RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 ADAMTSL4-AS1Q5T5F5 129 aa6.43□□□□□ -1.38
USP4-204ENST00000416417 MIEN1Q9BRT3 115 aa6.43□□□□□ -1.38
USP4-204ENST00000416417 TRAV23DV6A0A075B6W5 121 aa6.42□□□□□ -1.38
USP4-204ENST00000416417 IGKCP01834 107 aa6.42□□□□□ -1.38
USP4-204ENST00000416417 SEC61BP60468 96 aaKnown RBP6.41□□□□□ -1.38
USP4-204ENST00000416417 HERVK_113P61574 105 aa6.41□□□□□ -1.38
USP4-204ENST00000416417 A0A0J9YXY3 114 aa6.4□□□□□ -1.38
USP4-204ENST00000416417 SLC25A20O43772 301 aa6.4□□□□□ -1.38
USP4-204ENST00000416417 LINC01547P58512 204 aaPredicted RBP6.4□□□□□ -1.38
USP4-204ENST00000416417 HSPB8Q9UJY1 196 aa6.4□□□□□ -1.38
USP4-204ENST00000416417 ZNF73O43830 326 aaPredicted RBP6.4□□□□□ -1.39
USP4-204ENST00000416417 NDUFC2O95298 119 aa6.4□□□□□ -1.39
USP4-204ENST00000416417 NMUP48645 174 aa6.4□□□□□ -1.39
USP4-204ENST00000416417 HRCT1Q6UXD1 115 aa6.4□□□□□ -1.39
USP4-204ENST00000416417 RPS29P62273 56 aaKnown RBP6.39□□□□□ -1.39
USP4-204ENST00000416417 XP32Q5T750 250 aa6.39□□□□□ -1.39
USP4-204ENST00000416417 JOSD1Q15040 202 aaPredicted RBP6.38□□□□□ -1.39
USP4-204ENST00000416417 OR13C6PQ8NH95 151 aa6.37□□□□□ -1.39
USP4-204ENST00000416417 E9PLD3 99 aa6.35□□□□□ -1.39
USP4-204ENST00000416417 LITAFQ99732 161 aa6.35□□□□□ -1.39
USP4-204ENST00000416417 C9orf92A6NGG3 77 aa6.35□□□□□ -1.39
USP4-204ENST00000416417 COLCA2A8K830 154 aa6.35□□□□□ -1.39
USP4-204ENST00000416417 S100A6P06703 90 aa6.35□□□□□ -1.39
USP4-204ENST00000416417 LCE2CQ5TA81 110 aa6.35□□□□□ -1.39
USP4-204ENST00000416417 LINC00518Q8N0U6 118 aa6.35□□□□□ -1.39
USP4-204ENST00000416417 LINC00308Q8TCZ7 52 aa6.35□□□□□ -1.39
USP4-204ENST00000416417 TTTY13Q9BZ97 58 aa6.35□□□□□ -1.39
USP4-204ENST00000416417 HINT1P49773 126 aaPredicted RBP6.33□□□□□ -1.4
USP4-204ENST00000416417 PCOTHQ58A44 107 aa6.32□□□□□ -1.4
USP4-204ENST00000416417 DEFB105AQ8NG35 78 aa6.32□□□□□ -1.4
USP4-204ENST00000416417 SPANXCQ9NY87 97 aa6.32□□□□□ -1.4
USP4-204ENST00000416417 SYS1-DBNDD2H3BUS1 97 aa6.31□□□□□ -1.4
USP4-204ENST00000416417 Q1RN00 199 aa6.31□□□□□ -1.4
USP4-204ENST00000416417 A0A0G2JQZ4 141 aa6.3□□□□□ -1.4
USP4-204ENST00000416417 H7C2G1 150 aa6.3□□□□□ -1.4
USP4-204ENST00000416417 SPRR1BP22528 89 aa6.3□□□□□ -1.4
USP4-204ENST00000416417 KRTAP19-2Q3LHN2 52 aa6.3□□□□□ -1.4
USP4-204ENST00000416417 LCE2DQ5TA82 110 aaPredicted RBP6.3□□□□□ -1.4
USP4-204ENST00000416417 ZNF815PA8K554 130 aa6.3□□□□□ -1.4
USP4-204ENST00000416417 COX7BP24311 80 aa6.3□□□□□ -1.4
USP4-204ENST00000416417 C6orf99Q4VX62 202 aa6.3□□□□□ -1.4
USP4-204ENST00000416417 DHRS4-AS1Q9P1J3 65 aa6.3□□□□□ -1.4
USP4-204ENST00000416417 IGLV8-61A0A075B6I0 122 aa6.29□□□□□ -1.4
USP4-204ENST00000416417 LIMD2Q9BT23 127 aa6.29□□□□□ -1.4
USP4-204ENST00000416417 LAMTOR3Q9UHA4 124 aa6.29□□□□□ -1.4
USP4-204ENST00000416417 FSIP2Q5CZC0 6907 aa6.29□□□□□ -1.4
USP4-204ENST00000416417 C5orf52A6NGY3 159 aa6.28□□□□□ -1.4
USP4-204ENST00000416417 TIMM17BO60830 172 aa6.28□□□□□ -1.4
USP4-204ENST00000416417 ELOF1P60002 83 aaKnown RBP6.28□□□□□ -1.4
USP4-204ENST00000416417 TAL2Q16559 108 aa6.28□□□□□ -1.4
