RNA–Protein interactions for RNA: ENST00000421625.6

USP48-205, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2 BASIC

Gene USP48, Length 2,818 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-205ENST00000421625 LINC00528Q8N1L1 170 aa14.08□□□□□ -0.16
USP48-205ENST00000421625 CAMK2N2Q96S95 79 aa14.08□□□□□ -0.16
USP48-205ENST00000421625 M0R378 163 aa14.05□□□□□ -0.16
USP48-205ENST00000421625 BRK1Q8WUW1 75 aa14.05□□□□□ -0.16
USP48-205ENST00000421625 Q6ZRU5 148 aa14.05□□□□□ -0.16
USP48-205ENST00000421625 C3orf84H3BNL1 204 aa14.04□□□□□ -0.16
USP48-205ENST00000421625 SPART-AS1P0CW21 52 aa14.02□□□□□ -0.16
USP48-205ENST00000421625 APOC4P55056 127 aa14.02□□□□□ -0.16
USP48-205ENST00000421625 ATP5EP56381 51 aaPredicted RBP14.02□□□□□ -0.16
USP48-205ENST00000421625 FAM229BQ4G0N7 80 aa14.02□□□□□ -0.17
USP48-205ENST00000421625 OCR1Q9BZK8 76 aa14.02□□□□□ -0.17
USP48-205ENST00000421625 ERC2-IT1O76042 136 aa14□□□□□ -0.17
USP48-205ENST00000421625 EGFEM1PQ0D2K5 195 aa14□□□□□ -0.17
USP48-205ENST00000421625 WFDC10BQ8IUB3 73 aa14□□□□□ -0.17
USP48-205ENST00000421625 PRYO14603 147 aa13.98□□□□□ -0.17
USP48-205ENST00000421625 DEFB105AQ8NG35 78 aa13.98□□□□□ -0.17
USP48-205ENST00000421625 KRTAP26-1Q6PEX3 210 aa13.97□□□□□ -0.17
USP48-205ENST00000421625 C15orf56Q8N910 161 aa13.97□□□□□ -0.17
USP48-205ENST00000421625 Q6ZRP5 223 aa13.96□□□□□ -0.18
USP48-205ENST00000421625 HIGD2AQ9BW72 106 aa13.96□□□□□ -0.18
USP48-205ENST00000421625 MPLKIPQ8TAP9 179 aa13.95□□□□□ -0.18
USP48-205ENST00000421625 F8WDY8 70 aa13.94□□□□□ -0.18
USP48-205ENST00000421625 STAB1Q9NY15 2570 aa13.92□□□□□ -0.18
USP48-205ENST00000421625 Q8N377 158 aa13.92□□□□□ -0.18
USP48-205ENST00000421625 FUSP35637 526 aaKnown RBP eCLIP13.91□□□□□ -0.18
USP48-205ENST00000421625 SEC61GP60059 68 aa13.91□□□□□ -0.18
USP48-205ENST00000421625 Q6ZTC4 211 aa13.89□□□□□ -0.19
USP48-205ENST00000421625 FAM30AQ9NZY2 134 aa13.89□□□□□ -0.19
USP48-205ENST00000421625 SMIM29Q86T20 159 aa13.88□□□□□ -0.19
USP48-205ENST00000421625 KPRPQ5T749 579 aaPredicted RBP13.88□□□□□ -0.19
USP48-205ENST00000421625 MAST4O15021 2626 aa13.87□□□□□ -0.19
USP48-205ENST00000421625 C1orf195Q5TG92 126 aa13.87□□□□□ -0.19
USP48-205ENST00000421625 PKD1L1Q8TDX9 2849 aa13.87□□□□□ -0.19
USP48-205ENST00000421625 SERTAD4-AS1Q5TG53 156 aa13.87□□□□□ -0.19
USP48-205ENST00000421625 FBN1P35555 2871 aaKnown RBP13.87□□□□□ -0.19
USP48-205ENST00000421625 IGLV5-48A0A075B6I7 105 aa13.85□□□□□ -0.19
USP48-205ENST00000421625 KCNQ1DNQ9H478 68 aa13.85□□□□□ -0.19
USP48-205ENST00000421625 C7orf33Q8WU49 177 aa13.85□□□□□ -0.19
USP48-205ENST00000421625 V9GYY9 64 aa13.85□□□□□ -0.19
USP48-205ENST00000421625 ESRGQ1W209 222 aa13.84□□□□□ -0.19
USP48-205ENST00000421625 NKAPP1Q8N9T2 125 aa13.84□□□□□ -0.19
USP48-205ENST00000421625 A0A1W2PNM2 257 aa13.83□□□□□ -0.19
USP48-205ENST00000421625 BAHCC1Q9P281 2608 aa13.83□□□□□ -0.2
USP48-205ENST00000421625 SYCNQ0VAF6 134 aa13.81□□□□□ -0.2
USP48-205ENST00000421625 IGKV2D-24A0A075B6R9 120 aa13.8□□□□□ -0.2
USP48-205ENST00000421625 RPL37AP8A6NKH3 93 aa13.79□□□□□ -0.2
USP48-205ENST00000421625 Q9BRP9 147 aa13.78□□□□□ -0.2
USP48-205ENST00000421625 RETNQ9HD89 108 aa13.78□□□□□ -0.2
USP48-205ENST00000421625 ST20-AS1Q8NBB2 130 aa13.77□□□□□ -0.2
USP48-205ENST00000421625 C1orf137Q5JT78 98 aa13.77□□□□□ -0.21
USP48-205ENST00000421625 COL6A5A8TX70 2615 aa13.76□□□□□ -0.21
USP48-205ENST00000421625 Q6ZRX8 168 aa13.75□□□□□ -0.21
USP48-205ENST00000421625 FAM168BA1KXE4 195 aa13.74□□□□□ -0.21
USP48-205ENST00000421625 TNP2Q05952 138 aa13.74□□□□□ -0.21
USP48-205ENST00000421625 LCE6AA0A183 80 aa13.73□□□□□ -0.21
USP48-205ENST00000421625 LRCOL1A6NCL2 159 aa13.73□□□□□ -0.21
USP48-205ENST00000421625 DHRS4-AS1Q9P1J3 65 aa13.73□□□□□ -0.21
USP48-205ENST00000421625 NOTCH1P46531 2555 aa13.72□□□□□ -0.21
USP48-205ENST00000421625 Q8NBF4 154 aa13.72□□□□□ -0.21
USP48-205ENST00000421625 DSCR10P59022 87 aa13.72□□□□□ -0.21
USP48-205ENST00000421625 KRTAP4-16G5E9R7 235 aaPredicted RBP13.71□□□□□ -0.21
USP48-205ENST00000421625 hDV103S1A0JD37 113 aa13.71□□□□□ -0.22
USP48-205ENST00000421625 H3BNG1 76 aa13.7□□□□□ -0.22
USP48-205ENST00000421625 K7EQZ3 153 aa13.7□□□□□ -0.22
USP48-205ENST00000421625 ETDCA0A1B0GVM5 59 aa13.68□□□□□ -0.22
USP48-205ENST00000421625 OXLD1Q5BKU9 147 aa13.68□□□□□ -0.22
USP48-205ENST00000421625 A0A1B0GW54 56 aa13.68□□□□□ -0.22
USP48-205ENST00000421625 KRTAP24-1Q3LI83 254 aa13.68□□□□□ -0.22
USP48-205ENST00000421625 IGLV1-50A0A075B6I6 118 aa13.67□□□□□ -0.22
USP48-205ENST00000421625 LINC01556Q5JQF7 62 aa13.67□□□□□ -0.22
USP48-205ENST00000421625 C1orf64Q8NEQ6 169 aa13.67□□□□□ -0.22
USP48-205ENST00000421625 ZCCHC13Q8WW36 166 aaKnown RBP13.67□□□□□ -0.22
USP48-205ENST00000421625 SPRR4Q96PI1 79 aa13.66□□□□□ -0.22
USP48-205ENST00000421625 KRTAP7-1Q8IUC3 87 aa13.64□□□□□ -0.23
USP48-205ENST00000421625 SPRR1AP35321 89 aa13.64□□□□□ -0.23
USP48-205ENST00000421625 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.63□□□□□ -0.23
USP48-205ENST00000421625 ANK2Q01484 3957 aa13.63□□□□□ -0.23
USP48-205ENST00000421625 A0A0G2JQZ4 141 aa13.63□□□□□ -0.23
USP48-205ENST00000421625 A0A1W2PNN7 141 aa13.63□□□□□ -0.23
USP48-205ENST00000421625 TENM3Q9P273 2699 aa13.63□□□□□ -0.23
USP48-205ENST00000421625 PLA2G2DQ9UNK4 145 aa13.62□□□□□ -0.23
USP48-205ENST00000421625 PRR4Q16378 134 aa13.61□□□□□ -0.23
USP48-205ENST00000421625 TLX1NBP0CAT3 122 aa13.61□□□□□ -0.23
USP48-205ENST00000421625 CASC10Q5T4H9 136 aa13.6□□□□□ -0.23
USP48-205ENST00000421625 UBE2BP63146 152 aa13.59□□□□□ -0.23
USP48-205ENST00000421625 IGLV5-37A0A075B6J1 123 aa13.57□□□□□ -0.24
USP48-205ENST00000421625 HCG22E2RYF7 251 aa13.57□□□□□ -0.24
USP48-205ENST00000421625 DEFB116Q30KQ4 102 aa13.57□□□□□ -0.24
USP48-205ENST00000421625 NBEAL1Q6ZS30 2694 aa13.56□□□□□ -0.24
USP48-205ENST00000421625 KRTAP10-11P60412 298 aa13.56□□□□□ -0.24
USP48-205ENST00000421625 PRB2P02812 416 aaPredicted RBP13.55□□□□□ -0.24
USP48-205ENST00000421625 LINC00476Q8WZB0 136 aa13.55□□□□□ -0.24
USP48-205ENST00000421625 DEFB131BA0A096LNP1 70 aa13.55□□□□□ -0.24
USP48-205ENST00000421625 PSCAO43653 123 aa13.55□□□□□ -0.24
USP48-205ENST00000421625 Q1T7F1 81 aa13.54□□□□□ -0.24
USP48-205ENST00000421625 MRPL55Q7Z7F7 128 aaKnown RBP13.54□□□□□ -0.24
USP48-205ENST00000421625 PSPHP1O15172 72 aa13.51□□□□□ -0.25
USP48-205ENST00000421625 DNAH10OSP0CZ25 163 aa13.51□□□□□ -0.25
USP48-205ENST00000421625 WFDC13Q8IUB5 93 aa13.51□□□□□ -0.25
USP48-205ENST00000421625 CMYA5Q8N3K9 4069 aa13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms