RNA–Protein interactions for RNA: ENST00000471488.1

HDAC1-204, Transcript of histone deacetylase 1, humanhuman

TSL 5

Gene HDAC1, Length 726 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-204ENST00000471488 NCR3O14931 201 aa3.73□□□□□ -1.81
HDAC1-204ENST00000471488 LINC00158P58513 81 aa3.73□□□□□ -1.81
HDAC1-204ENST00000471488 FAM19A3Q7Z5A8 133 aa3.73□□□□□ -1.81
HDAC1-204ENST00000471488 Q8NDZ9 215 aa3.73□□□□□ -1.81
HDAC1-204ENST00000471488 USH2AO75445 5202 aa3.72□□□□□ -1.81
HDAC1-204ENST00000471488 TINCRA0A1B0GVN0 87 aa3.72□□□□□ -1.81
HDAC1-204ENST00000471488 A0A1B0GXF2 115 aa3.72□□□□□ -1.81
HDAC1-204ENST00000471488 NAT8Q9UHE5 227 aa3.72□□□□□ -1.81
HDAC1-204ENST00000471488 KRTAP4-16G5E9R7 235 aaPredicted RBP3.71□□□□□ -1.82
HDAC1-204ENST00000471488 IGLV6-57P01721 117 aa3.71□□□□□ -1.82
HDAC1-204ENST00000471488 VAMP3Q15836 100 aa3.71□□□□□ -1.82
HDAC1-204ENST00000471488 SSBP3-AS1Q7Z2R9 100 aa3.71□□□□□ -1.82
HDAC1-204ENST00000471488 SIGMAR1Q99720 223 aa3.71□□□□□ -1.82
HDAC1-204ENST00000471488 LAMTOR2Q9Y2Q5 125 aa3.71□□□□□ -1.82
HDAC1-204ENST00000471488 PRYO14603 147 aa3.7□□□□□ -1.82
HDAC1-204ENST00000471488 RPS29P62273 56 aaKnown RBP3.7□□□□□ -1.82
HDAC1-204ENST00000471488 PMVKQ15126 192 aa3.7□□□□□ -1.82
HDAC1-204ENST00000471488 TOMM6Q96B49 74 aa3.7□□□□□ -1.82
HDAC1-204ENST00000471488 NXT2Q9NPJ8 142 aaKnown RBP3.7□□□□□ -1.82
HDAC1-204ENST00000471488 SSPOA2VEC9 5147 aa3.7□□□□□ -1.82
HDAC1-204ENST00000471488 ERC2-IT1O76042 136 aa3.69□□□□□ -1.82
HDAC1-204ENST00000471488 ERASQ7Z444 233 aa3.69□□□□□ -1.82
HDAC1-204ENST00000471488 MRPL18Q9H0U6 180 aaKnown RBP3.69□□□□□ -1.82
HDAC1-204ENST00000471488 SS18L2Q9UHA2 77 aa3.69□□□□□ -1.82
HDAC1-204ENST00000471488 IGLV5-45A0A087WSX0 123 aa3.68□□□□□ -1.82
HDAC1-204ENST00000471488 C9JQL5 133 aa3.68□□□□□ -1.82
HDAC1-204ENST00000471488 TRGC2P03986 189 aa3.68□□□□□ -1.82
HDAC1-204ENST00000471488 COX17Q14061 63 aa3.68□□□□□ -1.82
HDAC1-204ENST00000471488 KIAA1644Q3SXP7 199 aa3.68□□□□□ -1.82
HDAC1-204ENST00000471488 LINC00483Q53H64 154 aa3.68□□□□□ -1.82
HDAC1-204ENST00000471488 ATP5L2Q7Z4Y8 100 aa3.68□□□□□ -1.82
HDAC1-204ENST00000471488 LIMD2Q9BT23 127 aa3.68□□□□□ -1.82
HDAC1-204ENST00000471488 FCGBPQ9Y6R7 5405 aaPredicted RBP3.68□□□□□ -1.82
HDAC1-204ENST00000471488 FLGP20930 4061 aaPredicted RBP3.67□□□□□ -1.82
HDAC1-204ENST00000471488 K7EMI3 77 aa3.67□□□□□ -1.82
HDAC1-204ENST00000471488 BATFQ16520 125 aa3.67□□□□□ -1.82
HDAC1-204ENST00000471488 MEIG1Q5JSS6 88 aa3.67□□□□□ -1.82
HDAC1-204ENST00000471488 SMIM20Q8N5G0 67 aa3.67□□□□□ -1.82
HDAC1-204ENST00000471488 UQCR10Q9UDW1 63 aa3.67□□□□□ -1.82
HDAC1-204ENST00000471488 TRAV9-1A0A075B6T8 112 aa3.66□□□□□ -1.82
HDAC1-204ENST00000471488 TRBV10-3A0A0K0K1G6 114 aa3.66□□□□□ -1.82
HDAC1-204ENST00000471488 H7C2G1 150 aa3.66□□□□□ -1.82
HDAC1-204ENST00000471488 TMEM170BQ5T4T1 132 aa3.66□□□□□ -1.82
HDAC1-204ENST00000471488 SYNE2Q8WXH0 6885 aaKnown RBP3.66□□□□□ -1.82
HDAC1-204ENST00000471488 B5MCH6 92 aa3.65□□□□□ -1.83
HDAC1-204ENST00000471488 CFC1P0CG37 223 aa3.65□□□□□ -1.83
HDAC1-204ENST00000471488 SMIM13P0DJ93 91 aa3.65□□□□□ -1.83
HDAC1-204ENST00000471488 HSD52Q0P140 79 aa3.65□□□□□ -1.83
HDAC1-204ENST00000471488 KRTAP19-1Q8IUB9 90 aa3.65□□□□□ -1.83
HDAC1-204ENST00000471488 VAMP8Q9BV40 100 aa3.65□□□□□ -1.83
HDAC1-204ENST00000471488 HSPB8Q9UJY1 196 aa3.65□□□□□ -1.83
HDAC1-204ENST00000471488 IGLV5-39A0A0G2JS06 123 aa3.64□□□□□ -1.83
HDAC1-204ENST00000471488 TAX1BP3O14907 124 aa3.64□□□□□ -1.83
HDAC1-204ENST00000471488 IGLC3P0DOY3 106 aa3.64□□□□□ -1.83
HDAC1-204ENST00000471488 ZNF22P17026 224 aaPredicted RBP3.64□□□□□ -1.83
HDAC1-204ENST00000471488 FA2HQ7L5A8 372 aa3.64□□□□□ -1.83
HDAC1-204ENST00000471488 ST20-AS1Q8NBB2 130 aa3.64□□□□□ -1.83
HDAC1-204ENST00000471488 Q9BRP9 147 aa3.64□□□□□ -1.83
HDAC1-204ENST00000471488 KCNQ1DNQ9H478 68 aa3.64□□□□□ -1.83
HDAC1-204ENST00000471488 SPRR1AP35321 89 aa3.63□□□□□ -1.83
HDAC1-204ENST00000471488 RPL37P61927 97 aaKnown RBP3.63□□□□□ -1.83
HDAC1-204ENST00000471488 MIR7-3HGQ8N6C7 128 aa3.63□□□□□ -1.83
HDAC1-204ENST00000471488 MAP1LC3CQ9BXW4 147 aa3.63□□□□□ -1.83
HDAC1-204ENST00000471488 MACF1Q9UPN3 7388 aaKnown RBP3.63□□□□□ -1.83
HDAC1-204ENST00000471488 S100A7L2Q5SY68 101 aa3.62□□□□□ -1.83
HDAC1-204ENST00000471488 SFTA2Q6UW10 78 aa3.62□□□□□ -1.83
HDAC1-204ENST00000471488 Q6ZRX8 168 aa3.62□□□□□ -1.83
HDAC1-204ENST00000471488 GTF2H5Q6ZYL4 71 aa3.62□□□□□ -1.83
HDAC1-204ENST00000471488 LINC01549A6NIU2 74 aa3.61□□□□□ -1.83
HDAC1-204ENST00000471488 J3QR89 54 aa3.61□□□□□ -1.83
HDAC1-204ENST00000471488 SEC61GP60059 68 aa3.61□□□□□ -1.83
HDAC1-204ENST00000471488 Q6ZVH6 145 aa3.61□□□□□ -1.83
HDAC1-204ENST00000471488 C11orf86A6NJI1 115 aa3.6□□□□□ -1.83
HDAC1-204ENST00000471488 K7EP34 96 aa3.6□□□□□ -1.83
HDAC1-204ENST00000471488 HINT1P49773 126 aaPredicted RBP3.6□□□□□ -1.83
HDAC1-204ENST00000471488 BAGE3Q86Y29 109 aa3.6□□□□□ -1.83
HDAC1-204ENST00000471488 DEFB105AQ8NG35 78 aa3.6□□□□□ -1.83
HDAC1-204ENST00000471488 PAM16Q9Y3D7 125 aa3.6□□□□□ -1.83
HDAC1-204ENST00000471488 PMCHL1Q16048 86 aa3.59□□□□□ -1.83
HDAC1-204ENST00000471488 Q1RN00 199 aa3.59□□□□□ -1.83
HDAC1-204ENST00000471488 SPATA45Q537H7 98 aa3.59□□□□□ -1.83
HDAC1-204ENST00000471488 LAMTOR3Q9UHA4 124 aa3.59□□□□□ -1.83
HDAC1-204ENST00000471488 TRAV23DV6A0A075B6W5 121 aa3.58□□□□□ -1.84
HDAC1-204ENST00000471488 BVES-AS1Q5T3Y7 98 aa3.58□□□□□ -1.84
HDAC1-204ENST00000471488 SLC25A34Q6PIV7 304 aa3.58□□□□□ -1.84
HDAC1-204ENST00000471488 ATP11AUNQ6ZP68 121 aa3.58□□□□□ -1.84
HDAC1-204ENST00000471488 ANAPC13Q9BS18 74 aa3.58□□□□□ -1.84
HDAC1-204ENST00000471488 KRTAP9-8Q9BYQ0 159 aa3.58□□□□□ -1.84
HDAC1-204ENST00000471488 SPANXCQ9NY87 97 aa3.58□□□□□ -1.84
HDAC1-204ENST00000471488 A0A1B0GX51 115 aa3.57□□□□□ -1.84
HDAC1-204ENST00000471488 NPC2P61916 151 aa3.57□□□□□ -1.84
HDAC1-204ENST00000471488 PCP2Q8IVA1 136 aa3.57□□□□□ -1.84
HDAC1-204ENST00000471488 LINC00846Q9NV44 126 aa3.57□□□□□ -1.84
HDAC1-204ENST00000471488 A0A0G2JQZ4 141 aa3.56□□□□□ -1.84
HDAC1-204ENST00000471488 A6NDN8 102 aa3.56□□□□□ -1.84
HDAC1-204ENST00000471488 C9orf118A6NHY6 69 aa3.56□□□□□ -1.84
HDAC1-204ENST00000471488 ZNF73O43830 326 aaPredicted RBP3.56□□□□□ -1.84
HDAC1-204ENST00000471488 KRTAP10-10P60014 251 aa3.56□□□□□ -1.84
HDAC1-204ENST00000471488 RPS28P62857 69 aaKnown RBP3.56□□□□□ -1.84
HDAC1-204ENST00000471488 TAL2Q16559 108 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 155.2 ms