USP4-204ENST00000416417 SPANXDQ9BXN6 97 aa6.28□□□□□ -1.4
USP4-204ENST00000416417 HIST1H2BKO60814 126 aa6.27□□□□□ -1.41
USP4-204ENST00000416417 HIST1H2BJP06899 126 aa6.27□□□□□ -1.41
USP4-204ENST00000416417 HIST1H2BOP23527 126 aa6.27□□□□□ -1.41
USP4-204ENST00000416417 HIST1H2BBP33778 126 aa6.27□□□□□ -1.41
USP4-204ENST00000416417 HIST1H2BDP58876 126 aa6.27□□□□□ -1.41
USP4-204ENST00000416417 HIST1H2BCP62807 126 aa6.27□□□□□ -1.41
USP4-204ENST00000416417 HIST2H2BEQ16778 126 aa6.27□□□□□ -1.41
USP4-204ENST00000416417 HIST2H2BFQ5QNW6 126 aaPredicted RBP6.27□□□□□ -1.41
USP4-204ENST00000416417 LINC01545Q5VT33 79 aa6.27□□□□□ -1.41
USP4-204ENST00000416417 HIST1H2BHQ93079 126 aa6.27□□□□□ -1.41
USP4-204ENST00000416417 HIST1H2BNQ99877 126 aa6.27□□□□□ -1.41
USP4-204ENST00000416417 HIST1H2BMQ99879 126 aa6.27□□□□□ -1.41
USP4-204ENST00000416417 CBY1Q9Y3M2 126 aa6.27□□□□□ -1.41
USP4-204ENST00000416417 MT1HP80294 61 aa6.26□□□□□ -1.41
USP4-204ENST00000416417 SLC25A34Q6PIV7 304 aa6.26□□□□□ -1.41
USP4-204ENST00000416417 C3orf79P0CE67 100 aa6.25□□□□□ -1.41
USP4-204ENST00000416417 PET117Q6UWS5 81 aa6.25□□□□□ -1.41
USP4-204ENST00000416417 SMIM29Q86T20 159 aa6.25□□□□□ -1.41
USP4-204ENST00000416417 PRO1933Q9H354 126 aa6.24□□□□□ -1.41
USP4-204ENST00000416417 CRCT1Q9UGL9 99 aa6.24□□□□□ -1.41
USP4-204ENST00000416417 TEX49A0A1B0GTD5 131 aa6.23□□□□□ -1.41
USP4-204ENST00000416417 KRTDAPP60985 99 aa6.23□□□□□ -1.41
USP4-204ENST00000416417 A6NDN8 102 aa6.22□□□□□ -1.41
USP4-204ENST00000416417 PCP4L1A6NKN8 68 aa6.22□□□□□ -1.41
USP4-204ENST00000416417 ANKRD39Q53RE8 183 aa6.22□□□□□ -1.41
USP4-204ENST00000416417 C1orf195Q5TG92 126 aa6.22□□□□□ -1.41
USP4-204ENST00000416417 SCGB1D4Q6XE38 83 aa6.22□□□□□ -1.41
USP4-204ENST00000416417 ATOH7Q8N100 152 aa6.22□□□□□ -1.41
USP4-204ENST00000416417 AKR1D1P51857 326 aa6.2□□□□□ -1.42
USP4-204ENST00000416417 CD164Q04900 197 aa6.2□□□□□ -1.42
USP4-204ENST00000416417 MUSTN1Q8IVN3 82 aa6.2□□□□□ -1.42
USP4-204ENST00000416417 A0A1B0GWB2 263 aa6.19□□□□□ -1.42
USP4-204ENST00000416417 PCP2Q8IVA1 136 aa6.19□□□□□ -1.42
USP4-204ENST00000416417 C12orf57Q99622 126 aa6.19□□□□□ -1.42
USP4-204ENST00000416417 IGLV5-48A0A075B6I7 105 aa6.18□□□□□ -1.42
USP4-204ENST00000416417 TRBV7-6A0A0J9YX20 115 aa6.18□□□□□ -1.42
USP4-204ENST00000416417 SMIM11BQ8TCY0 68 aa6.17□□□□□ -1.42
USP4-204ENST00000416417 KRTAP10-6P60371 365 aaPredicted RBP6.16□□□□□ -1.42
USP4-204ENST00000416417 SMIM6P0DI80 62 aa6.15□□□□□ -1.42
USP4-204ENST00000416417 IFITM1P13164 125 aa6.15□□□□□ -1.42
USP4-204ENST00000416417 LORP23490 312 aaPredicted RBP6.15□□□□□ -1.42
USP4-204ENST00000416417 RPL37P61927 97 aaKnown RBP6.15□□□□□ -1.42
USP4-204ENST00000416417 Q5XG85 94 aa6.15□□□□□ -1.42
USP4-204ENST00000416417 M0R2T5 61 aa6.14□□□□□ -1.43
USP4-204ENST00000416417 CFC1BP0CG36 223 aa6.14□□□□□ -1.43
USP4-204ENST00000416417 C20orf202A1L168 122 aa6.13□□□□□ -1.43
USP4-204ENST00000416417 COA6Q5JTJ3 125 aaKnown RBP6.13□□□□□ -1.43
USP4-204ENST00000416417 COX6B2Q6YFQ2 88 aa6.12□□□□□ -1.43
USP4-204ENST00000416417 COPS9Q8WXC6 57 aa6.12□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms