RNA–Protein interactions for RNA: ENST00000455727.6

LDLR-202, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,333 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-202ENST00000455727 CASC10Q5T4H9 136 aa9.79□□□□□ -0.84
LDLR-202ENST00000455727 COX7CP15954 63 aa9.79□□□□□ -0.84
LDLR-202ENST00000455727 C7orf33Q8WU49 177 aa9.79□□□□□ -0.84
LDLR-202ENST00000455727 TRBV7-4A0A0J9YYF1 115 aa9.78□□□□□ -0.84
LDLR-202ENST00000455727 SMIM20Q8N5G0 67 aa9.78□□□□□ -0.84
LDLR-202ENST00000455727 M0R2N4 97 aa9.74□□□□□ -0.85
LDLR-202ENST00000455727 IGLV1-50A0A075B6I6 118 aa9.73□□□□□ -0.85
LDLR-202ENST00000455727 A0A087WVE0 104 aa9.73□□□□□ -0.85
LDLR-202ENST00000455727 PRYO14603 147 aa9.73□□□□□ -0.85
LDLR-202ENST00000455727 LOC107984640A0A0U1RRK4 108 aa9.73□□□□□ -0.85
LDLR-202ENST00000455727 KRTAP4-16G5E9R7 235 aaPredicted RBP9.72□□□□□ -0.85
LDLR-202ENST00000455727 CRYGAP11844 174 aa9.72□□□□□ -0.85
LDLR-202ENST00000455727 SPRR1AP35321 89 aa9.72□□□□□ -0.85
LDLR-202ENST00000455727 MGAM2Q2M2H8 2515 aa9.72□□□□□ -0.85
LDLR-202ENST00000455727 Q6ZVQ6 151 aa9.71□□□□□ -0.85
LDLR-202ENST00000455727 KRTAP7-1Q8IUC3 87 aa9.71□□□□□ -0.85
LDLR-202ENST00000455727 DHRS4-AS1Q9P1J3 65 aa9.71□□□□□ -0.85
LDLR-202ENST00000455727 FAM168BA1KXE4 195 aa9.71□□□□□ -0.86
LDLR-202ENST00000455727 Q6ZRX8 168 aa9.7□□□□□ -0.86
LDLR-202ENST00000455727 SERP2Q8N6R1 65 aa9.69□□□□□ -0.86
LDLR-202ENST00000455727 RPL37AP8A6NKH3 93 aa9.68□□□□□ -0.86
LDLR-202ENST00000455727 LINC01547P58512 204 aaPredicted RBP9.68□□□□□ -0.86
LDLR-202ENST00000455727 FAM19A1Q7Z5A9 133 aa9.68□□□□□ -0.86
LDLR-202ENST00000455727 MRPL55Q7Z7F7 128 aaKnown RBP9.68□□□□□ -0.86
LDLR-202ENST00000455727 APLNQ9ULZ1 77 aa9.68□□□□□ -0.86
LDLR-202ENST00000455727 DNAH9Q9NYC9 4486 aa9.67□□□□□ -0.86
LDLR-202ENST00000455727 CXCL6P80162 114 aa9.67□□□□□ -0.86
LDLR-202ENST00000455727 Q8N377 158 aa9.67□□□□□ -0.86
LDLR-202ENST00000455727 KRTAP1-5Q9BYS1 174 aa9.67□□□□□ -0.86
LDLR-202ENST00000455727 COL7A1Q02388 2944 aa9.67□□□□□ -0.86
LDLR-202ENST00000455727 ETDCA0A1B0GVM5 59 aa9.66□□□□□ -0.86
LDLR-202ENST00000455727 CNBPP62633 177 aaKnown RBP9.66□□□□□ -0.86
LDLR-202ENST00000455727 B9D2Q9BPU9 175 aa9.66□□□□□ -0.86
LDLR-202ENST00000455727 Q9BRP9 147 aa9.66□□□□□ -0.86
LDLR-202ENST00000455727 HAMPP81172 84 aa9.65□□□□□ -0.86
LDLR-202ENST00000455727 IGLV5-48A0A075B6I7 105 aa9.65□□□□□ -0.87
LDLR-202ENST00000455727 FAM19A5Q7Z5A7 132 aaPredicted RBP9.65□□□□□ -0.87
LDLR-202ENST00000455727 STAB2Q8WWQ8 2551 aa9.64□□□□□ -0.87
LDLR-202ENST00000455727 DYNC2H1Q8NCM8 4307 aaKnown RBP9.64□□□□□ -0.87
LDLR-202ENST00000455727 UBE2DNLQ8IWF7 75 aa9.64□□□□□ -0.87
LDLR-202ENST00000455727 C16orf90A8MZG2 172 aa9.62□□□□□ -0.87
LDLR-202ENST00000455727 DEFB105AQ8NG35 78 aa9.62□□□□□ -0.87
LDLR-202ENST00000455727 MDFIQ99750 246 aa9.62□□□□□ -0.87
LDLR-202ENST00000455727 PSCAO43653 123 aa9.62□□□□□ -0.87
LDLR-202ENST00000455727 BCE1O60756 84 aa9.62□□□□□ -0.87
LDLR-202ENST00000455727 CYSTM1Q9H1C7 97 aa9.62□□□□□ -0.87
LDLR-202ENST00000455727 C14orf177Q52M58 125 aa9.61□□□□□ -0.87
LDLR-202ENST00000455727 REG3GQ6UW15 175 aa9.6□□□□□ -0.87
LDLR-202ENST00000455727 A0A1B0GW54 56 aa9.6□□□□□ -0.87
LDLR-202ENST00000455727 A0A096LNI7 61 aa9.59□□□□□ -0.87
LDLR-202ENST00000455727 TNP2Q05952 138 aa9.58□□□□□ -0.88
LDLR-202ENST00000455727 DNAH10Q8IVF4 4471 aa9.57□□□□□ -0.88
LDLR-202ENST00000455727 LYSTQ99698 3801 aa9.57□□□□□ -0.88
LDLR-202ENST00000455727 TMEM258P61165 79 aa9.56□□□□□ -0.88
LDLR-202ENST00000455727 ST20-AS1Q8NBB2 130 aa9.56□□□□□ -0.88
LDLR-202ENST00000455727 J3KT08 172 aa9.56□□□□□ -0.88
LDLR-202ENST00000455727 UBE2BP63146 152 aa9.56□□□□□ -0.88
LDLR-202ENST00000455727 ERC2-IT1O76042 136 aa9.55□□□□□ -0.88
LDLR-202ENST00000455727 NUPR2A6NF83 97 aa9.55□□□□□ -0.88
LDLR-202ENST00000455727 RPS28P62857 69 aaKnown RBP9.55□□□□□ -0.88
LDLR-202ENST00000455727 A0A1W2PNN7 141 aa9.54□□□□□ -0.88
LDLR-202ENST00000455727 NREPQ16612 68 aa9.54□□□□□ -0.88
LDLR-202ENST00000455727 FUSP35637 526 aaKnown RBP eCLIP9.54□□□□□ -0.88
LDLR-202ENST00000455727 IGKV2-24A0A0C4DH68 120 aa9.53□□□□□ -0.88
LDLR-202ENST00000455727 NBDYA0A0U1RRE5 68 aa9.52□□□□□ -0.89
LDLR-202ENST00000455727 C1orf137Q5JT78 98 aa9.52□□□□□ -0.89
LDLR-202ENST00000455727 PKIGQ9Y2B9 76 aa9.52□□□□□ -0.89
LDLR-202ENST00000455727 TRAV7A0A075B6U4 112 aa9.51□□□□□ -0.89
LDLR-202ENST00000455727 SCXQ7RTU7 201 aa9.51□□□□□ -0.89
LDLR-202ENST00000455727 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.51□□□□□ -0.89
LDLR-202ENST00000455727 A0A1W2PNM2 257 aa9.51□□□□□ -0.89
LDLR-202ENST00000455727 LRCOL1A6NCL2 159 aa9.51□□□□□ -0.89
LDLR-202ENST00000455727 C3orf84H3BNL1 204 aa9.5□□□□□ -0.89
LDLR-202ENST00000455727 C9orf163Q8N9P6 203 aa9.5□□□□□ -0.89
LDLR-202ENST00000455727 CSMD3Q7Z407 3707 aa9.5□□□□□ -0.89
LDLR-202ENST00000455727 Q8NBF4 154 aa9.5□□□□□ -0.89
LDLR-202ENST00000455727 DPH3Q96FX2 82 aa9.5□□□□□ -0.89
LDLR-202ENST00000455727 SMIM29Q86T20 159 aa9.49□□□□□ -0.89
LDLR-202ENST00000455727 SPRR4Q96PI1 79 aa9.49□□□□□ -0.89
LDLR-202ENST00000455727 BPY2O14599 106 aa9.48□□□□□ -0.89
LDLR-202ENST00000455727 PLECQ15149 4684 aaKnown RBP9.47□□□□□ -0.89
LDLR-202ENST00000455727 DNAH7Q8WXX0 4024 aa9.47□□□□□ -0.89
LDLR-202ENST00000455727 Q6ZRN7 208 aaPredicted RBP9.47□□□□□ -0.89
LDLR-202ENST00000455727 C20orf197Q8N268 126 aa9.47□□□□□ -0.89
LDLR-202ENST00000455727 H0Y9J4 135 aa9.46□□□□□ -0.9
LDLR-202ENST00000455727 IGKV4-1P06312 121 aa9.46□□□□□ -0.9
LDLR-202ENST00000455727 TENM2Q9NT68 2774 aa9.46□□□□□ -0.9
LDLR-202ENST00000455727 PRLHP81277 87 aa9.45□□□□□ -0.9
LDLR-202ENST00000455727 LINC00474Q9P2X8 69 aa9.45□□□□□ -0.9
LDLR-202ENST00000455727 CHTF8P0CG12 524 aa9.45□□□□□ -0.9
LDLR-202ENST00000455727 F8WEM9 126 aa9.44□□□□□ -0.9
LDLR-202ENST00000455727 IGLV8-61A0A075B6I0 122 aa9.43□□□□□ -0.9
LDLR-202ENST00000455727 PHF5AQ7RTV0 110 aaKnown RBP9.43□□□□□ -0.9
LDLR-202ENST00000455727 LINC00476Q8WZB0 136 aa9.43□□□□□ -0.9
LDLR-202ENST00000455727 KRTAP11-1Q8IUC1 163 aa9.42□□□□□ -0.9
LDLR-202ENST00000455727 Q8N9L7 120 aa9.42□□□□□ -0.9
LDLR-202ENST00000455727 HIGD2AQ9BW72 106 aa9.42□□□□□ -0.9
LDLR-202ENST00000455727 VPS13DQ5THJ4 4388 aa9.4□□□□□ -0.9
LDLR-202ENST00000455727 OXTP01178 125 aa9.39□□□□□ -0.91
LDLR-202ENST00000455727 KLKP1Q107X0 134 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 98.7 ms