206ENST00000539417 ELOF1P60002 83 aaKnown RBP9.2□□□□□ -0.94
RPAIN-206ENST00000539417 SMIM11BQ8TCY0 68 aa9.2□□□□□ -0.94
RPAIN-206ENST00000539417 NAA38Q9BRA0 125 aaKnown RBP9.2□□□□□ -0.94
RPAIN-206ENST00000539417 COX7BP24311 80 aa9.19□□□□□ -0.94
RPAIN-206ENST00000539417 LINC00483Q53H64 154 aa9.19□□□□□ -0.94
RPAIN-206ENST00000539417 CBY1Q9Y3M2 126 aa9.19□□□□□ -0.94
RPAIN-206ENST00000539417 ZNF706Q9Y5V0 76 aaPredicted RBP9.19□□□□□ -0.94
RPAIN-206ENST00000539417 TRAV13-2A0A0B4J235 113 aa9.18□□□□□ -0.94
RPAIN-206ENST00000539417 A0A0B4J2C4 111 aa9.17□□□□□ -0.94
RPAIN-206ENST00000539417 TSPAN13O95857 204 aa9.17□□□□□ -0.94
RPAIN-206ENST00000539417 LYRM7Q5U5X0 104 aa9.17□□□□□ -0.94
RPAIN-206ENST00000539417 LRP2P98164 4655 aa9.17□□□□□ -0.94
RPAIN-206ENST00000539417 LPAP08519 4548 aa9.16□□□□□ -0.94
RPAIN-206ENST00000539417 CFC1BP0CG36 223 aa9.16□□□□□ -0.94
RPAIN-206ENST00000539417 CFC1P0CG37 223 aa9.16□□□□□ -0.94
RPAIN-206ENST00000539417 PRO1854Q9UHT4 67 aa9.16□□□□□ -0.94
RPAIN-206ENST00000539417 UBR4Q5T4S7 5183 aa9.16□□□□□ -0.94
RPAIN-206ENST00000539417 TRBV7-6A0A0J9YX20 115 aa9.13□□□□□ -0.95
RPAIN-206ENST00000539417 DHRS4-AS1Q9P1J3 65 aa9.13□□□□□ -0.95
RPAIN-206ENST00000539417 IGLV9-49A0A0B4J1Y8 123 aa9.12□□□□□ -0.95
RPAIN-206ENST00000539417 LINC00304Q8N9R0 145 aa9.12□□□□□ -0.95
RPAIN-206ENST00000539417 MOBPQ13875 183 aa9.1□□□□□ -0.95
RPAIN-206ENST00000539417 Q8NBF4 154 aa9.1□□□□□ -0.95
RPAIN-206ENST00000539417 TRBV20-1A0A075B6N2 111 aa9.09□□□□□ -0.95
RPAIN-206ENST00000539417 F8W1H4 67 aa9.08□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms