RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 C1orf137Q5JT78 98 aa8.58□□□□□ -1.04
C9orf3-221ENST00000489562 ZNF73O43830 326 aaPredicted RBP8.57□□□□□ -1.04
C9orf3-221ENST00000489562 DIRC1Q969H9 104 aa8.57□□□□□ -1.04
C9orf3-221ENST00000489562 ETDCA0A1B0GVM5 59 aa8.56□□□□□ -1.04
C9orf3-221ENST00000489562 Q8N1X5 172 aa8.56□□□□□ -1.04
C9orf3-221ENST00000489562 Q5VSD8 79 aa8.55□□□□□ -1.04
C9orf3-221ENST00000489562 SMIM11BQ8TCY0 68 aa8.55□□□□□ -1.04
C9orf3-221ENST00000489562 TRBV7-6A0A0J9YX20 115 aa8.54□□□□□ -1.04
C9orf3-221ENST00000489562 PCP4L1A6NKN8 68 aa8.54□□□□□ -1.04
C9orf3-221ENST00000489562 KRTAP4-16G5E9R7 235 aaPredicted RBP8.54□□□□□ -1.04
C9orf3-221ENST00000489562 H0Y9J4 135 aa8.54□□□□□ -1.04
C9orf3-221ENST00000489562 K7ERJ3 54 aa8.54□□□□□ -1.04
C9orf3-221ENST00000489562 IGLV7-43P04211 117 aa8.54□□□□□ -1.04
C9orf3-221ENST00000489562 RPL28P46779 137 aaKnown RBP8.54□□□□□ -1.04
C9orf3-221ENST00000489562 Q1RN00 199 aa8.54□□□□□ -1.04
C9orf3-221ENST00000489562 C6orf99Q4VX62 202 aa8.54□□□□□ -1.04
C9orf3-221ENST00000489562 FAM19A1Q7Z5A9 133 aa8.54□□□□□ -1.04
C9orf3-221ENST00000489562 H7C2G1 150 aa8.53□□□□□ -1.04
C9orf3-221ENST00000489562 UBE2AP49459 152 aa8.53□□□□□ -1.04
C9orf3-221ENST00000489562 BATFQ16520 125 aa8.53□□□□□ -1.04
C9orf3-221ENST00000489562 VAMP3Q15836 100 aa8.52□□□□□ -1.05
C9orf3-221ENST00000489562 KIAA1109Q2LD37 5005 aa8.52□□□□□ -1.05
C9orf3-221ENST00000489562 PCLOQ9Y6V0 5065 aa8.52□□□□□ -1.05
C9orf3-221ENST00000489562 RYR1P21817 5038 aa8.51□□□□□ -1.05
C9orf3-221ENST00000489562 B5MCH6 92 aa8.51□□□□□ -1.05
C9orf3-221ENST00000489562 ZNF861PO60384 105 aa8.51□□□□□ -1.05
C9orf3-221ENST00000489562 KRTAP10-4P60372 401 aaPredicted RBP8.51□□□□□ -1.05
C9orf3-221ENST00000489562 Q6ZRX8 168 aa8.51□□□□□ -1.05
C9orf3-221ENST00000489562 HERC2O95714 4834 aa8.5□□□□□ -1.05
C9orf3-221ENST00000489562 COX7BP24311 80 aa8.5□□□□□ -1.05
C9orf3-221ENST00000489562 ELOF1P60002 83 aaKnown RBP8.5□□□□□ -1.05
C9orf3-221ENST00000489562 KRTAP13-1Q8IUC0 172 aa8.5□□□□□ -1.05
C9orf3-221ENST00000489562 TSPAN13O95857 204 aa8.49□□□□□ -1.05
C9orf3-221ENST00000489562 PRLHP81277 87 aa8.49□□□□□ -1.05
C9orf3-221ENST00000489562 SNHG12Q9BXW3 62 aa8.49□□□□□ -1.05
C9orf3-221ENST00000489562 HSPG2P98160 4391 aa8.48□□□□□ -1.05
C9orf3-221ENST00000489562 H0YGX0 51 aa8.47□□□□□ -1.05
C9orf3-221ENST00000489562 COX6CP09669 75 aa8.47□□□□□ -1.05
C9orf3-221ENST00000489562 INAFM2P0DMQ5 153 aa8.47□□□□□ -1.05
C9orf3-221ENST00000489562 PSMB2P49721 201 aa8.47□□□□□ -1.05
C9orf3-221ENST00000489562 SPINK6Q6UWN8 80 aa8.47□□□□□ -1.05
C9orf3-221ENST00000489562 DHRS4-AS1Q9P1J3 65 aa8.47□□□□□ -1.05
C9orf3-221ENST00000489562 HIGD2AQ9BW72 106 aa8.46□□□□□ -1.06
C9orf3-221ENST00000489562 TRIAP1O43715 76 aa8.45□□□□□ -1.06
C9orf3-221ENST00000489562 COL5A1-AS1Q5SY13 56 aa8.45□□□□□ -1.06
C9orf3-221ENST00000489562 SLC25A20O43772 301 aa8.44□□□□□ -1.06
C9orf3-221ENST00000489562 SMCR5Q8TEV8 140 aa8.44□□□□□ -1.06
C9orf3-221ENST00000489562 Q9BRP9 147 aa8.44□□□□□ -1.06
C9orf3-221ENST00000489562 SNCGO76070 127 aa8.43□□□□□ -1.06
C9orf3-221ENST00000489562 LYRM7Q5U5X0 104 aa8.42□□□□□ -1.06
C9orf3-221ENST00000489562 LINC00575Q6W349 94 aa8.42□□□□□ -1.06
C9orf3-221ENST00000489562 VPS13BQ7Z7G8 4022 aa8.41□□□□□ -1.06
C9orf3-221ENST00000489562 A0A1B0GX51 115 aa8.41□□□□□ -1.06
C9orf3-221ENST00000489562 ZNF706Q9Y5V0 76 aaPredicted RBP8.41□□□□□ -1.06
C9orf3-221ENST00000489562 FAT1Q14517 4588 aa8.41□□□□□ -1.06
C9orf3-221ENST00000489562 hADV29S1A0JD25 119 aa8.4□□□□□ -1.06
C9orf3-221ENST00000489562 C9orf118A6NHY6 69 aa8.4□□□□□ -1.06
C9orf3-221ENST00000489562 TAX1BP3O14907 124 aa8.4□□□□□ -1.06
C9orf3-221ENST00000489562 SCGB1C2P0DMR2 95 aa8.4□□□□□ -1.06
C9orf3-221ENST00000489562 SRRM2Q9UQ35 2752 aaKnown RBP8.4□□□□□ -1.06
C9orf3-221ENST00000489562 H3BUT2 72 aa8.38□□□□□ -1.07
C9orf3-221ENST00000489562 ERC2-IT1O76042 136 aa8.38□□□□□ -1.07
C9orf3-221ENST00000489562 NAA38Q9BRA0 125 aaKnown RBP8.37□□□□□ -1.07
C9orf3-221ENST00000489562 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.36□□□□□ -1.07
C9orf3-221ENST00000489562 CLEC2BQ92478 149 aa8.36□□□□□ -1.07
C9orf3-221ENST00000489562 FAM218AQ96MZ4 157 aa8.36□□□□□ -1.07
C9orf3-221ENST00000489562 SPRR4Q96PI1 79 aa8.36□□□□□ -1.07
C9orf3-221ENST00000489562 TRBV20-1A0A075B6N2 111 aa8.34□□□□□ -1.07
C9orf3-221ENST00000489562 A0A1W2PPM0 123 aa8.34□□□□□ -1.07
C9orf3-221ENST00000489562 DNAL4O96015 105 aa8.34□□□□□ -1.07
C9orf3-221ENST00000489562 GHRHP01286 108 aa8.34□□□□□ -1.07
C9orf3-221ENST00000489562 OCIAD2Q56VL3 154 aa8.34□□□□□ -1.07
C9orf3-221ENST00000489562 Q6ZQY7 126 aa8.34□□□□□ -1.07
C9orf3-221ENST00000489562 KRTAP4-5Q9BYR2 181 aa8.34□□□□□ -1.07
C9orf3-221ENST00000489562 LST1O00453 97 aa8.33□□□□□ -1.08
C9orf3-221ENST00000489562 TRACP01848 142 aa8.33□□□□□ -1.08
C9orf3-221ENST00000489562 FABP2P12104 132 aa8.33□□□□□ -1.08
C9orf3-221ENST00000489562 ATXN8Q156A1 80 aa8.33□□□□□ -1.08
C9orf3-221ENST00000489562 IGLV5-48A0A075B6I7 105 aa8.32□□□□□ -1.08
C9orf3-221ENST00000489562 KRTAP1-4P0C5Y4 121 aa8.32□□□□□ -1.08
C9orf3-221ENST00000489562 SPRR1BP22528 89 aa8.32□□□□□ -1.08
C9orf3-221ENST00000489562 FAM229BQ4G0N7 80 aa8.32□□□□□ -1.08
C9orf3-221ENST00000489562 LINC00483Q53H64 154 aa8.32□□□□□ -1.08
C9orf3-221ENST00000489562 GAGE2AQ6NT46 116 aa8.32□□□□□ -1.08
C9orf3-221ENST00000489562 ST20-AS1Q8NBB2 130 aa8.32□□□□□ -1.08
C9orf3-221ENST00000489562 PPDPFLQ8WWR9 84 aa8.32□□□□□ -1.08
C9orf3-221ENST00000489562 TEX49A0A1B0GTD5 131 aa8.31□□□□□ -1.08
C9orf3-221ENST00000489562 H3BQ85 93 aa8.31□□□□□ -1.08
C9orf3-221ENST00000489562 TCL1BO95988 128 aa8.3□□□□□ -1.08
C9orf3-221ENST00000489562 FLG2Q5D862 2391 aaPredicted RBP8.29□□□□□ -1.08
C9orf3-221ENST00000489562 DEFB105AQ8NG35 78 aa8.29□□□□□ -1.08
C9orf3-221ENST00000489562 CRYGAP11844 174 aa8.28□□□□□ -1.08
C9orf3-221ENST00000489562 LINC01547P58512 204 aaPredicted RBP8.28□□□□□ -1.08
C9orf3-221ENST00000489562 ORMDL1Q9P0S3 153 aa8.28□□□□□ -1.08
C9orf3-221ENST00000489562 Q8N377 158 aa8.27□□□□□ -1.09
C9orf3-221ENST00000489562 LINC01600Q96MT4 127 aa8.27□□□□□ -1.09
C9orf3-221ENST00000489562 LAMTOR3Q9UHA4 124 aa8.27□□□□□ -1.09
C9orf3-221ENST00000489562 SPCS1Q9Y6A9 102 aa8.27□□□□□ -1.09
C9orf3-221ENST00000489562 OXTP01178 125 aa8.26□□□□□ -1.09
C9orf3-221ENST00000489562 PKHD1L1Q86WI1 4243 aa8.26□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 50.1 ms