RNA–Protein interactions for RNA: ENST00000518604.1

SQLE-202, Transcript of squalene epoxidase, humanhuman

TSL 2

Gene SQLE, Length 743 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQLE-202ENST00000518604 DEFB121Q5J5C9 76 aa0.12□□□□□ -2.39
SQLE-202ENST00000518604 MRPL34Q9BQ48 92 aaKnown RBP0.12□□□□□ -2.39
SQLE-202ENST00000518604 SPRR2GQ9BYE4 73 aa0.12□□□□□ -2.39
SQLE-202ENST00000518604 TIAM2Q8IVF5 1701 aa0.12□□□□□ -2.39
SQLE-202ENST00000518604 KNL1Q8NG31 2342 aa0.12□□□□□ -2.39
SQLE-202ENST00000518604 ARFGEF2Q9Y6D5 1785 aa0.11□□□□□ -2.39
SQLE-202ENST00000518604 H3BUT2 72 aa0.11□□□□□ -2.39
SQLE-202ENST00000518604 COX8AP10176 69 aa0.11□□□□□ -2.39
SQLE-202ENST00000518604 H1FX-AS1Q4G0G2 97 aa0.11□□□□□ -2.39
SQLE-202ENST00000518604 S100A13Q99584 98 aa0.11□□□□□ -2.39
SQLE-202ENST00000518604 URB2Q14146 1524 aaKnown RBP0.11□□□□□ -2.39
SQLE-202ENST00000518604 HSPG2P98160 4391 aa0.11□□□□□ -2.39
SQLE-202ENST00000518604 MAP1BP46821 2468 aaKnown RBP0.1□□□□□ -2.39
SQLE-202ENST00000518604 UBR3Q6ZT12 1888 aa0.1□□□□□ -2.39
SQLE-202ENST00000518604 PTPN23Q9H3S7 1636 aa0.1□□□□□ -2.39
SQLE-202ENST00000518604 ABCC1P33527 1531 aa0.1□□□□□ -2.39
SQLE-202ENST00000518604 SPTY2D1-AS1A0A0U1RR47 76 aa0.1□□□□□ -2.39
SQLE-202ENST00000518604 KANTRA0A1W2PQU2 76 aa0.1□□□□□ -2.39
SQLE-202ENST00000518604 ADIRFQ15847 76 aa0.1□□□□□ -2.39
SQLE-202ENST00000518604 IQGAP3Q86VI3 1631 aa0.09□□□□□ -2.39
SQLE-202ENST00000518604 COL7A1Q02388 2944 aa0.09□□□□□ -2.39
SQLE-202ENST00000518604 TNRC6CQ9HCJ0 1690 aaKnown RBP0.09□□□□□ -2.39
SQLE-202ENST00000518604 LCE6AA0A183 80 aa0.09□□□□□ -2.4
SQLE-202ENST00000518604 I3L3M4 83 aa0.09□□□□□ -2.4
SQLE-202ENST00000518604 IFI6P09912 130 aa0.09□□□□□ -2.4
SQLE-202ENST00000518604 HMGA1P17096 107 aaKnown RBP0.09□□□□□ -2.4
SQLE-202ENST00000518604 GAFA1Q96PS6 74 aa0.09□□□□□ -2.4
SQLE-202ENST00000518604 APLNQ9ULZ1 77 aa0.09□□□□□ -2.4
SQLE-202ENST00000518604 NWD1Q149M9 1564 aa0.09□□□□□ -2.4
SQLE-202ENST00000518604 TRANK1O15050 2925 aa0.09□□□□□ -2.4
SQLE-202ENST00000518604 NESP48681 1621 aa0.09□□□□□ -2.4
SQLE-202ENST00000518604 RGPD8O14715 1765 aaPredicted RBP0.09□□□□□ -2.4
SQLE-202ENST00000518604 RGPD5Q99666 1765 aa0.09□□□□□ -2.4
SQLE-202ENST00000518604 SETXQ7Z333 2677 aaKnown RBP0.09□□□□□ -2.4
SQLE-202ENST00000518604 FLNCQ14315 2725 aa0.08□□□□□ -2.4
SQLE-202ENST00000518604 CFAP43Q8NDM7 1665 aa0.08□□□□□ -2.4
SQLE-202ENST00000518604 CLIP1P30622 1438 aa0.08□□□□□ -2.4
SQLE-202ENST00000518604 EIF2AK4Q9P2K8 1649 aaKnown RBP0.08□□□□□ -2.4
SQLE-202ENST00000518604 CCDC88BA6NC98 1476 aa0.08□□□□□ -2.4
SQLE-202ENST00000518604 LRP2P98164 4655 aa0.08□□□□□ -2.4
SQLE-202ENST00000518604 WNK1Q9H4A3 2382 aa0.08□□□□□ -2.4
SQLE-202ENST00000518604 MYO5CQ9NQX4 1742 aa0.07□□□□□ -2.4
SQLE-202ENST00000518604 SPRR2DP22532 72 aa0.07□□□□□ -2.4
SQLE-202ENST00000518604 C18orf32Q8TCD1 76 aa0.07□□□□□ -2.4
SQLE-202ENST00000518604 FXYD6Q9H0Q3 95 aa0.07□□□□□ -2.4
SQLE-202ENST00000518604 C4AP0C0L4 1744 aa0.07□□□□□ -2.4
SQLE-202ENST00000518604 C4BP0C0L5 1744 aa0.07□□□□□ -2.4
SQLE-202ENST00000518604 RICTORQ6R327 1708 aa0.07□□□□□ -2.4
SQLE-202ENST00000518604 PARP4Q9UKK3 1724 aaKnown RBP0.07□□□□□ -2.4
SQLE-202ENST00000518604 DCHS2Q6V1P9 2916 aa0.07□□□□□ -2.4
SQLE-202ENST00000518604 ADAMTS12P58397 1594 aa0.06□□□□□ -2.4
SQLE-202ENST00000518604 LRP1BQ9NZR2 4599 aa0.06□□□□□ -2.4
SQLE-202ENST00000518604 PLCH1Q4KWH8 1693 aa0.06□□□□□ -2.4
SQLE-202ENST00000518604 WFDC9Q8NEX5 89 aa0.06□□□□□ -2.4
SQLE-202ENST00000518604 MACF1Q9UPN3 7388 aaKnown RBP0.06□□□□□ -2.4
SQLE-202ENST00000518604 AKAP13Q12802 2813 aa0.05□□□□□ -2.4
SQLE-202ENST00000518604 ANKARQ7Z5J8 1434 aa0.05□□□□□ -2.4
SQLE-202ENST00000518604 SSPOA2VEC9 5147 aa0.05□□□□□ -2.4
SQLE-202ENST00000518604 CCL22O00626 93 aa0.05□□□□□ -2.4
SQLE-202ENST00000518604 ATP5EP2Q5VTU8 51 aa0.05□□□□□ -2.4
SQLE-202ENST00000518604 NSD1Q96L73 2696 aaPredicted RBP0.04□□□□□ -2.4
SQLE-202ENST00000518604 COL6A3P12111 3177 aa0.04□□□□□ -2.4
SQLE-202ENST00000518604 NDUFB1O75438 58 aa0.04□□□□□ -2.4
SQLE-202ENST00000518604 SMIM13P0DJ93 91 aa0.04□□□□□ -2.4
SQLE-202ENST00000518604 WIZO95785 1651 aa0.04□□□□□ -2.4
SQLE-202ENST00000518604 TENM2Q9NT68 2774 aa0.04□□□□□ -2.4
SQLE-202ENST00000518604 LYSTQ99698 3801 aa0.04□□□□□ -2.4
SQLE-202ENST00000518604 PKHD1P08F94 4074 aa0.03□□□□□ -2.4
SQLE-202ENST00000518604 APC2O95996 2303 aa0.03□□□□□ -2.4
SQLE-202ENST00000518604 CICQ96RK0 1608 aaPredicted RBP0.03□□□□□ -2.4
SQLE-202ENST00000518604 RNF17Q9BXT8 1623 aaKnown RBP0.03□□□□□ -2.4
SQLE-202ENST00000518604 UMAD1C9J7I0 102 aa0.03□□□□□ -2.4
SQLE-202ENST00000518604 SPINK4O60575 86 aa0.03□□□□□ -2.4
SQLE-202ENST00000518604 NDUFA3O95167 84 aa0.03□□□□□ -2.4
SQLE-202ENST00000518604 NREPQ16612 68 aa0.03□□□□□ -2.4
SQLE-202ENST00000518604 WFDC13Q8IUB5 93 aa0.03□□□□□ -2.4
SQLE-202ENST00000518604 ITSN1Q15811 1721 aa0.03□□□□□ -2.4
SQLE-202ENST00000518604 PKD1P98161 4303 aa0.03□□□□□ -2.4
SQLE-202ENST00000518604 FLNAP21333 2647 aaKnown RBP0.03□□□□□ -2.4
SQLE-202ENST00000518604 UGGT2Q9NYU1 1516 aa0.03□□□□□ -2.41
SQLE-202ENST00000518604 PLXNC1O60486 1568 aa0.02□□□□□ -2.41
SQLE-202ENST00000518604 DSPP15924 2871 aaKnown RBP0.02□□□□□ -2.41
SQLE-202ENST00000518604 ACANP16112 2415 aa0.02□□□□□ -2.41
SQLE-202ENST00000518604 IFI27P40305 119 aaPredicted RBP0.02□□□□□ -2.41
SQLE-202ENST00000518604 COX6B2Q6YFQ2 88 aa0.02□□□□□ -2.41
SQLE-202ENST00000518604 HECTD1Q9ULT8 2610 aa0.02□□□□□ -2.41
SQLE-202ENST00000518604 CDC42BPGQ6DT37 1551 aa0.02□□□□□ -2.41
SQLE-202ENST00000518604 DNMBPQ6XZF7 1577 aa0.02□□□□□ -2.41
SQLE-202ENST00000518604 TJP1Q07157 1748 aa0.01□□□□□ -2.41
SQLE-202ENST00000518604 PDE4DIPQ5VU43 2346 aa0.01□□□□□ -2.41
SQLE-202ENST00000518604 HEPN1Q6WQI6 88 aa0.01□□□□□ -2.41
SQLE-202ENST00000518604 CDKN2A-AS1Q9UH64 79 aa0.01□□□□□ -2.41
SQLE-202ENST00000518604 TNRC18O15417 2968 aaPredicted RBP0□□□□□ -2.41
SQLE-202ENST00000518604 H0YAA0 97 aa0□□□□□ -2.41
SQLE-202ENST00000518604 NDUFA4O00483 81 aa0□□□□□ -2.41
SQLE-202ENST00000518604 RPL38P63173 70 aaKnown RBP0□□□□□ -2.41
SQLE-202ENST00000518604 DIP2AQ14689 1571 aa0□□□□□ -2.41
SQLE-202ENST00000518604 DDX60LQ5H9U9 1706 aaKnown RBP0□□□□□ -2.41
SQLE-202ENST00000518604 NRAPQ86VF7 1730 aa0□□□□□ -2.41
SQLE-202ENST00000518604 ABCA9Q8IUA7 1624 aa0□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms