RNA–Protein interactions for RNA: ENST00000419378.5

HMGN1-205, Transcript of high mobility group nucleosome binding domain 1, humanhuman

TSL 2

Gene HMGN1, Length 850 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN1-205ENST00000419378 HIST1H2BHQ93079 126 aa4.14□□□□□ -1.75
HMGN1-205ENST00000419378 HIST1H2BNQ99877 126 aa4.14□□□□□ -1.75
HMGN1-205ENST00000419378 HIST1H2BMQ99879 126 aa4.14□□□□□ -1.75
HMGN1-205ENST00000419378 PMCHL2Q9BQD1 86 aa4.14□□□□□ -1.75
HMGN1-205ENST00000419378 IGLV1-50A0A075B6I6 118 aa4.13□□□□□ -1.75
HMGN1-205ENST00000419378 SMIM13P0DJ93 91 aa4.13□□□□□ -1.75
HMGN1-205ENST00000419378 RPL28P46779 137 aaKnown RBP4.13□□□□□ -1.75
HMGN1-205ENST00000419378 MEIG1Q5JSS6 88 aa4.13□□□□□ -1.75
HMGN1-205ENST00000419378 MAP1LC3CQ9BXW4 147 aa4.13□□□□□ -1.75
HMGN1-205ENST00000419378 NDUFA12Q9UI09 145 aa4.13□□□□□ -1.75
HMGN1-205ENST00000419378 MYMXA0A1B0GTQ4 84 aa4.12□□□□□ -1.75
HMGN1-205ENST00000419378 LEPROTO15243 131 aa4.12□□□□□ -1.75
HMGN1-205ENST00000419378 IGKCP01834 107 aa4.12□□□□□ -1.75
HMGN1-205ENST00000419378 HERVK_113P61574 105 aa4.12□□□□□ -1.75
HMGN1-205ENST00000419378 KRTAP13-1Q8IUC0 172 aa4.12□□□□□ -1.75
HMGN1-205ENST00000419378 MIR7-3HGQ8N6C7 128 aa4.12□□□□□ -1.75
HMGN1-205ENST00000419378 PLEKHB2Q96CS7 222 aa4.12□□□□□ -1.75
HMGN1-205ENST00000419378 TMEM126AQ9H061 195 aa4.12□□□□□ -1.75
HMGN1-205ENST00000419378 LINC00587B1AMM8 73 aa4.11□□□□□ -1.75
HMGN1-205ENST00000419378 TMEM238C9JI98 176 aa4.11□□□□□ -1.75
HMGN1-205ENST00000419378 SYS1-DBNDD2H3BUS1 97 aa4.11□□□□□ -1.75
HMGN1-205ENST00000419378 J3QQQ9 107 aa4.11□□□□□ -1.75
HMGN1-205ENST00000419378 UBE2AP49459 152 aa4.11□□□□□ -1.75
HMGN1-205ENST00000419378 M0R378 163 aa4.1□□□□□ -1.75
HMGN1-205ENST00000419378 LGALS3P17931 250 aaKnown RBP4.1□□□□□ -1.75
HMGN1-205ENST00000419378 RPL13AP40429 203 aaKnown RBP4.1□□□□□ -1.75
HMGN1-205ENST00000419378 NMUP48645 174 aa4.1□□□□□ -1.75
HMGN1-205ENST00000419378 NDUFV3P56181 108 aaKnown RBP4.1□□□□□ -1.75
HMGN1-205ENST00000419378 PRLHP81277 87 aa4.1□□□□□ -1.75
HMGN1-205ENST00000419378 FAM19A1Q7Z5A9 133 aa4.1□□□□□ -1.75
HMGN1-205ENST00000419378 BOD1L2Q8IYS8 172 aa4.1□□□□□ -1.75
HMGN1-205ENST00000419378 LPAP08519 4548 aa4.09□□□□□ -1.75
HMGN1-205ENST00000419378 E9PLD3 99 aa4.09□□□□□ -1.75
HMGN1-205ENST00000419378 NCR3O14931 201 aa4.09□□□□□ -1.75
HMGN1-205ENST00000419378 COA6Q5JTJ3 125 aaKnown RBP4.09□□□□□ -1.75
HMGN1-205ENST00000419378 LINC01545Q5VT33 79 aa4.09□□□□□ -1.75
HMGN1-205ENST00000419378 DAND5Q8N907 189 aa4.09□□□□□ -1.75
HMGN1-205ENST00000419378 IGKV2D-26A0A0A0MRZ7 120 aa4.08□□□□□ -1.76
HMGN1-205ENST00000419378 KRTAP16-1A8MUX0 517 aa4.08□□□□□ -1.76
HMGN1-205ENST00000419378 LOC107984156A0A0G2JMH3 177 aa4.07□□□□□ -1.76
HMGN1-205ENST00000419378 A0A0J9YXY3 114 aa4.07□□□□□ -1.76
HMGN1-205ENST00000419378 C3orf79P0CE67 100 aa4.07□□□□□ -1.76
HMGN1-205ENST00000419378 CRYGAP11844 174 aa4.07□□□□□ -1.76
HMGN1-205ENST00000419378 ARL17AQ8IVW1 177 aa4.07□□□□□ -1.76
HMGN1-205ENST00000419378 OCR1Q9BZK8 76 aa4.07□□□□□ -1.76
HMGN1-205ENST00000419378 ANAPC11Q9NYG5 84 aa4.07□□□□□ -1.76
HMGN1-205ENST00000419378 TRBV10-3A0A0K0K1G6 114 aa4.06□□□□□ -1.76
HMGN1-205ENST00000419378 SPRR1AP35321 89 aa4.06□□□□□ -1.76
HMGN1-205ENST00000419378 KRTDAPP60985 99 aa4.06□□□□□ -1.76
HMGN1-205ENST00000419378 FAM229BQ4G0N7 80 aa4.06□□□□□ -1.76
HMGN1-205ENST00000419378 Q8N377 158 aa4.06□□□□□ -1.76
HMGN1-205ENST00000419378 LINC00337Q8N6G1 96 aa4.06□□□□□ -1.76
HMGN1-205ENST00000419378 MIEN1Q9BRT3 115 aa4.06□□□□□ -1.76
HMGN1-205ENST00000419378 HIGD2AQ9BW72 106 aa4.06□□□□□ -1.76
HMGN1-205ENST00000419378 KCNQ1DNQ9H478 68 aa4.06□□□□□ -1.76
HMGN1-205ENST00000419378 TRBV10-2A0A0K0K1G8 114 aa4.05□□□□□ -1.76
HMGN1-205ENST00000419378 KRTAP4-16G5E9R7 235 aaPredicted RBP4.05□□□□□ -1.76
HMGN1-205ENST00000419378 NPC2P61916 151 aa4.05□□□□□ -1.76
HMGN1-205ENST00000419378 KRTAP13-2Q52LG2 175 aa4.05□□□□□ -1.76
HMGN1-205ENST00000419378 SOSTDC1Q6X4U4 206 aa4.05□□□□□ -1.76
HMGN1-205ENST00000419378 LINC00518Q8N0U6 118 aa4.05□□□□□ -1.76
HMGN1-205ENST00000419378 TYMSOSQ8TAI1 123 aa4.05□□□□□ -1.76
HMGN1-205ENST00000419378 SPANXB1Q9NS25 103 aaPredicted RBP4.05□□□□□ -1.76
HMGN1-205ENST00000419378 ETDCA0A1B0GVM5 59 aa4.04□□□□□ -1.76
HMGN1-205ENST00000419378 C20orf202A1L168 122 aa4.04□□□□□ -1.76
HMGN1-205ENST00000419378 ZNF815PA8K554 130 aa4.04□□□□□ -1.76
