RNA–Protein interactions for RNA: ENST00000529637.5

USP48-213, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 3,228 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-213ENST00000529637 NDUFC1O43677 76 aa9.44□□□□□ -0.9
USP48-213ENST00000529637 DIRC1Q969H9 104 aa9.44□□□□□ -0.9
USP48-213ENST00000529637 KPRPQ5T749 579 aaPredicted RBP9.43□□□□□ -0.9
USP48-213ENST00000529637 ZNF73O43830 326 aaPredicted RBP9.43□□□□□ -0.9
USP48-213ENST00000529637 CAMK2N2Q96S95 79 aa9.43□□□□□ -0.9
USP48-213ENST00000529637 IGKV4-1P06312 121 aa9.42□□□□□ -0.9
USP48-213ENST00000529637 Q6ZTC4 211 aa9.41□□□□□ -0.9
USP48-213ENST00000529637 TENM3Q9P273 2699 aa9.41□□□□□ -0.9
USP48-213ENST00000529637 A0A0J9YWU9 116 aa9.41□□□□□ -0.9
USP48-213ENST00000529637 HIGD2AQ9BW72 106 aa9.41□□□□□ -0.9
USP48-213ENST00000529637 PRR34Q9NV39 138 aa9.41□□□□□ -0.9
USP48-213ENST00000529637 C6orf48Q9UBA6 75 aa9.41□□□□□ -0.9
USP48-213ENST00000529637 COX7BP24311 80 aa9.41□□□□□ -0.9
USP48-213ENST00000529637 OCR1Q9BZK8 76 aa9.4□□□□□ -0.9
USP48-213ENST00000529637 C3orf84H3BNL1 204 aa9.39□□□□□ -0.91
USP48-213ENST00000529637 ELOF1P60002 83 aaKnown RBP9.39□□□□□ -0.91
USP48-213ENST00000529637 PRYO14603 147 aa9.38□□□□□ -0.91
USP48-213ENST00000529637 LRCOL1A6NCL2 159 aa9.37□□□□□ -0.91
USP48-213ENST00000529637 IGKV2D-24A0A075B6R9 120 aa9.37□□□□□ -0.91
USP48-213ENST00000529637 ATP5EP56381 51 aaPredicted RBP9.37□□□□□ -0.91
USP48-213ENST00000529637 FUSP35637 526 aaKnown RBP eCLIP9.36□□□□□ -0.91
USP48-213ENST00000529637 KRTAP10-11P60412 298 aa9.35□□□□□ -0.91
USP48-213ENST00000529637 ESRGQ1W209 222 aa9.34□□□□□ -0.91
USP48-213ENST00000529637 Q6ZRU5 148 aa9.34□□□□□ -0.91
USP48-213ENST00000529637 ERC2-IT1O76042 136 aa9.34□□□□□ -0.91
USP48-213ENST00000529637 C1orf195Q5TG92 126 aa9.33□□□□□ -0.92
USP48-213ENST00000529637 FAM30AQ9NZY2 134 aa9.33□□□□□ -0.92
USP48-213ENST00000529637 H3BQ85 93 aa9.33□□□□□ -0.92
USP48-213ENST00000529637 VPREB1P12018 145 aa9.33□□□□□ -0.92
USP48-213ENST00000529637 FBN1P35555 2871 aaKnown RBP9.32□□□□□ -0.92
USP48-213ENST00000529637 COL6A5A8TX70 2615 aa9.32□□□□□ -0.92
USP48-213ENST00000529637 DEFB131BA0A096LNP1 70 aa9.32□□□□□ -0.92
USP48-213ENST00000529637 LINC00528Q8N1L1 170 aa9.32□□□□□ -0.92
USP48-213ENST00000529637 DEFB105AQ8NG35 78 aa9.32□□□□□ -0.92
USP48-213ENST00000529637 GVQW2A0A096LPI5 108 aaPredicted RBP9.31□□□□□ -0.92
USP48-213ENST00000529637 SMIM29Q86T20 159 aa9.3□□□□□ -0.92
USP48-213ENST00000529637 C11orf45Q8TAV5 145 aa9.29□□□□□ -0.92
USP48-213ENST00000529637 EGFEM1PQ0D2K5 195 aa9.29□□□□□ -0.92
USP48-213ENST00000529637 F8WDY8 70 aa9.29□□□□□ -0.92
USP48-213ENST00000529637 C15orf56Q8N910 161 aa9.28□□□□□ -0.92
USP48-213ENST00000529637 PRB2P02812 416 aaPredicted RBP9.27□□□□□ -0.92
USP48-213ENST00000529637 M0R378 163 aa9.27□□□□□ -0.93
USP48-213ENST00000529637 NBEAL1Q6ZS30 2694 aa9.27□□□□□ -0.93
USP48-213ENST00000529637 BAHCC1Q9P281 2608 aa9.26□□□□□ -0.93
USP48-213ENST00000529637 NKAPP1Q8N9T2 125 aa9.26□□□□□ -0.93
USP48-213ENST00000529637 SYCNQ0VAF6 134 aa9.25□□□□□ -0.93
USP48-213ENST00000529637 Q6ZRP5 223 aa9.25□□□□□ -0.93
USP48-213ENST00000529637 V9GYY9 64 aa9.25□□□□□ -0.93
USP48-213ENST00000529637 H3BNG1 76 aa9.25□□□□□ -0.93
