RNA–Protein interactions for RNA: ENST00000538475.5

USP28-207, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 1,081 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-207ENST00000538475 IGLV5-37A0A075B6J1 123 aa4.36□□□□□ -1.71
USP28-207ENST00000538475 RPL37AP8A6NKH3 93 aa4.36□□□□□ -1.71
USP28-207ENST00000538475 DEFB130BP0DP73 79 aa4.36□□□□□ -1.71
USP28-207ENST00000538475 DEFB130AP0DP74 79 aa4.36□□□□□ -1.71
USP28-207ENST00000538475 DSCR10P59022 87 aa4.36□□□□□ -1.71
USP28-207ENST00000538475 C1orf137Q5JT78 98 aa4.36□□□□□ -1.71
USP28-207ENST00000538475 CLPSL2Q6UWE3 100 aa4.36□□□□□ -1.71
USP28-207ENST00000538475 CDC42SE1Q9NRR8 79 aa4.36□□□□□ -1.71
USP28-207ENST00000538475 SMG1Q96Q15 3661 aaKnown RBP4.35□□□□□ -1.71
USP28-207ENST00000538475 TLN2Q9Y4G6 2542 aa4.35□□□□□ -1.71
USP28-207ENST00000538475 A0A1W2PNM2 257 aa4.35□□□□□ -1.71
USP28-207ENST00000538475 C3orf84H3BNL1 204 aa4.35□□□□□ -1.71
USP28-207ENST00000538475 CHKB-CPT1BH3BT56 60 aa4.35□□□□□ -1.71
USP28-207ENST00000538475 CAMK2N2Q96S95 79 aa4.35□□□□□ -1.71
USP28-207ENST00000538475 RETNQ9HD89 108 aa4.35□□□□□ -1.71
USP28-207ENST00000538475 RBM12B-AS1Q9P1G2 102 aa4.35□□□□□ -1.71
USP28-207ENST00000538475 NCOR2Q9Y618 2525 aa4.34□□□□□ -1.71
USP28-207ENST00000538475 BOD1L1Q8NFC6 3051 aa4.34□□□□□ -1.71
USP28-207ENST00000538475 DMDP11532 3685 aa4.34□□□□□ -1.71
USP28-207ENST00000538475 IGLV10-54A0A075B6I4 117 aa4.34□□□□□ -1.71
USP28-207ENST00000538475 A6NN06 94 aa4.34□□□□□ -1.71
USP28-207ENST00000538475 C16orf90A8MZG2 172 aa4.34□□□□□ -1.71
USP28-207ENST00000538475 H3BNG1 76 aa4.34□□□□□ -1.71
USP28-207ENST00000538475 TLX1NBP0CAT3 122 aa4.34□□□□□ -1.71
USP28-207ENST00000538475 SPRR1AP35321 89 aa4.34□□□□□ -1.71
USP28-207ENST00000538475 ASB16-AS1Q495Z4 193 aa4.34□□□□□ -1.71
USP28-207ENST00000538475 Q6ZRX8 168 aa4.34□□□□□ -1.71
USP28-207ENST00000538475 C7orf65Q6ZTY9 151 aa4.34□□□□□ -1.71
USP28-207ENST00000538475 MYO9AB2RTY4 2548 aa4.33□□□□□ -1.72
USP28-207ENST00000538475 IGLV8-61A0A075B6I0 122 aa4.33□□□□□ -1.72
USP28-207ENST00000538475 NKAPP1Q8N9T2 125 aa4.33□□□□□ -1.72
USP28-207ENST00000538475 XAGE1AQ9HD64 81 aa4.33□□□□□ -1.72
USP28-207ENST00000538475 MAP1AP78559 2803 aaPredicted RBP4.33□□□□□ -1.72
USP28-207ENST00000538475 LINC01558Q9Y6Z2 57 aa4.32□□□□□ -1.72
USP28-207ENST00000538475 ANKRD17O75179 2603 aaKnown RBP4.32□□□□□ -1.72
USP28-207ENST00000538475 PTPN13Q12923 2485 aa4.32□□□□□ -1.72
USP28-207ENST00000538475 IGLV7-46A0A075B6I9 117 aa4.31□□□□□ -1.72
USP28-207ENST00000538475 IGKV2D-24A0A075B6R9 120 aa4.31□□□□□ -1.72
USP28-207ENST00000538475 LRCOL1A6NCL2 159 aa4.31□□□□□ -1.72
USP28-207ENST00000538475 KRTAP29-1A8MX34 341 aaPredicted RBP4.31□□□□□ -1.72
USP28-207ENST00000538475 KRTAP4-16G5E9R7 235 aaPredicted RBP4.31□□□□□ -1.72
USP28-207ENST00000538475 K7EQZ3 153 aa4.31□□□□□ -1.72
USP28-207ENST00000538475 APOC4P55056 127 aa4.31□□□□□ -1.72
USP28-207ENST00000538475 LCA10Q71F78 164 aa4.31□□□□□ -1.72
USP28-207ENST00000538475 C9orf163Q8N9P6 203 aa4.31□□□□□ -1.72
USP28-207ENST00000538475 WFDC10AQ9H1F0 79 aa4.31□□□□□ -1.72
USP28-207ENST00000538475 SPENQ96T58 3664 aaKnown RBP4.31□□□□□ -1.72
USP28-207ENST00000538475 BSNQ9UPA5 3926 aa4.31□□□□□ -1.72
USP28-207ENST00000538475 CSMD1Q96PZ7 3565 aa4.3□□□□□ -1.72
