RNA–Protein interactions for RNA: ENST00000507449.1

LSM6-205, Transcript of LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 3

Gene LSM6, Length 371 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM6-205ENST00000507449 NCOA3Q9Y6Q9 1424 aa-0.74□□□□□ -2.53
LSM6-205ENST00000507449 NKTRP30414 1462 aaKnown RBP-0.74□□□□□ -2.53
LSM6-205ENST00000507449 SLIT1O75093 1534 aa-0.74□□□□□ -2.53
LSM6-205ENST00000507449 MARF1Q9Y4F3 1742 aaKnown RBP-0.75□□□□□ -2.53
LSM6-205ENST00000507449 TRRAPQ9Y4A5 3859 aa-0.75□□□□□ -2.53
LSM6-205ENST00000507449 SPTAN1Q13813 2472 aaKnown RBP-0.75□□□□□ -2.53
LSM6-205ENST00000507449 TRBV25-1A0A075B6N4 114 aa-0.75□□□□□ -2.53
LSM6-205ENST00000507449 GNGT2O14610 69 aa-0.75□□□□□ -2.53
LSM6-205ENST00000507449 MT1AP04731 61 aa-0.75□□□□□ -2.53
LSM6-205ENST00000507449 PRUNE2Q8WUY3 3088 aa-0.75□□□□□ -2.53
LSM6-205ENST00000507449 DYNC2H1Q8NCM8 4307 aaKnown RBP-0.75□□□□□ -2.53
LSM6-205ENST00000507449 H7BZZ5 65 aa-0.76□□□□□ -2.53
LSM6-205ENST00000507449 H1FX-AS1Q4G0G2 97 aa-0.76□□□□□ -2.53
LSM6-205ENST00000507449 VAMP8Q9BV40 100 aa-0.76□□□□□ -2.53
LSM6-205ENST00000507449 PAPPA2Q9BXP8 1791 aa-0.76□□□□□ -2.53
LSM6-205ENST00000507449 CSMD2Q7Z408 3487 aa-0.76□□□□□ -2.53
LSM6-205ENST00000507449 DNAH8Q96JB1 4490 aa-0.76□□□□□ -2.53
LSM6-205ENST00000507449 BPTFQ12830 3046 aa-0.77□□□□□ -2.53
LSM6-205ENST00000507449 EDC4Q6P2E9 1401 aaKnown RBP-0.77□□□□□ -2.53
LSM6-205ENST00000507449 H0Y9P7 68 aa-0.77□□□□□ -2.53
LSM6-205ENST00000507449 H0YAA0 97 aa-0.77□□□□□ -2.53
LSM6-205ENST00000507449 H3BQF6 201 aa-0.77□□□□□ -2.53
LSM6-205ENST00000507449 MT-ATP8P03928 68 aa-0.77□□□□□ -2.53
LSM6-205ENST00000507449 MT1GP13640 62 aa-0.77□□□□□ -2.53
LSM6-205ENST00000507449 PSMG4Q5JS54 123 aa-0.77□□□□□ -2.53
LSM6-205ENST00000507449 MT1MQ8N339 61 aa-0.77□□□□□ -2.53
LSM6-205ENST00000507449 TRANK1O15050 2925 aa-0.77□□□□□ -2.53
LSM6-205ENST00000507449 CENPEQ02224 2701 aa-0.78□□□□□ -2.53
LSM6-205ENST00000507449 PRDM15P57071 1507 aaPredicted RBP-0.78□□□□□ -2.53
LSM6-205ENST00000507449 MLH3Q9UHC1 1453 aa-0.78□□□□□ -2.53
LSM6-205ENST00000507449 FRYQ5TBA9 3013 aa-0.78□□□□□ -2.53
LSM6-205ENST00000507449 NDUFC1O43677 76 aa-0.78□□□□□ -2.53
LSM6-205ENST00000507449 MT2AP02795 61 aa-0.78□□□□□ -2.53
LSM6-205ENST00000507449 DEFB1P60022 68 aa-0.78□□□□□ -2.53
LSM6-205ENST00000507449 PDCD11Q14690 1871 aaKnown RBP-0.78□□□□□ -2.53
LSM6-205ENST00000507449 ABCA3Q99758 1704 aa-0.78□□□□□ -2.53
LSM6-205ENST00000507449 LRBAP50851 2863 aa-0.78□□□□□ -2.54
LSM6-205ENST00000507449 TRIOO75962 3097 aa-0.79□□□□□ -2.54
LSM6-205ENST00000507449 CEP290O15078 2479 aa-0.79□□□□□ -2.54
LSM6-205ENST00000507449 PMCHL1Q16048 86 aa-0.79□□□□□ -2.54
LSM6-205ENST00000507449 DEFB112Q30KQ8 113 aa-0.79□□□□□ -2.54
LSM6-205ENST00000507449 C14orf144Q96I85 54 aa-0.79□□□□□ -2.54
LSM6-205ENST00000507449 TRGV9Q99603 122 aa-0.79□□□□□ -2.54
LSM6-205ENST00000507449 KNDC1Q76NI1 1749 aa-0.79□□□□□ -2.54
LSM6-205ENST00000507449 FREM2Q5SZK8 3169 aa-0.79□□□□□ -2.54
LSM6-205ENST00000507449 C5orf42Q9H799 3197 aa-0.8□□□□□ -2.54
LSM6-205ENST00000507449 CCDC141Q6ZP82 1450 aa-0.8□□□□□ -2.54
LSM6-205ENST00000507449 DCHS1Q96JQ0 3298 aa-0.8□□□□□ -2.54
LSM6-205ENST00000507449 K7EP34 96 aa-0.8□□□□□ -2.54
LSM6-205ENST00000507449 S100PP25815 95 aa-0.8□□□□□ -2.54
LSM6-205ENST00000507449 KRTAP8-1Q8IUC2 63 aa-0.8□□□□□ -2.54
LSM6-205ENST00000507449 DMDP11532 3685 aa-0.8□□□□□ -2.54
LSM6-205ENST00000507449 SPEGQ15772 3267 aa-0.81□□□□□ -2.54
LSM6-205ENST00000507449 ANKRD36BQ8N2N9 1353 aa-0.81□□□□□ -2.54
LSM6-205ENST00000507449 TARBP1Q13395 1621 aaKnown RBP-0.81□□□□□ -2.54
LSM6-205ENST00000507449 TMEM218A2RU14 115 aa-0.81□□□□□ -2.54
LSM6-205ENST00000507449 I3L3M4 83 aa-0.81□□□□□ -2.54
LSM6-205ENST00000507449 GNGT1P63211 74 aa-0.81□□□□□ -2.54
LSM6-205ENST00000507449 C9orf62Q8N4C0 152 aa-0.81□□□□□ -2.54
LSM6-205ENST00000507449 NRXN1Q9ULB1 1477 aa-0.81□□□□□ -2.54
LSM6-205ENST00000507449 CRYBG3Q68DQ2 2970 aa-0.81□□□□□ -2.54
LSM6-205ENST00000507449 SPTBN5Q9NRC6 3674 aaKnown RBP-0.82□□□□□ -2.54
LSM6-205ENST00000507449 PMCHL2Q9BQD1 86 aa-0.82□□□□□ -2.54
LSM6-205ENST00000507449 TRAV30A0A087WSZ9 112 aa-0.83□□□□□ -2.54
LSM6-205ENST00000507449 MPC2O95563 127 aa-0.83□□□□□ -2.54
LSM6-205ENST00000507449 SMR3BP02814 79 aaPredicted RBP-0.83□□□□□ -2.54
LSM6-205ENST00000507449 ARMS2P0C7Q2 107 aa-0.83□□□□□ -2.54
LSM6-205ENST00000507449 S100A10P60903 97 aa-0.83□□□□□ -2.54
LSM6-205ENST00000507449 LELP1Q5T871 98 aa-0.83□□□□□ -2.54
LSM6-205ENST00000507449 MRPL34Q9BQ48 92 aaKnown RBP-0.83□□□□□ -2.54
LSM6-205ENST00000507449 CEP350Q5VT06 3117 aa-0.84□□□□□ -2.54
LSM6-205ENST00000507449 UQCRHP07919 91 aa-0.84□□□□□ -2.54
LSM6-205ENST00000507449 SERP2Q8N6R1 65 aa-0.84□□□□□ -2.54
LSM6-205ENST00000507449 ATP6V1G2-DDX39BF2Z307 99 aa-0.85□□□□□ -2.55
LSM6-205ENST00000507449 H0YGG7 62 aa-0.85□□□□□ -2.55
LSM6-205ENST00000507449 H3BNG1 76 aa-0.85□□□□□ -2.55
LSM6-205ENST00000507449 MT1FP04733 61 aa-0.85□□□□□ -2.55
LSM6-205ENST00000507449 MT1LQ93083 61 aa-0.85□□□□□ -2.55
LSM6-205ENST00000507449 LOC400499M0QZD8 3231 aa-0.86□□□□□ -2.55
LSM6-205ENST00000507449 EP400Q96L91 3159 aa-0.86□□□□□ -2.55
LSM6-205ENST00000507449 ATOX1O00244 68 aa-0.86□□□□□ -2.55
LSM6-205ENST00000507449 MT1EP04732 61 aa-0.86□□□□□ -2.55
LSM6-205ENST00000507449 SHPRHQ149N8 1683 aa-0.86□□□□□ -2.55
LSM6-205ENST00000507449 RAPGEF2Q9Y4G8 1499 aa-0.86□□□□□ -2.55
LSM6-205ENST00000507449 LRRC37AA6NMS7 1700 aa-0.86□□□□□ -2.55
LSM6-205ENST00000507449 WDFY4Q6ZS81 3184 aa-0.87□□□□□ -2.55
LSM6-205ENST00000507449 PSENENQ9NZ42 101 aa-0.87□□□□□ -2.55
LSM6-205ENST00000507449 AP4S1Q9Y587 144 aa-0.87□□□□□ -2.55
LSM6-205ENST00000507449 MGAQ8IWI9 3026 aa-0.87□□□□□ -2.55
LSM6-205ENST00000507449 CUX1P39880 1505 aa-0.88□□□□□ -2.55
LSM6-205ENST00000507449 TCEAL7Q9BRU2 100 aa-0.88□□□□□ -2.55
LSM6-205ENST00000507449 SAMD9Q5K651 1589 aa-0.88□□□□□ -2.55
LSM6-205ENST00000507449 KIAA1551Q9HCM1 1747 aa-0.89□□□□□ -2.55
LSM6-205ENST00000507449 CFAP54Q96N23 3096 aa-0.89□□□□□ -2.55
LSM6-205ENST00000507449 TRBV7-7A0A0K0K1E9 115 aa-0.89□□□□□ -2.55
LSM6-205ENST00000507449 RBP2P50120 134 aa-0.89□□□□□ -2.55
LSM6-205ENST00000507449 HEPN1Q6WQI6 88 aa-0.89□□□□□ -2.55
LSM6-205ENST00000507449 CDC42BPGQ6DT37 1551 aa-0.89□□□□□ -2.55
LSM6-205ENST00000507449 SPTY2D1-AS1A0A0U1RR47 76 aa-0.9□□□□□ -2.55
LSM6-205ENST00000507449 CCL22O00626 93 aa-0.9□□□□□ -2.55
Retrieved 100 of 20,778 RNA–protein pairs in 85.7 ms