USP48-213ENST00000529637 hDV103S1A0JD37 113 aa9.24□□□□□ -0.93
USP48-213ENST00000529637 Q8N377 158 aa9.24□□□□□ -0.93
USP48-213ENST00000529637 KRTAP24-1Q3LI83 254 aa9.24□□□□□ -0.93
USP48-213ENST00000529637 KRTAP26-1Q6PEX3 210 aa9.24□□□□□ -0.93
USP48-213ENST00000529637 PRR4Q16378 134 aa9.24□□□□□ -0.93
USP48-213ENST00000529637 C1orf64Q8NEQ6 169 aa9.23□□□□□ -0.93
USP48-213ENST00000529637 MGAM2Q2M2H8 2515 aa9.23□□□□□ -0.93
USP48-213ENST00000529637 SEC61GP60059 68 aa9.22□□□□□ -0.93
USP48-213ENST00000529637 LINC01556Q5JQF7 62 aa9.22□□□□□ -0.93
USP48-213ENST00000529637 A0A1W2PNM2 257 aa9.21□□□□□ -0.93
USP48-213ENST00000529637 PSPHP1O15172 72 aa9.2□□□□□ -0.94
USP48-213ENST00000529637 RPL37AP8A6NKH3 93 aa9.19□□□□□ -0.94
USP48-213ENST00000529637 IGLV5-48A0A075B6I7 105 aa9.18□□□□□ -0.94
USP48-213ENST00000529637 SERTAD4-AS1Q5TG53 156 aa9.17□□□□□ -0.94
USP48-213ENST00000529637 ST20-AS1Q8NBB2 130 aa9.17□□□□□ -0.94
USP48-213ENST00000529637 LCE6AA0A183 80 aa9.16□□□□□ -0.94
USP48-213ENST00000529637 K7EQZ3 153 aa9.16□□□□□ -0.94
USP48-213ENST00000529637 DSCR10P59022 87 aa9.16□□□□□ -0.94
USP48-213ENST00000529637 C7orf33Q8WU49 177 aa9.16□□□□□ -0.94
USP48-213ENST00000529637 ZCCHC13Q8WW36 166 aaKnown RBP9.16□□□□□ -0.94
USP48-213ENST00000529637 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.15□□□□□ -0.94
USP48-213ENST00000529637 A8MU10 97 aa9.15□□□□□ -0.94
USP48-213ENST00000529637 CASC10Q5T4H9 136 aa9.15□□□□□ -0.94
USP48-213ENST00000529637 A0A0G2JQZ4 141 aa9.14□□□□□ -0.95
USP48-213ENST00000529637 A0A1W2PNN7 141 aa9.14□□□□□ -0.95
USP48-213ENST00000529637 FAM168BA1KXE4 195 aa9.14□□□□□ -0.95
USP48-213ENST00000529637 Q1T7F1 81 aa9.14□□□□□ -0.95
USP48-213ENST00000529637 Q9BRP9 147 aa9.14□□□□□ -0.95
USP48-213ENST00000529637 C1orf137Q5JT78 98 aa9.13□□□□□ -0.95
USP48-213ENST00000529637 TRAV22A0A0B4J277 110 aa9.13□□□□□ -0.95
USP48-213ENST00000529637 LINC00588Q9Y4M8 146 aa9.13□□□□□ -0.95
USP48-213ENST00000529637 PRR15Q8IV56 129 aa9.12□□□□□ -0.95
USP48-213ENST00000529637 KCNQ1DNQ9H478 68 aa9.12□□□□□ -0.95
USP48-213ENST00000529637 DNAH10OSP0CZ25 163 aa9.12□□□□□ -0.95
USP48-213ENST00000529637 ANK2Q01484 3957 aa9.12□□□□□ -0.95
USP48-213ENST00000529637 DEFB116Q30KQ4 102 aa9.12□□□□□ -0.95
USP48-213ENST00000529637 ETDCA0A1B0GVM5 59 aa9.11□□□□□ -0.95
USP48-213ENST00000529637 STAB2Q8WWQ8 2551 aa9.11□□□□□ -0.95
USP48-213ENST00000529637 TNP2Q05952 138 aa9.1□□□□□ -0.95
USP48-213ENST00000529637 PMAIP1Q13794 54 aa9.09□□□□□ -0.95
USP48-213ENST00000529637 Q8NBF4 154 aa9.09□□□□□ -0.95
USP48-213ENST00000529637 A8MUN3 132 aa9.08□□□□□ -0.96
USP48-213ENST00000529637 UBE2BP63146 152 aa9.07□□□□□ -0.96
USP48-213ENST00000529637 Q6ZRX8 168 aa9.07□□□□□ -0.96
USP48-213ENST00000529637 SRRM2Q9UQ35 2752 aaKnown RBP9.06□□□□□ -0.96
USP48-213ENST00000529637 PSCAO43653 123 aa9.05□□□□□ -0.96
USP48-213ENST00000529637 IGKV2-24A0A0C4DH68 120 aa9.05□□□□□ -0.96
USP48-213ENST00000529637 KRTAP4-16G5E9R7 235 aaPredicted RBP9.05□□□□□ -0.96
USP48-213ENST00000529637 SPRR4Q96PI1 79 aa9.05□□□□□ -0.96
USP48-213ENST00000529637 WFDC13Q8IUB5 93 aa9.04□□□□□ -0.96
USP48-213ENST00000529637 HCG22E2RYF7 251 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms