RNA–Protein interactions for RNA: ENST00000533961.1

RDX-215, Transcript of radixin, human

TSL 2

Gene RDX, Length 771 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RDX-215	ENST00000533961	CCL22	O00626	93 aa		0.31	□□□□□ -2.36
RDX-215	ENST00000533961	PRH1	P02810	166 aa		0.31	□□□□□ -2.36
RDX-215	ENST00000533961	GOLGA4	Q13439	2230 aa	Known RBP	0.31	□□□□□ -2.36
RDX-215	ENST00000533961	LMTK2	Q8IWU2	1503 aa		0.31	□□□□□ -2.36
RDX-215	ENST00000533961	PIEZO2	Q9H5I5	2752 aa		0.31	□□□□□ -2.36
RDX-215	ENST00000533961	SPTBN4	Q9H254	2564 aa		0.31	□□□□□ -2.36
RDX-215	ENST00000533961	DDX60L	Q5H9U9	1706 aa	Known RBP	0.3	□□□□□ -2.36
RDX-215	ENST00000533961	CSMD3	Q7Z407	3707 aa		0.3	□□□□□ -2.36
RDX-215	ENST00000533961		A0A087WWC5	75 aa		0.3	□□□□□ -2.36
RDX-215	ENST00000533961		I3L3M4	83 aa		0.3	□□□□□ -2.36
RDX-215	ENST00000533961	KRTAP2-3	P0C7H8	128 aa		0.3	□□□□□ -2.36
RDX-215	ENST00000533961	SPRR1A	P35321	89 aa		0.3	□□□□□ -2.36
RDX-215	ENST00000533961	NREP	Q16612	68 aa		0.3	□□□□□ -2.36
RDX-215	ENST00000533961	SPINK6	Q6UWN8	80 aa		0.3	□□□□□ -2.36
RDX-215	ENST00000533961	WFDC9	Q8NEX5	89 aa		0.3	□□□□□ -2.36
RDX-215	ENST00000533961	MRPL34	Q9BQ48	92 aa	Known RBP	0.3	□□□□□ -2.36
RDX-215	ENST00000533961	KRTAP2-4	Q9BYR9	128 aa		0.3	□□□□□ -2.36
RDX-215	ENST00000533961	KRTAP2-1	Q9BYU5	128 aa		0.3	□□□□□ -2.36
RDX-215	ENST00000533961	TIAM1	Q13009	1591 aa		0.3	□□□□□ -2.36
RDX-215	ENST00000533961	MADD	Q8WXG6	1647 aa		0.3	□□□□□ -2.36
RDX-215	ENST00000533961	NRAP	Q86VF7	1730 aa		0.3	□□□□□ -2.36
RDX-215	ENST00000533961	HFM1	A2PYH4	1435 aa		0.3	□□□□□ -2.36
RDX-215	ENST00000533961	DIP2A	Q14689	1571 aa		0.29	□□□□□ -2.36
RDX-215	ENST00000533961	SMR3A	Q99954	134 aa		0.29	□□□□□ -2.36
RDX-215	ENST00000533961	C2CD3	Q4AC94	2353 aa		0.29	□□□□□ -2.36
RDX-215	ENST00000533961	TJP1	Q07157	1748 aa		0.29	□□□□□ -2.36
RDX-215	ENST00000533961	BPTF	Q12830	3046 aa		0.29	□□□□□ -2.36
RDX-215	ENST00000533961	USF3	Q68DE3	2245 aa		0.29	□□□□□ -2.36
RDX-215	ENST00000533961	PTPRZ1	P23471	2315 aa	Predicted RBP	0.29	□□□□□ -2.36
RDX-215	ENST00000533961	CACNA1E	Q15878	2313 aa		0.29	□□□□□ -2.36
RDX-215	ENST00000533961	PLCE1	Q9P212	2302 aa		0.29	□□□□□ -2.36
RDX-215	ENST00000533961	KMT2C	Q8NEZ4	4911 aa	Known RBP	0.28	□□□□□ -2.36
RDX-215	ENST00000533961	VWF	P04275	2813 aa		0.28	□□□□□ -2.36
RDX-215	ENST00000533961	POLQ	O75417	2590 aa		0.28	□□□□□ -2.36
RDX-215	ENST00000533961	FAT4	Q6V0I7	4981 aa		0.28	□□□□□ -2.36
RDX-215	ENST00000533961	TNC	P24821	2201 aa		0.28	□□□□□ -2.36
RDX-215	ENST00000533961	DOPEY2	Q9Y3R5	2298 aa		0.28	□□□□□ -2.36
RDX-215	ENST00000533961	SPRR1B	P22528	89 aa		0.28	□□□□□ -2.36
RDX-215	ENST00000533961	ANKHD1	Q8IWZ3	2542 aa	Known RBP	0.28	□□□□□ -2.36
RDX-215	ENST00000533961	REV3L	O60673	3130 aa		0.28	□□□□□ -2.37
RDX-215	ENST00000533961	COL6A5	A8TX70	2615 aa		0.28	□□□□□ -2.37
RDX-215	ENST00000533961	PLXNC1	O60486	1568 aa		0.28	□□□□□ -2.37
RDX-215	ENST00000533961	MAST1	Q9Y2H9	1570 aa		0.28	□□□□□ -2.37
RDX-215	ENST00000533961	C3	P01024	1663 aa		0.27	□□□□□ -2.37
RDX-215	ENST00000533961	C4A	P0C0L4	1744 aa		0.27	□□□□□ -2.37
RDX-215	ENST00000533961	C4B	P0C0L5	1744 aa		0.27	□□□□□ -2.37
RDX-215	ENST00000533961	RYR2	Q92736	4967 aa		0.27	□□□□□ -2.37
RDX-215	ENST00000533961	NDUFA4	O00483	81 aa		0.27	□□□□□ -2.37
RDX-215	ENST00000533961	SPINK4	O60575	86 aa		0.27	□□□□□ -2.37
RDX-215	ENST00000533961	ATXN8	Q156A1	80 aa		0.27	□□□□□ -2.37
RDX-215	ENST00000533961	DEFB105A	Q8NG35	78 aa		0.27	□□□□□ -2.37
RDX-215	ENST00000533961	KCNQ1DN	Q9H478	68 aa		0.27	□□□□□ -2.37
RDX-215	ENST00000533961	PTPRQ	Q9UMZ3	2332 aa		0.27	□□□□□ -2.37
RDX-215	ENST00000533961	ABCC6	O95255	1503 aa		0.27	□□□□□ -2.37
RDX-215	ENST00000533961	ABCA12	Q86UK0	2595 aa		0.27	□□□□□ -2.37
RDX-215	ENST00000533961	DEPDC5	O75140	1603 aa		0.27	□□□□□ -2.37
RDX-215	ENST00000533961	ABCA6	Q8N139	1617 aa		0.27	□□□□□ -2.37
RDX-215	ENST00000533961	LY75	O60449	1722 aa		0.27	□□□□□ -2.37
RDX-215	ENST00000533961	BDP1	A6H8Y1	2624 aa		0.26	□□□□□ -2.37
RDX-215	ENST00000533961	ZNF292	O60281	2723 aa		0.26	□□□□□ -2.37
RDX-215	ENST00000533961	OTOG	Q6ZRI0	2925 aa		0.26	□□□□□ -2.37
RDX-215	ENST00000533961	RYR1	P21817	5038 aa		0.26	□□□□□ -2.37
RDX-215	ENST00000533961	DEFB131B	A0A096LNP1	70 aa		0.26	□□□□□ -2.37
RDX-215	ENST00000533961		H3BVH4	76 aa		0.26	□□□□□ -2.37
RDX-215	ENST00000533961	DEFB114	Q30KQ6	69 aa		0.26	□□□□□ -2.37
RDX-215	ENST00000533961	DEFB109B	Q30KR1	87 aa		0.26	□□□□□ -2.37
RDX-215	ENST00000533961	CDKN2A-AS1	Q9UH64	79 aa		0.26	□□□□□ -2.37
RDX-215	ENST00000533961	SPTBN2	O15020	2390 aa		0.26	□□□□□ -2.37
RDX-215	ENST00000533961	ALS2	Q96Q42	1657 aa		0.25	□□□□□ -2.37
RDX-215	ENST00000533961	PREX2	Q70Z35	1606 aa		0.25	□□□□□ -2.37
RDX-215	ENST00000533961	ABCA10	Q8WWZ4	1543 aa		0.25	□□□□□ -2.37
RDX-215	ENST00000533961	MRPL33	O75394	65 aa	Known RBP	0.25	□□□□□ -2.37
RDX-215	ENST00000533961	H1FX-AS1	Q4G0G2	97 aa		0.25	□□□□□ -2.37
RDX-215	ENST00000533961	S100Z	Q8WXG8	99 aa		0.25	□□□□□ -2.37
RDX-215	ENST00000533961	UBL5	Q9BZL1	73 aa		0.25	□□□□□ -2.37
RDX-215	ENST00000533961	HILPDA	Q9Y5L2	63 aa		0.25	□□□□□ -2.37
RDX-215	ENST00000533961	TENM4	Q6N022	2769 aa		0.25	□□□□□ -2.37
RDX-215	ENST00000533961	NCOR1	O75376	2440 aa		0.25	□□□□□ -2.37
RDX-215	ENST00000533961	RNF213	Q63HN8	5207 aa		0.25	□□□□□ -2.37
RDX-215	ENST00000533961	GLI2	P10070	1586 aa		0.24	□□□□□ -2.37
RDX-215	ENST00000533961	CNOT1	A5YKK6	2376 aa	Known RBP	0.24	□□□□□ -2.37
RDX-215	ENST00000533961	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	0.24	□□□□□ -2.37
RDX-215	ENST00000533961	SPINK1	P00995	79 aa		0.24	□□□□□ -2.37
RDX-215	ENST00000533961	C3orf79	P0CE67	100 aa		0.24	□□□□□ -2.37
RDX-215	ENST00000533961	ENHO	Q6UWT2	76 aa		0.24	□□□□□ -2.37
RDX-215	ENST00000533961	TPR	P12270	2363 aa	Known RBP	0.24	□□□□□ -2.37
RDX-215	ENST00000533961	KIF1A	Q12756	1690 aa		0.24	□□□□□ -2.37
RDX-215	ENST00000533961	F8	P00451	2351 aa		0.23	□□□□□ -2.37
RDX-215	ENST00000533961	LYNX1	G3V0Z9	82 aa		0.23	□□□□□ -2.37
RDX-215	ENST00000533961	NDUFA3	O95167	84 aa		0.23	□□□□□ -2.37
RDX-215	ENST00000533961	GNG13	Q9P2W3	67 aa		0.23	□□□□□ -2.37
RDX-215	ENST00000533961	APLN	Q9ULZ1	77 aa		0.23	□□□□□ -2.37
RDX-215	ENST00000533961		U3KQA8	63 aa		0.23	□□□□□ -2.37
RDX-215	ENST00000533961	TEP1	Q99973	2627 aa	Known RBP	0.22	□□□□□ -2.37
RDX-215	ENST00000533961	BSN	Q9UPA5	3926 aa		0.22	□□□□□ -2.37
RDX-215	ENST00000533961		H0YAA0	97 aa		0.22	□□□□□ -2.37
RDX-215	ENST00000533961	LELP1	Q5T871	98 aa		0.22	□□□□□ -2.37
RDX-215	ENST00000533961	WFDC13	Q8IUB5	93 aa		0.22	□□□□□ -2.37
RDX-215	ENST00000533961	PRO3102	Q9H379	93 aa		0.22	□□□□□ -2.37
RDX-215	ENST00000533961	KIAA0586	Q9BVV6	1533 aa		0.22	□□□□□ -2.37

Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms