RNA–Protein interactions for RNA: ENST00000475146.1

CPNE1-223, Transcript of copine 1, human

TSL 3

Gene CPNE1, Length 627 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPNE1-223	ENST00000475146	LINC00304	Q8N9R0	145 aa		14.04	□□□□□ -0.16
CPNE1-223	ENST00000475146	SPANXC	Q9NY87	97 aa		14.04	□□□□□ -0.16
CPNE1-223	ENST00000475146	AKR1D1	P51857	326 aa		14.03	□□□□□ -0.16
CPNE1-223	ENST00000475146	SCGB1D4	Q6XE38	83 aa		14.03	□□□□□ -0.16
CPNE1-223	ENST00000475146	HIST3H2BB	Q8N257	126 aa		14.03	□□□□□ -0.16
CPNE1-223	ENST00000475146	C3orf22	Q8N5N4	141 aa		14.03	□□□□□ -0.16
CPNE1-223	ENST00000475146		Q6ZRX8	168 aa		14.01	□□□□□ -0.17
CPNE1-223	ENST00000475146	PPDPF	Q9H3Y8	114 aa		14	□□□□□ -0.17
CPNE1-223	ENST00000475146	S100A6	P06703	90 aa		13.99	□□□□□ -0.17
CPNE1-223	ENST00000475146	OR13C6P	Q8NH95	151 aa		13.99	□□□□□ -0.17
CPNE1-223	ENST00000475146	HIST1H2BL	Q99880	126 aa		13.99	□□□□□ -0.17
CPNE1-223	ENST00000475146	ZNF73	O43830	326 aa	Predicted RBP	13.98	□□□□□ -0.17
CPNE1-223	ENST00000475146	CBY1	Q9Y3M2	126 aa		13.98	□□□□□ -0.17
CPNE1-223	ENST00000475146	ERC2-IT1	O76042	136 aa		13.97	□□□□□ -0.17
CPNE1-223	ENST00000475146		Q9BRP9	147 aa		13.97	□□□□□ -0.17
CPNE1-223	ENST00000475146	JOSD1	Q15040	202 aa	Predicted RBP	13.96	□□□□□ -0.17
CPNE1-223	ENST00000475146	GAGE2A	Q6NT46	116 aa		13.96	□□□□□ -0.17
CPNE1-223	ENST00000475146	SPANXD	Q9BXN6	97 aa		13.96	□□□□□ -0.17
CPNE1-223	ENST00000475146	PCP2	Q8IVA1	136 aa		13.95	□□□□□ -0.18
CPNE1-223	ENST00000475146	HINT1	P49773	126 aa	Predicted RBP	13.93	□□□□□ -0.18
CPNE1-223	ENST00000475146	SNRPE	P62304	92 aa	Known RBP	13.93	□□□□□ -0.18
CPNE1-223	ENST00000475146	LINC00483	Q53H64	154 aa		13.92	□□□□□ -0.18
CPNE1-223	ENST00000475146	LINC00518	Q8N0U6	118 aa		13.92	□□□□□ -0.18
CPNE1-223	ENST00000475146	COPS9	Q8WXC6	57 aa		13.91	□□□□□ -0.18
CPNE1-223	ENST00000475146	HSBP1L1	C9JCN9	74 aa		13.89	□□□□□ -0.19
CPNE1-223	ENST00000475146	IFITM1	P13164	125 aa		13.89	□□□□□ -0.19
CPNE1-223	ENST00000475146	RETNLB	Q9BQ08	111 aa		13.89	□□□□□ -0.19
CPNE1-223	ENST00000475146		Q8NBF4	154 aa		13.88	□□□□□ -0.19
CPNE1-223	ENST00000475146	C4orf48	Q5BLP8	95 aa		13.87	□□□□□ -0.19
CPNE1-223	ENST00000475146	SPAG11A	Q6PDA7	123 aa		13.87	□□□□□ -0.19
CPNE1-223	ENST00000475146		Q6ZVH6	145 aa		13.87	□□□□□ -0.19
CPNE1-223	ENST00000475146	LPA	P08519	4548 aa		13.87	□□□□□ -0.19
CPNE1-223	ENST00000475146	CTAG1A	P78358	180 aa		13.86	□□□□□ -0.19
CPNE1-223	ENST00000475146	IGLV9-49	A0A0B4J1Y8	123 aa		13.85	□□□□□ -0.19
CPNE1-223	ENST00000475146	MOBP	Q13875	183 aa		13.84	□□□□□ -0.19
CPNE1-223	ENST00000475146	MUSTN1	Q8IVN3	82 aa		13.84	□□□□□ -0.19
CPNE1-223	ENST00000475146	C6orf99	Q4VX62	202 aa		13.82	□□□□□ -0.2
CPNE1-223	ENST00000475146	ST20-AS1	Q8NBB2	130 aa		13.82	□□□□□ -0.2
CPNE1-223	ENST00000475146	COX7B	P24311	80 aa		13.81	□□□□□ -0.2
CPNE1-223	ENST00000475146		A6NDN8	102 aa		13.8	□□□□□ -0.2
CPNE1-223	ENST00000475146	SCGB1D1	O95968	90 aa		13.8	□□□□□ -0.2
CPNE1-223	ENST00000475146	DHRS4-AS1	Q9P1J3	65 aa		13.8	□□□□□ -0.2
CPNE1-223	ENST00000475146	C5orf52	A6NGY3	159 aa		13.78	□□□□□ -0.2
CPNE1-223	ENST00000475146	ELOF1	P60002	83 aa	Known RBP	13.78	□□□□□ -0.2
CPNE1-223	ENST00000475146	C9orf153	Q5TBE3	101 aa		13.77	□□□□□ -0.21
CPNE1-223	ENST00000475146	SSBP3-AS1	Q7Z2R9	100 aa		13.76	□□□□□ -0.21
CPNE1-223	ENST00000475146	IGLV7-46	A0A075B6I9	117 aa		13.74	□□□□□ -0.21
CPNE1-223	ENST00000475146	SPINK1	P00995	79 aa		13.74	□□□□□ -0.21
CPNE1-223	ENST00000475146	TRAV13-2	A0A0B4J235	113 aa		13.73	□□□□□ -0.21
CPNE1-223	ENST00000475146	TRBV7-6	A0A0J9YX20	115 aa		13.71	□□□□□ -0.21
CPNE1-223	ENST00000475146		A0A1B0GWB2	263 aa		13.7	□□□□□ -0.22
CPNE1-223	ENST00000475146	SLC25A34	Q6PIV7	304 aa		13.69	□□□□□ -0.22
CPNE1-223	ENST00000475146	SPRR1B	P22528	89 aa		13.68	□□□□□ -0.22
CPNE1-223	ENST00000475146	RNF213	Q63HN8	5207 aa		13.66	□□□□□ -0.22
CPNE1-223	ENST00000475146	TAL2	Q16559	108 aa		13.66	□□□□□ -0.22
CPNE1-223	ENST00000475146	TPRXL	Q17RH7	258 aa		13.66	□□□□□ -0.22
CPNE1-223	ENST00000475146	DEFB105A	Q8NG35	78 aa		13.66	□□□□□ -0.22
CPNE1-223	ENST00000475146	SMIM11B	Q8TCY0	68 aa		13.66	□□□□□ -0.22
CPNE1-223	ENST00000475146		A4D1N5	150 aa		13.65	□□□□□ -0.22
CPNE1-223	ENST00000475146	FP248	Q71RG6	208 aa	Predicted RBP	13.65	□□□□□ -0.22
CPNE1-223	ENST00000475146	LAMTOR3	Q9UHA4	124 aa		13.65	□□□□□ -0.22
CPNE1-223	ENST00000475146	COX8A	P10176	69 aa		13.64	□□□□□ -0.23
CPNE1-223	ENST00000475146	CDIP1	Q9H305	208 aa		13.64	□□□□□ -0.23
CPNE1-223	ENST00000475146	RPS29	P62273	56 aa	Known RBP	13.63	□□□□□ -0.23
CPNE1-223	ENST00000475146	HIST1H4G	Q99525	98 aa		13.62	□□□□□ -0.23
CPNE1-223	ENST00000475146	TEX49	A0A1B0GTD5	131 aa		13.6	□□□□□ -0.23
CPNE1-223	ENST00000475146		Q1RN00	199 aa		13.6	□□□□□ -0.23
CPNE1-223	ENST00000475146		Q8N377	158 aa		13.59	□□□□□ -0.23
CPNE1-223	ENST00000475146	NHP2	Q9NX24	153 aa	Known RBP	13.59	□□□□□ -0.23
CPNE1-223	ENST00000475146	PAM16	Q9Y3D7	125 aa		13.59	□□□□□ -0.23
CPNE1-223	ENST00000475146	C12orf57	Q99622	126 aa		13.58	□□□□□ -0.24
CPNE1-223	ENST00000475146	DLEU1	O43261	78 aa		13.57	□□□□□ -0.24
CPNE1-223	ENST00000475146	SLC25A20	O43772	301 aa		13.57	□□□□□ -0.24
CPNE1-223	ENST00000475146	SPATA45	Q537H7	98 aa		13.57	□□□□□ -0.24
CPNE1-223	ENST00000475146	C14orf144	Q96I85	54 aa		13.57	□□□□□ -0.24
CPNE1-223	ENST00000475146	VAMP3	Q15836	100 aa		13.56	□□□□□ -0.24
CPNE1-223	ENST00000475146	VAMP8	Q9BV40	100 aa		13.55	□□□□□ -0.24
CPNE1-223	ENST00000475146	IGLV5-48	A0A075B6I7	105 aa		13.54	□□□□□ -0.24
CPNE1-223	ENST00000475146	HRCT1	Q6UXD1	115 aa		13.54	□□□□□ -0.24
CPNE1-223	ENST00000475146	LINC01547	P58512	204 aa	Predicted RBP	13.53	□□□□□ -0.24
CPNE1-223	ENST00000475146	SMIM29	Q86T20	159 aa		13.5	□□□□□ -0.25
CPNE1-223	ENST00000475146	PRO1933	Q9H354	126 aa		13.5	□□□□□ -0.25
CPNE1-223	ENST00000475146	KRTAP13-3	Q3SY46	172 aa		13.49	□□□□□ -0.25
CPNE1-223	ENST00000475146	LINC00575	Q6W349	94 aa		13.49	□□□□□ -0.25
CPNE1-223	ENST00000475146	LIMD2	Q9BT23	127 aa		13.48	□□□□□ -0.25
CPNE1-223	ENST00000475146	HIGD1B	Q9P298	99 aa		13.47	□□□□□ -0.25
CPNE1-223	ENST00000475146	hADV29S1	A0JD25	119 aa		13.44	□□□□□ -0.26
CPNE1-223	ENST00000475146		H7C2G1	150 aa		13.44	□□□□□ -0.26
CPNE1-223	ENST00000475146	C2orf91	Q6ZV80	131 aa		13.44	□□□□□ -0.26
CPNE1-223	ENST00000475146	RAB37	Q96AX2	223 aa		13.43	□□□□□ -0.26
CPNE1-223	ENST00000475146	CD164	Q04900	197 aa		13.42	□□□□□ -0.26
CPNE1-223	ENST00000475146	BVES-AS1	Q5T3Y7	98 aa		13.42	□□□□□ -0.26
CPNE1-223	ENST00000475146		Q6ZQY7	126 aa		13.42	□□□□□ -0.26
CPNE1-223	ENST00000475146	CFC1B	P0CG36	223 aa		13.41	□□□□□ -0.26
CPNE1-223	ENST00000475146	CFC1	P0CG37	223 aa		13.41	□□□□□ -0.26
CPNE1-223	ENST00000475146	TMA7	Q9Y2S6	64 aa	Known RBP	13.41	□□□□□ -0.26
CPNE1-223	ENST00000475146		F8WEM9	126 aa		13.4	□□□□□ -0.26
CPNE1-223	ENST00000475146		A0A0G2JQZ4	141 aa		13.39	□□□□□ -0.27
CPNE1-223	ENST00000475146		A0A0B4J2C4	111 aa		13.37	□□□□□ -0.27
CPNE1-223	ENST00000475146	PYY3	Q5JQD4	70 aa		13.37	□□□□□ -0.27

Retrieved 100 of 20,778 RNA–protein pairs in 70.2 ms