RNA–Protein interactions for RNA: ENST00000436346.5

CCDC88A-207, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CCDC88A, Length 9,811 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-207ENST00000436346 Q8NAQ8 132 aa8.25□□□□□ -1.09
CCDC88A-207ENST00000436346 Q96NJ1 140 aa8.25□□□□□ -1.09
CCDC88A-207ENST00000436346 FAM19A4Q96LR4 140 aa8.25□□□□□ -1.09
CCDC88A-207ENST00000436346 BRCA2P51587 3418 aa8.25□□□□□ -1.09
CCDC88A-207ENST00000436346 IGLV8-61A0A075B6I0 122 aa8.25□□□□□ -1.09
CCDC88A-207ENST00000436346 RANBP2P49792 3224 aaKnown RBP8.24□□□□□ -1.09
CCDC88A-207ENST00000436346 SPAG11AQ6PDA7 123 aa8.24□□□□□ -1.09
CCDC88A-207ENST00000436346 WWC2-AS2Q96NR7 200 aa8.24□□□□□ -1.09
CCDC88A-207ENST00000436346 ELOF1P60002 83 aaKnown RBP8.24□□□□□ -1.09
CCDC88A-207ENST00000436346 GVQW2A0A096LPI5 108 aaPredicted RBP8.23□□□□□ -1.09
CCDC88A-207ENST00000436346 IGSF10Q6WRI0 2623 aa8.23□□□□□ -1.09
CCDC88A-207ENST00000436346 COX6B2Q6YFQ2 88 aa8.22□□□□□ -1.09
CCDC88A-207ENST00000436346 LINC00476Q8WZB0 136 aa8.22□□□□□ -1.09
CCDC88A-207ENST00000436346 TRAV22A0A0B4J277 110 aa8.22□□□□□ -1.09
CCDC88A-207ENST00000436346 NBEAL2Q6ZNJ1 2754 aa8.21□□□□□ -1.09
CCDC88A-207ENST00000436346 BCE1O60756 84 aa8.2□□□□□ -1.1
CCDC88A-207ENST00000436346 DNAH10OSP0CZ25 163 aa8.2□□□□□ -1.1
CCDC88A-207ENST00000436346 LRBAP50851 2863 aa8.18□□□□□ -1.1
CCDC88A-207ENST00000436346 FAM218AQ96MZ4 157 aa8.18□□□□□ -1.1
CCDC88A-207ENST00000436346 IGLV5-45A0A087WSX0 123 aa8.17□□□□□ -1.1
CCDC88A-207ENST00000436346 LAMA3Q16787 3333 aa8.17□□□□□ -1.1
CCDC88A-207ENST00000436346 ST20-AS1Q8NBB2 130 aa8.16□□□□□ -1.1
CCDC88A-207ENST00000436346 KRTAP10-11P60412 298 aa8.15□□□□□ -1.1
CCDC88A-207ENST00000436346 FRYQ5TBA9 3013 aa8.15□□□□□ -1.1
CCDC88A-207ENST00000436346 Q6ZQT0 140 aa8.15□□□□□ -1.1
CCDC88A-207ENST00000436346 LOC110117498A0A087WWA1 95 aa8.14□□□□□ -1.11
CCDC88A-207ENST00000436346 A0A1B0GW54 56 aa8.13□□□□□ -1.11
CCDC88A-207ENST00000436346 LINC00304Q8N9R0 145 aa8.12□□□□□ -1.11
CCDC88A-207ENST00000436346 C9orf92A6NGG3 77 aa8.12□□□□□ -1.11
CCDC88A-207ENST00000436346 OBSCN-AS1Q96MR7 158 aa8.11□□□□□ -1.11
CCDC88A-207ENST00000436346 FLNCQ14315 2725 aa8.1□□□□□ -1.11
CCDC88A-207ENST00000436346 USP34Q70CQ2 3546 aa8.09□□□□□ -1.11
CCDC88A-207ENST00000436346 WDFY4Q6ZS81 3184 aa8.09□□□□□ -1.11
CCDC88A-207ENST00000436346 K7EIL1 84 aa8.09□□□□□ -1.11
CCDC88A-207ENST00000436346 IGLV6-57P01721 117 aa8.09□□□□□ -1.11
CCDC88A-207ENST00000436346 CDIP1Q9H305 208 aa8.09□□□□□ -1.11
CCDC88A-207ENST00000436346 A8MWP4 228 aa8.08□□□□□ -1.12
CCDC88A-207ENST00000436346 SERTAD4-AS1Q5TG53 156 aa8.08□□□□□ -1.12
CCDC88A-207ENST00000436346 NSD1Q96L73 2696 aaPredicted RBP8.07□□□□□ -1.12
CCDC88A-207ENST00000436346 CHD9Q3L8U1 2897 aa8.06□□□□□ -1.12
CCDC88A-207ENST00000436346 UBR5O95071 2799 aaPredicted RBP8.06□□□□□ -1.12
CCDC88A-207ENST00000436346 ITPR1Q14643 2758 aa8.06□□□□□ -1.12
CCDC88A-207ENST00000436346 TRBV7-4A0A0J9YYF1 115 aa8.06□□□□□ -1.12
CCDC88A-207ENST00000436346 DNAH14Q0VDD8 3507 aa8.05□□□□□ -1.12
CCDC88A-207ENST00000436346 TM2D3Q9BRN9 247 aa8.05□□□□□ -1.12
CCDC88A-207ENST00000436346 CSNK1G2-AS1Q8NCQ2 148 aa8.05□□□□□ -1.12
CCDC88A-207ENST00000436346 SMR3BP02814 79 aaPredicted RBP8.05□□□□□ -1.12
CCDC88A-207ENST00000436346 CELSR3Q9NYQ7 3312 aa8.04□□□□□ -1.12
CCDC88A-207ENST00000436346 H3BPC8 53 aa8.04□□□□□ -1.12
CCDC88A-207ENST00000436346 SPINT4Q6UDR6 99 aa8.04□□□□□ -1.12
CCDC88A-207ENST00000436346 LOC101927531A0A1B0GV80 90 aa8.03□□□□□ -1.12
CCDC88A-207ENST00000436346 DSCR10P59022 87 aa8.02□□□□□ -1.12
CCDC88A-207ENST00000436346 K7EQZ3 153 aa8.02□□□□□ -1.13
CCDC88A-207ENST00000436346 KALRNO60229 2985 aa8.02□□□□□ -1.13
CCDC88A-207ENST00000436346 CDH23Q9H251 3354 aa8.02□□□□□ -1.13
CCDC88A-207ENST00000436346 CRYBG3Q68DQ2 2970 aa8.02□□□□□ -1.13
CCDC88A-207ENST00000436346 SSBP3-AS1Q7Z2R9 100 aa8.01□□□□□ -1.13
CCDC88A-207ENST00000436346 APLNQ9ULZ1 77 aa8.01□□□□□ -1.13
CCDC88A-207ENST00000436346 C8orf87E5RJ46 101 aa8□□□□□ -1.13
CCDC88A-207ENST00000436346 C15orf56Q8N910 161 aa7.99□□□□□ -1.13
CCDC88A-207ENST00000436346 VPREB1P12018 145 aa7.99□□□□□ -1.13
CCDC88A-207ENST00000436346 LINC01600Q96MT4 127 aa7.98□□□□□ -1.13
CCDC88A-207ENST00000436346 LAMA1P25391 3075 aa7.98□□□□□ -1.13
CCDC88A-207ENST00000436346 ZNF861PO60384 105 aa7.98□□□□□ -1.13
CCDC88A-207ENST00000436346 TACC2O95359 2948 aa7.98□□□□□ -1.13
CCDC88A-207ENST00000436346 KCNQ1DNQ9H478 68 aa7.97□□□□□ -1.13
CCDC88A-207ENST00000436346 C4orf26Q17RF5 130 aa7.97□□□□□ -1.13
CCDC88A-207ENST00000436346 IGLV1-50A0A075B6I6 118 aa7.97□□□□□ -1.13
CCDC88A-207ENST00000436346 SMCPP49901 116 aaPredicted RBP7.96□□□□□ -1.13
CCDC88A-207ENST00000436346 A0A087WTM6 91 aa7.96□□□□□ -1.14
CCDC88A-207ENST00000436346 IGFL1Q6UW32 110 aa7.96□□□□□ -1.14
CCDC88A-207ENST00000436346 MRPL34Q9BQ48 92 aaKnown RBP7.96□□□□□ -1.14
CCDC88A-207ENST00000436346 HTTP42858 3142 aa7.95□□□□□ -1.14
CCDC88A-207ENST00000436346 PRO0628Q9UI54 55 aa7.95□□□□□ -1.14
CCDC88A-207ENST00000436346 ANAPC11Q9NYG5 84 aa7.94□□□□□ -1.14
CCDC88A-207ENST00000436346 COA5Q86WW8 74 aa7.94□□□□□ -1.14
CCDC88A-207ENST00000436346 C9orf129Q5T035 196 aaKnown RBP7.94□□□□□ -1.14
CCDC88A-207ENST00000436346 RBM12B-AS1Q9P1G2 102 aa7.93□□□□□ -1.14
CCDC88A-207ENST00000436346 A0A1B0GVX0 72 aa7.92□□□□□ -1.14
CCDC88A-207ENST00000436346 PRO0461Q9UI25 63 aa7.92□□□□□ -1.14
CCDC88A-207ENST00000436346 KRTAP10-3P60369 221 aa7.91□□□□□ -1.14
CCDC88A-207ENST00000436346 SPTBN5Q9NRC6 3674 aaKnown RBP7.91□□□□□ -1.14
CCDC88A-207ENST00000436346 LITAFQ99732 161 aa7.91□□□□□ -1.14
CCDC88A-207ENST00000436346 LINC01554Q52M75 96 aa7.91□□□□□ -1.14
CCDC88A-207ENST00000436346 C19orf73Q9NVV2 129 aa7.91□□□□□ -1.14
CCDC88A-207ENST00000436346 IGLV5-37A0A075B6J1 123 aa7.9□□□□□ -1.15
CCDC88A-207ENST00000436346 CRIPTQ9P021 101 aa7.9□□□□□ -1.15
CCDC88A-207ENST00000436346 LINC00336Q6ZUF6 198 aa7.89□□□□□ -1.15
CCDC88A-207ENST00000436346 PRR15Q8IV56 129 aa7.89□□□□□ -1.15
CCDC88A-207ENST00000436346 LINC00528Q8N1L1 170 aa7.89□□□□□ -1.15
CCDC88A-207ENST00000436346 A0A0G2JQZ4 141 aa7.89□□□□□ -1.15
CCDC88A-207ENST00000436346 A0A1W2PNN7 141 aa7.89□□□□□ -1.15
CCDC88A-207ENST00000436346 C8orf17Q9NRJ1 99 aa7.88□□□□□ -1.15
CCDC88A-207ENST00000436346 HIVEP1P15822 2718 aa7.88□□□□□ -1.15
CCDC88A-207ENST00000436346 IGLV7-43P04211 117 aa7.88□□□□□ -1.15
CCDC88A-207ENST00000436346 PRR34Q9NV39 138 aa7.88□□□□□ -1.15
CCDC88A-207ENST00000436346 PSORS1C2Q9UIG4 136 aa7.87□□□□□ -1.15
CCDC88A-207ENST00000436346 COL6A3P12111 3177 aa7.87□□□□□ -1.15
CCDC88A-207ENST00000436346 FREM2Q5SZK8 3169 aa7.87□□□□□ -1.15
CCDC88A-207ENST00000436346 RPS28P62857 69 aaKnown RBP7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 77.1 ms