RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 WIPF1O43516 503 aa12.58□□□□□ -0.4
CCDC88B-204ENST00000463837 C8orf87E5RJ46 101 aa12.58□□□□□ -0.4
CCDC88B-204ENST00000463837 Q8N377 158 aa12.57□□□□□ -0.4
CCDC88B-204ENST00000463837 IGLV8-61A0A075B6I0 122 aa12.56□□□□□ -0.4
CCDC88B-204ENST00000463837 LINC00313P59037 77 aa12.56□□□□□ -0.4
CCDC88B-204ENST00000463837 C19orf73Q9NVV2 129 aa12.56□□□□□ -0.4
CCDC88B-204ENST00000463837 CEP350Q5VT06 3117 aa12.56□□□□□ -0.4
CCDC88B-204ENST00000463837 CHTF8P0CG12 524 aa12.55□□□□□ -0.4
CCDC88B-204ENST00000463837 IGFL1Q6UW32 110 aa12.55□□□□□ -0.4
CCDC88B-204ENST00000463837 PRR15Q8IV56 129 aa12.55□□□□□ -0.4
CCDC88B-204ENST00000463837 MRPL34Q9BQ48 92 aaKnown RBP12.55□□□□□ -0.4
CCDC88B-204ENST00000463837 C15orf56Q8N910 161 aa12.55□□□□□ -0.4
CCDC88B-204ENST00000463837 TLX1NBP0CAT3 122 aa12.55□□□□□ -0.4
CCDC88B-204ENST00000463837 A0A096LNT2 108 aa12.54□□□□□ -0.4
CCDC88B-204ENST00000463837 CD164Q04900 197 aa12.52□□□□□ -0.41
CCDC88B-204ENST00000463837 TYMSOSQ8TAI1 123 aa12.51□□□□□ -0.41
CCDC88B-204ENST00000463837 PLA2G1BP04054 148 aaKnown RBP12.47□□□□□ -0.41
CCDC88B-204ENST00000463837 A0A0G2JQZ4 141 aa12.45□□□□□ -0.42
CCDC88B-204ENST00000463837 A0A1W2PNN7 141 aa12.45□□□□□ -0.42
CCDC88B-204ENST00000463837 SPANXA2-OT1Q8N9U9 137 aa12.45□□□□□ -0.42
CCDC88B-204ENST00000463837 C8orf17Q9NRJ1 99 aa12.45□□□□□ -0.42
CCDC88B-204ENST00000463837 IGLV5-48A0A075B6I7 105 aa12.4□□□□□ -0.42
CCDC88B-204ENST00000463837 FAM104AQ969W3 186 aa12.4□□□□□ -0.42
CCDC88B-204ENST00000463837 UQCR11O14957 56 aa12.39□□□□□ -0.43
CCDC88B-204ENST00000463837 K7EIL1 84 aa12.39□□□□□ -0.43
CCDC88B-204ENST00000463837 A0A1B0GVX0 72 aa12.39□□□□□ -0.43
CCDC88B-204ENST00000463837 A0A1W2PNM2 257 aa12.39□□□□□ -0.43
CCDC88B-204ENST00000463837 J3QL48 77 aa12.35□□□□□ -0.43
CCDC88B-204ENST00000463837 MGAM2Q2M2H8 2515 aa12.35□□□□□ -0.43
CCDC88B-204ENST00000463837 OCR1Q9BZK8 76 aa12.34□□□□□ -0.43
CCDC88B-204ENST00000463837 IGLV5-37A0A075B6J1 123 aa12.34□□□□□ -0.43
CCDC88B-204ENST00000463837 Q96NJ1 140 aa12.34□□□□□ -0.43
CCDC88B-204ENST00000463837 HECTD1Q9ULT8 2610 aa12.34□□□□□ -0.43
CCDC88B-204ENST00000463837 KTN1-AS1Q86SY8 53 aa12.33□□□□□ -0.44
CCDC88B-204ENST00000463837 KRTAP10-11P60412 298 aa12.32□□□□□ -0.44
CCDC88B-204ENST00000463837 USP24Q9UPU5 2620 aa12.3□□□□□ -0.44
CCDC88B-204ENST00000463837 SSBP3-AS1Q7Z2R9 100 aa12.3□□□□□ -0.44
CCDC88B-204ENST00000463837 Q1T7F1 81 aa12.3□□□□□ -0.44
CCDC88B-204ENST00000463837 DSCR10P59022 87 aa12.27□□□□□ -0.44
CCDC88B-204ENST00000463837 SPINT4Q6UDR6 99 aa12.27□□□□□ -0.44
CCDC88B-204ENST00000463837 MIR22HGQ0VDD5 57 aa12.26□□□□□ -0.45
CCDC88B-204ENST00000463837 PCNTO95613 3336 aa12.26□□□□□ -0.45
CCDC88B-204ENST00000463837 ZNF861PO60384 105 aa12.25□□□□□ -0.45
CCDC88B-204ENST00000463837 KRTAP10-3P60369 221 aa12.25□□□□□ -0.45
CCDC88B-204ENST00000463837 C9orf163Q8N9P6 203 aa12.24□□□□□ -0.45
CCDC88B-204ENST00000463837 CNBPP62633 177 aaKnown RBP12.24□□□□□ -0.45
CCDC88B-204ENST00000463837 SPRR4Q96PI1 79 aa12.23□□□□□ -0.45
CCDC88B-204ENST00000463837 BPTFQ12830 3046 aa12.23□□□□□ -0.45
CCDC88B-204ENST00000463837 CDC42SE1Q9NRR8 79 aa12.23□□□□□ -0.45
CCDC88B-204ENST00000463837 LCA10Q71F78 164 aa12.22□□□□□ -0.45
CCDC88B-204ENST00000463837 A0A087WTM6 91 aa12.19□□□□□ -0.46
CCDC88B-204ENST00000463837 Q5XG85 94 aa12.16□□□□□ -0.46
CCDC88B-204ENST00000463837 CASC10Q5T4H9 136 aa12.15□□□□□ -0.46
CCDC88B-204ENST00000463837 LINC00304Q8N9R0 145 aa12.15□□□□□ -0.46
CCDC88B-204ENST00000463837 ANAPC11Q9NYG5 84 aa12.15□□□□□ -0.46
CCDC88B-204ENST00000463837 CHD7Q9P2D1 2997 aa12.14□□□□□ -0.47
CCDC88B-204ENST00000463837 KRTAP1-3Q8IUG1 177 aa12.14□□□□□ -0.47
CCDC88B-204ENST00000463837 MAST4O15021 2626 aa12.12□□□□□ -0.47
CCDC88B-204ENST00000463837 CYSTM1Q9H1C7 97 aa12.1□□□□□ -0.47
CCDC88B-204ENST00000463837 COX6B2Q6YFQ2 88 aa12.1□□□□□ -0.47
CCDC88B-204ENST00000463837 ATRQ13535 2644 aa12.08□□□□□ -0.48
CCDC88B-204ENST00000463837 IGLV7-46A0A075B6I9 117 aa12.07□□□□□ -0.48
CCDC88B-204ENST00000463837 C5orf42Q9H799 3197 aa12.07□□□□□ -0.48
CCDC88B-204ENST00000463837 APLNQ9ULZ1 77 aa12.06□□□□□ -0.48
CCDC88B-204ENST00000463837 A0A0C4DFX4 3053 aa12.06□□□□□ -0.48
CCDC88B-204ENST00000463837 IGLV7-43P04211 117 aa12.05□□□□□ -0.48
CCDC88B-204ENST00000463837 KRTAP1-1Q07627 177 aa12.05□□□□□ -0.48
CCDC88B-204ENST00000463837 Q75L30 129 aa12.04□□□□□ -0.48
CCDC88B-204ENST00000463837 CR1P17927 2039 aa12.03□□□□□ -0.48
CCDC88B-204ENST00000463837 PSORS1C2Q9UIG4 136 aa12.02□□□□□ -0.48
CCDC88B-204ENST00000463837 PRR26Q8N8Z3 221 aa12.02□□□□□ -0.49
CCDC88B-204ENST00000463837 FP248Q71RG6 208 aaPredicted RBP12.01□□□□□ -0.49
CCDC88B-204ENST00000463837 SMR3BP02814 79 aaPredicted RBP12□□□□□ -0.49
CCDC88B-204ENST00000463837 HTTP42858 3142 aa12□□□□□ -0.49
CCDC88B-204ENST00000463837 FAM229BQ4G0N7 80 aa12□□□□□ -0.49
CCDC88B-204ENST00000463837 RANBP2P49792 3224 aaKnown RBP11.99□□□□□ -0.49
CCDC88B-204ENST00000463837 RBM12B-AS1Q9P1G2 102 aa11.99□□□□□ -0.49
CCDC88B-204ENST00000463837 CRIPTQ9P021 101 aa11.98□□□□□ -0.49
CCDC88B-204ENST00000463837 SPRR1AP35321 89 aa11.97□□□□□ -0.49
CCDC88B-204ENST00000463837 C9orf92A6NGG3 77 aa11.97□□□□□ -0.49
CCDC88B-204ENST00000463837 Q8NDZ9 215 aa11.97□□□□□ -0.49
CCDC88B-204ENST00000463837 HELZ2Q9BYK8 2649 aaKnown RBP11.96□□□□□ -0.49
CCDC88B-204ENST00000463837 CHD9Q3L8U1 2897 aa11.94□□□□□ -0.5
CCDC88B-204ENST00000463837 Q8N1X5 172 aa11.93□□□□□ -0.5
CCDC88B-204ENST00000463837 LINC01558Q9Y6Z2 57 aa11.93□□□□□ -0.5
CCDC88B-204ENST00000463837 Q8N9P0 234 aaPredicted RBP11.92□□□□□ -0.5
CCDC88B-204ENST00000463837 FLNAP21333 2647 aaKnown RBP11.9□□□□□ -0.5
CCDC88B-204ENST00000463837 CFAP54Q96N23 3096 aa11.89□□□□□ -0.51
CCDC88B-204ENST00000463837 MMP24-AS1A0A0U1RRL7 71 aa11.88□□□□□ -0.51
CCDC88B-204ENST00000463837 OXTP01178 125 aa11.88□□□□□ -0.51
CCDC88B-204ENST00000463837 H3BS24 57 aa11.86□□□□□ -0.51
CCDC88B-204ENST00000463837 ITPR3Q14573 2671 aa11.84□□□□□ -0.51
CCDC88B-204ENST00000463837 SPRR1BP22528 89 aa11.83□□□□□ -0.51
CCDC88B-204ENST00000463837 A0A0D9SG42 100 aa11.82□□□□□ -0.52
CCDC88B-204ENST00000463837 HRES1P13985 223 aa11.8□□□□□ -0.52
CCDC88B-204ENST00000463837 Q5VV11 94 aa11.79□□□□□ -0.52
CCDC88B-204ENST00000463837 LAMA3Q16787 3333 aa11.79□□□□□ -0.52
CCDC88B-204ENST00000463837 MKI67P46013 3256 aaKnown RBP11.78□□□□□ -0.52
CCDC88B-204ENST00000463837 CENPEQ02224 2701 aa11.78□□□□□ -0.52
CCDC88B-204ENST00000463837 LINC00472Q9H8W2 130 aa11.77□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 106.5 ms