USP28-207ENST00000538475 KRTAP26-1Q6PEX3 210 aa4.3□□□□□ -1.72
USP28-207ENST00000538475 ST20-AS1Q8NBB2 130 aa4.3□□□□□ -1.72
USP28-207ENST00000538475 PRR15LQ9BU68 103 aa4.3□□□□□ -1.72
USP28-207ENST00000538475 PLAC8Q9NZF1 115 aa4.3□□□□□ -1.72
USP28-207ENST00000538475 ZFHX4Q86UP3 3567 aa4.29□□□□□ -1.72
USP28-207ENST00000538475 A6NED7 52 aa4.29□□□□□ -1.72
USP28-207ENST00000538475 H0Y9P7 68 aa4.29□□□□□ -1.72
USP28-207ENST00000538475 SPART-AS1P0CW21 52 aa4.29□□□□□ -1.72
USP28-207ENST00000538475 CNBPP62633 177 aaKnown RBP4.29□□□□□ -1.72
USP28-207ENST00000538475 C7orf33Q8WU49 177 aa4.29□□□□□ -1.72
USP28-207ENST00000538475 TP53AIP1Q9HCN2 124 aa4.29□□□□□ -1.72
USP28-207ENST00000538475 IGLV1-50A0A075B6I6 118 aa4.28□□□□□ -1.72
USP28-207ENST00000538475 TTC28Q96AY4 2481 aa4.28□□□□□ -1.72
USP28-207ENST00000538475 ATMQ13315 3056 aa4.27□□□□□ -1.73
USP28-207ENST00000538475 A0A096LPF7 62 aa4.27□□□□□ -1.73
USP28-207ENST00000538475 C15orf56Q8N910 161 aa4.27□□□□□ -1.73
USP28-207ENST00000538475 DEFB105AQ8NG35 78 aa4.27□□□□□ -1.73
USP28-207ENST00000538475 JMJD1CQ15652 2540 aa4.27□□□□□ -1.73
USP28-207ENST00000538475 DOPEY1Q5JWR5 2465 aa4.27□□□□□ -1.73
USP28-207ENST00000538475 CHD6Q8TD26 2715 aa4.26□□□□□ -1.73
USP28-207ENST00000538475 DMXL1Q9Y485 3027 aa4.26□□□□□ -1.73
USP28-207ENST00000538475 CASC2Q6XLA1 102 aa4.26□□□□□ -1.73
USP28-207ENST00000538475 COA5Q86WW8 74 aa4.26□□□□□ -1.73
USP28-207ENST00000538475 SPTSSBQ8NFR3 76 aa4.26□□□□□ -1.73
USP28-207ENST00000538475 ZFHX3Q15911 3703 aa4.25□□□□□ -1.73
USP28-207ENST00000538475 A8MWP4 228 aa4.25□□□□□ -1.73
USP28-207ENST00000538475 FN1P02751 2386 aaKnown RBP4.25□□□□□ -1.73
USP28-207ENST00000538475 USP9YO00507 2555 aaPredicted RBP4.24□□□□□ -1.73
USP28-207ENST00000538475 USP9XQ93008 2570 aaPredicted RBP4.24□□□□□ -1.73
USP28-207ENST00000538475 ITPR1Q14643 2758 aa4.24□□□□□ -1.73
USP28-207ENST00000538475 Q8NAQ8 132 aa4.24□□□□□ -1.73
USP28-207ENST00000538475 SETXQ7Z333 2677 aaKnown RBP4.24□□□□□ -1.73
USP28-207ENST00000538475 DEFB131BA0A096LNP1 70 aa4.23□□□□□ -1.73
USP28-207ENST00000538475 PRR4Q16378 134 aa4.23□□□□□ -1.73
USP28-207ENST00000538475 DEFB113Q30KQ7 82 aa4.23□□□□□ -1.73
USP28-207ENST00000538475 LINC01556Q5JQF7 62 aa4.23□□□□□ -1.73
USP28-207ENST00000538475 ZFHX2Q9C0A1 2572 aaPredicted RBP4.22□□□□□ -1.73
USP28-207ENST00000538475 SPRR1BP22528 89 aa4.22□□□□□ -1.73
USP28-207ENST00000538475 MOBPQ13875 183 aa4.22□□□□□ -1.73
USP28-207ENST00000538475 IGFL1Q6UW32 110 aa4.22□□□□□ -1.73
USP28-207ENST00000538475 WFDC13Q8IUB5 93 aa4.22□□□□□ -1.73
USP28-207ENST00000538475 APCP25054 2843 aa4.22□□□□□ -1.73
USP28-207ENST00000538475 MUC6Q6W4X9 2439 aa4.22□□□□□ -1.73
USP28-207ENST00000538475 CELSR1Q9NYQ6 3014 aa4.21□□□□□ -1.73
USP28-207ENST00000538475 ASH1LQ9NR48 2969 aaKnown RBP4.21□□□□□ -1.74
USP28-207ENST00000538475 H0Y9J4 135 aa4.21□□□□□ -1.74
USP28-207ENST00000538475 PRB1P04280 392 aa4.21□□□□□ -1.74
USP28-207ENST00000538475 SERTAD4-AS1Q5TG53 156 aa4.21□□□□□ -1.74
USP28-207ENST00000538475 REG3GQ6UW15 175 aa4.21□□□□□ -1.74
USP28-207ENST00000538475 Q6ZR54 194 aa4.21□□□□□ -1.74
USP28-207ENST00000538475 LRRK2Q5S007 2527 aa4.21□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 7.7 ms