RNA–Protein interactions for RNA: ENST00000471834.1

SYNE1-220, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 7,229 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-220ENST00000471834 LELP1Q5T871 98 aa3.61□□□□□ -1.83
SYNE1-220ENST00000471834 CD164L2Q6UWJ8 174 aa3.61□□□□□ -1.83
SYNE1-220ENST00000471834 ATMQ13315 3056 aa3.61□□□□□ -1.83
SYNE1-220ENST00000471834 KRTAP4-16G5E9R7 235 aaPredicted RBP3.61□□□□□ -1.83
SYNE1-220ENST00000471834 IGLV1-51P01701 117 aa3.6□□□□□ -1.83
SYNE1-220ENST00000471834 RPL37AP61513 92 aaKnown RBP3.6□□□□□ -1.83
SYNE1-220ENST00000471834 DNAH14Q0VDD8 3507 aa3.6□□□□□ -1.83
SYNE1-220ENST00000471834 LINC00528Q8N1L1 170 aa3.6□□□□□ -1.83
SYNE1-220ENST00000471834 IGLV4-60A0A075B6I1 120 aa3.6□□□□□ -1.83
SYNE1-220ENST00000471834 DHRS4-AS1Q9P1J3 65 aa3.6□□□□□ -1.83
SYNE1-220ENST00000471834 NOTCH3Q9UM47 2321 aa3.6□□□□□ -1.83
SYNE1-220ENST00000471834 IGHV6-1A0A0B4J1U7 121 aa3.59□□□□□ -1.83
SYNE1-220ENST00000471834 A0A087WVE0 104 aa3.59□□□□□ -1.83
SYNE1-220ENST00000471834 Q6ZQY7 126 aa3.59□□□□□ -1.83
SYNE1-220ENST00000471834 FBN2P35556 2912 aa3.59□□□□□ -1.83
SYNE1-220ENST00000471834 LINC00588Q9Y4M8 146 aa3.59□□□□□ -1.83
SYNE1-220ENST00000471834 X6R8D5 127 aa3.59□□□□□ -1.83
SYNE1-220ENST00000471834 CYSRT1A8MQ03 144 aa3.59□□□□□ -1.83
SYNE1-220ENST00000471834 Q6ZTC4 211 aa3.59□□□□□ -1.83
SYNE1-220ENST00000471834 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP3.59□□□□□ -1.84
SYNE1-220ENST00000471834 USP24Q9UPU5 2620 aa3.59□□□□□ -1.84
SYNE1-220ENST00000471834 Q6ZVQ6 151 aa3.59□□□□□ -1.84
SYNE1-220ENST00000471834 DMXL1Q9Y485 3027 aa3.59□□□□□ -1.84
SYNE1-220ENST00000471834 TEP1Q99973 2627 aaKnown RBP3.58□□□□□ -1.84
SYNE1-220ENST00000471834 IGLV8-61A0A075B6I0 122 aa3.58□□□□□ -1.84
SYNE1-220ENST00000471834 ASB16-AS1Q495Z4 193 aa3.58□□□□□ -1.84
SYNE1-220ENST00000471834 SERTAD4-AS1Q5TG53 156 aa3.58□□□□□ -1.84
SYNE1-220ENST00000471834 ZNF73O43830 326 aaPredicted RBP3.58□□□□□ -1.84
SYNE1-220ENST00000471834 LINC01556Q5JQF7 62 aa3.58□□□□□ -1.84
SYNE1-220ENST00000471834 LINC01547P58512 204 aaPredicted RBP3.58□□□□□ -1.84
SYNE1-220ENST00000471834 IGLV5-37A0A075B6J1 123 aa3.58□□□□□ -1.84
SYNE1-220ENST00000471834 UNQ6190/PRO20217Q6UXQ8 127 aa3.58□□□□□ -1.84
SYNE1-220ENST00000471834 SPRR4Q96PI1 79 aa3.58□□□□□ -1.84
SYNE1-220ENST00000471834 PCOTHQ58A44 107 aa3.57□□□□□ -1.84
SYNE1-220ENST00000471834 LRBAP50851 2863 aa3.57□□□□□ -1.84
SYNE1-220ENST00000471834 KRTAP1-3Q8IUG1 177 aa3.57□□□□□ -1.84
SYNE1-220ENST00000471834 CR1P17927 2039 aa3.56□□□□□ -1.84
SYNE1-220ENST00000471834 PSPHP1O15172 72 aa3.56□□□□□ -1.84
SYNE1-220ENST00000471834 CHD6Q8TD26 2715 aa3.56□□□□□ -1.84
SYNE1-220ENST00000471834 A0A087X002 238 aa3.56□□□□□ -1.84
SYNE1-220ENST00000471834 Q9BRP9 147 aa3.56□□□□□ -1.84
SYNE1-220ENST00000471834 ELOF1P60002 83 aaKnown RBP3.56□□□□□ -1.84
SYNE1-220ENST00000471834 PLA2G2DQ9UNK4 145 aa3.56□□□□□ -1.84
SYNE1-220ENST00000471834 H3BNG1 76 aa3.56□□□□□ -1.84
SYNE1-220ENST00000471834 NSD1Q96L73 2696 aaPredicted RBP3.55□□□□□ -1.84
SYNE1-220ENST00000471834 SPINK1P00995 79 aa3.55□□□□□ -1.84
SYNE1-220ENST00000471834 H0Y9P7 68 aa3.55□□□□□ -1.84
SYNE1-220ENST00000471834 CELSR1Q9NYQ6 3014 aa3.55□□□□□ -1.84
SYNE1-220ENST00000471834 MTORP42345 2549 aa3.55□□□□□ -1.84
SYNE1-220ENST00000471834 CHTF8P0CG12 524 aa3.55□□□□□ -1.84
SYNE1-220ENST00000471834 Q1T7F1 81 aa3.55□□□□□ -1.84
SYNE1-220ENST00000471834 NF1P21359 2839 aa3.55□□□□□ -1.84
SYNE1-220ENST00000471834 DMDP11532 3685 aa3.55□□□□□ -1.84
SYNE1-220ENST00000471834 CELSR3Q9NYQ7 3312 aa3.55□□□□□ -1.84
SYNE1-220ENST00000471834 APCP25054 2843 aa3.54□□□□□ -1.84
SYNE1-220ENST00000471834 FASNP49327 2511 aaKnown RBP3.54□□□□□ -1.84
SYNE1-220ENST00000471834 ASH1LQ9NR48 2969 aaKnown RBP3.54□□□□□ -1.84
SYNE1-220ENST00000471834 WDFY3Q8IZQ1 3526 aa3.54□□□□□ -1.84
SYNE1-220ENST00000471834 ATP11AUNQ6ZP68 121 aa3.54□□□□□ -1.84
SYNE1-220ENST00000471834 C7orf65Q6ZTY9 151 aa3.54□□□□□ -1.84
SYNE1-220ENST00000471834 TMEM254Q8TBM7 123 aa3.54□□□□□ -1.84
SYNE1-220ENST00000471834 GCN1Q92616 2671 aaKnown RBP3.54□□□□□ -1.84
SYNE1-220ENST00000471834 SPRR1BP22528 89 aa3.53□□□□□ -1.84
SYNE1-220ENST00000471834 Q8N9L7 120 aa3.53□□□□□ -1.84
SYNE1-220ENST00000471834 VWFP04275 2813 aa3.53□□□□□ -1.84
SYNE1-220ENST00000471834 FLNBO75369 2602 aaKnown RBP3.53□□□□□ -1.84
SYNE1-220ENST00000471834 TLX1NBP0CAT3 122 aa3.53□□□□□ -1.84
SYNE1-220ENST00000471834 PRLHP81277 87 aa3.53□□□□□ -1.84
SYNE1-220ENST00000471834 PLAC8Q9NZF1 115 aa3.53□□□□□ -1.84
SYNE1-220ENST00000471834 SETD2Q9BYW2 2564 aaPredicted RBP3.53□□□□□ -1.84
SYNE1-220ENST00000471834 KRTAP29-1A8MX34 341 aaPredicted RBP3.53□□□□□ -1.84
SYNE1-220ENST00000471834 CD164Q04900 197 aa3.53□□□□□ -1.84
SYNE1-220ENST00000471834 KCNQ1DNQ9H478 68 aa3.53□□□□□ -1.84
SYNE1-220ENST00000471834 FN1P02751 2386 aaKnown RBP3.53□□□□□ -1.84
SYNE1-220ENST00000471834 HELZ2Q9BYK8 2649 aaKnown RBP3.53□□□□□ -1.84
SYNE1-220ENST00000471834 KRTAP1-1Q07627 177 aa3.53□□□□□ -1.84
SYNE1-220ENST00000471834 LINC00208Q96KT6 92 aa3.53□□□□□ -1.84
SYNE1-220ENST00000471834 HIVEP1P15822 2718 aa3.52□□□□□ -1.85
SYNE1-220ENST00000471834 LOC400499M0QZD8 3231 aa3.52□□□□□ -1.85
SYNE1-220ENST00000471834 hDV103S1A0JD37 113 aa3.52□□□□□ -1.85
SYNE1-220ENST00000471834 HCG22E2RYF7 251 aa3.52□□□□□ -1.85
SYNE1-220ENST00000471834 Q8N3U1 123 aa3.52□□□□□ -1.85
SYNE1-220ENST00000471834 SMIM29Q86T20 159 aa3.52□□□□□ -1.85
SYNE1-220ENST00000471834 TYMSOSQ8TAI1 123 aa3.52□□□□□ -1.85
SYNE1-220ENST00000471834 EGFEM1PQ0D2K5 195 aa3.52□□□□□ -1.85
SYNE1-220ENST00000471834 MYO15AQ9UKN7 3530 aa3.51□□□□□ -1.85
SYNE1-220ENST00000471834 LOC101927531A0A1B0GV80 90 aa3.51□□□□□ -1.85
SYNE1-220ENST00000471834 FLNAP21333 2647 aaKnown RBP3.51□□□□□ -1.85
SYNE1-220ENST00000471834 CELSR2Q9HCU4 2923 aa3.51□□□□□ -1.85
SYNE1-220ENST00000471834 LCE2DQ5TA82 110 aaPredicted RBP3.5□□□□□ -1.85
SYNE1-220ENST00000471834 RTL8CO15255 209 aa3.5□□□□□ -1.85
SYNE1-220ENST00000471834 NBDYA0A0U1RRE5 68 aa3.5□□□□□ -1.85
SYNE1-220ENST00000471834 Q6ZRP5 223 aa3.5□□□□□ -1.85
SYNE1-220ENST00000471834 SPEGQ15772 3267 aa3.5□□□□□ -1.85
SYNE1-220ENST00000471834 C4orf26Q17RF5 130 aa3.5□□□□□ -1.85
SYNE1-220ENST00000471834 SPANXA2-OT1Q8N9U9 137 aa3.5□□□□□ -1.85
SYNE1-220ENST00000471834 SMR3BP02814 79 aaPredicted RBP3.49□□□□□ -1.85
SYNE1-220ENST00000471834 TEX15Q9BXT5 2789 aa3.49□□□□□ -1.85
SYNE1-220ENST00000471834 H3BPC8 53 aa3.49□□□□□ -1.85
SYNE1-220ENST00000471834 SORL1Q92673 2214 aa3.48□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 64.9 ms