HMGN1-205ENST00000419378 NDUFC2O95298 119 aa4.04□□□□□ -1.76
HMGN1-205ENST00000419378 S100A1P23297 94 aa4.04□□□□□ -1.76
HMGN1-205ENST00000419378 DDTP30046 118 aa4.04□□□□□ -1.76
HMGN1-205ENST00000419378 S100A12P80511 92 aa4.04□□□□□ -1.76
HMGN1-205ENST00000419378 TIMM17BO60830 172 aa4.03□□□□□ -1.76
HMGN1-205ENST00000419378 IGLV6-57P01721 117 aa4.03□□□□□ -1.76
HMGN1-205ENST00000419378 SMCR5Q8TEV8 140 aa4.03□□□□□ -1.76
HMGN1-205ENST00000419378 SPRR4Q96PI1 79 aa4.03□□□□□ -1.76
HMGN1-205ENST00000419378 TTTY13Q9BZ97 58 aa4.03□□□□□ -1.76
HMGN1-205ENST00000419378 TRAV23DV6A0A075B6W5 121 aa4.02□□□□□ -1.77
HMGN1-205ENST00000419378 TSPAN13O95857 204 aa4.02□□□□□ -1.77
HMGN1-205ENST00000419378 S100A7L2Q5SY68 101 aa4.02□□□□□ -1.77
HMGN1-205ENST00000419378 ATOH7Q8N100 152 aa4.02□□□□□ -1.77
HMGN1-205ENST00000419378 LINC00308Q8TCZ7 52 aa4.02□□□□□ -1.77
HMGN1-205ENST00000419378 ZNF706Q9Y5V0 76 aaPredicted RBP4.02□□□□□ -1.77
HMGN1-205ENST00000419378 RNF213Q63HN8 5207 aa4.02□□□□□ -1.77
HMGN1-205ENST00000419378 PRR4Q16378 134 aa4.01□□□□□ -1.77
HMGN1-205ENST00000419378 HIST3H2BBQ8N257 126 aa4.01□□□□□ -1.77
HMGN1-205ENST00000419378 LINC00304Q8N9R0 145 aa4.01□□□□□ -1.77
HMGN1-205ENST00000419378 HIST1H2BLQ99880 126 aa4.01□□□□□ -1.77
HMGN1-205ENST00000419378 SPANXCQ9NY87 97 aa4.01□□□□□ -1.77
HMGN1-205ENST00000419378 ERC2-IT1O76042 136 aa4□□□□□ -1.77
HMGN1-205ENST00000419378 AKR1D1P51857 326 aa4□□□□□ -1.77
HMGN1-205ENST00000419378 SCGB1D4Q6XE38 83 aa4□□□□□ -1.77
HMGN1-205ENST00000419378 Q6ZRX8 168 aa4□□□□□ -1.77
HMGN1-205ENST00000419378 C3orf22Q8N5N4 141 aa4□□□□□ -1.77
HMGN1-205ENST00000419378 Q9BRP9 147 aa4□□□□□ -1.77
HMGN1-205ENST00000419378 ZNF73O43830 326 aaPredicted RBP3.99□□□□□ -1.77
HMGN1-205ENST00000419378 S100A2P29034 98 aa3.99□□□□□ -1.77
HMGN1-205ENST00000419378 LINC00483Q53H64 154 aa3.99□□□□□ -1.77
HMGN1-205ENST00000419378 PCP2Q8IVA1 136 aa3.99□□□□□ -1.77
HMGN1-205ENST00000419378 SPANXDQ9BXN6 97 aa3.99□□□□□ -1.77
HMGN1-205ENST00000419378 PPDPFQ9H3Y8 114 aa3.99□□□□□ -1.77
HMGN1-205ENST00000419378 S100A6P06703 90 aa3.98□□□□□ -1.77
Retrieved 100 of 20,778 RNA–protein pairs in 82.9 ms