RNA–Protein interactions for RNA: ENST00000399084.5

HLA-DQB1-204, Transcript of major histocompatibility complex, class II, DQ beta 1, humanhuman

APPRIS P1 BASIC

Gene HLA-DQB1, Length 1,734 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQB1-204ENST00000399084 TRBV7-4A0A0J9YYF1 115 aa11.47□□□□□ -0.57
HLA-DQB1-204ENST00000399084 CNBPP62633 177 aaKnown RBP11.47□□□□□ -0.57
HLA-DQB1-204ENST00000399084 SPRR1AP35321 89 aa11.46□□□□□ -0.57
HLA-DQB1-204ENST00000399084 CASC10Q5T4H9 136 aa11.46□□□□□ -0.57
HLA-DQB1-204ENST00000399084 UBE2DNLQ8IWF7 75 aa11.46□□□□□ -0.57
HLA-DQB1-204ENST00000399084 PKIGQ9Y2B9 76 aa11.46□□□□□ -0.57
HLA-DQB1-204ENST00000399084 HIST1H4AP62805 103 aaKnown RBP11.46□□□□□ -0.58
HLA-DQB1-204ENST00000399084 NUPR2A6NF83 97 aa11.43□□□□□ -0.58
HLA-DQB1-204ENST00000399084 ATOX1O00244 68 aa11.43□□□□□ -0.58
HLA-DQB1-204ENST00000399084 Q6ZRX8 168 aa11.43□□□□□ -0.58
HLA-DQB1-204ENST00000399084 KRTAP4-16G5E9R7 235 aaPredicted RBP11.42□□□□□ -0.58
HLA-DQB1-204ENST00000399084 MRPL55Q7Z7F7 128 aaKnown RBP11.42□□□□□ -0.58
HLA-DQB1-204ENST00000399084 PSCAO43653 123 aa11.41□□□□□ -0.58
HLA-DQB1-204ENST00000399084 ETDCA0A1B0GVM5 59 aa11.4□□□□□ -0.58
HLA-DQB1-204ENST00000399084 A0A1B0GW54 56 aa11.4□□□□□ -0.58
HLA-DQB1-204ENST00000399084 B5MCH6 92 aa11.4□□□□□ -0.58
HLA-DQB1-204ENST00000399084 IGKV3D-7A0A0C4DH55 119 aa11.4□□□□□ -0.58
HLA-DQB1-204ENST00000399084 C16orf90A8MZG2 172 aa11.4□□□□□ -0.58
HLA-DQB1-204ENST00000399084 MGAM2Q2M2H8 2515 aa11.38□□□□□ -0.59
HLA-DQB1-204ENST00000399084 HUWE1Q7Z6Z7 4374 aaKnown RBP11.38□□□□□ -0.59
HLA-DQB1-204ENST00000399084 KRTAP1-5Q9BYS1 174 aa11.37□□□□□ -0.59
HLA-DQB1-204ENST00000399084 CXCL6P80162 114 aa11.36□□□□□ -0.59
HLA-DQB1-204ENST00000399084 IGLV5-48A0A075B6I7 105 aa11.35□□□□□ -0.59
HLA-DQB1-204ENST00000399084 FAM168BA1KXE4 195 aa11.35□□□□□ -0.59
HLA-DQB1-204ENST00000399084 UQCRQO14949 82 aa11.35□□□□□ -0.59
HLA-DQB1-204ENST00000399084 KRTAP7-1Q8IUC3 87 aa11.35□□□□□ -0.59
HLA-DQB1-204ENST00000399084 RPL37AP8A6NKH3 93 aa11.35□□□□□ -0.59
HLA-DQB1-204ENST00000399084 CCDC179H3BU77 68 aa11.34□□□□□ -0.59
HLA-DQB1-204ENST00000399084 BCE1O60756 84 aa11.34□□□□□ -0.59
HLA-DQB1-204ENST00000399084 Q6ZVQ6 151 aa11.34□□□□□ -0.59
HLA-DQB1-204ENST00000399084 REG3GQ6UW15 175 aa11.33□□□□□ -0.6
HLA-DQB1-204ENST00000399084 FAM19A5Q7Z5A7 132 aaPredicted RBP11.33□□□□□ -0.6
HLA-DQB1-204ENST00000399084 Q8N377 158 aa11.33□□□□□ -0.6
HLA-DQB1-204ENST00000399084 C3orf22Q8N5N4 141 aa11.32□□□□□ -0.6
HLA-DQB1-204ENST00000399084 NBDYA0A0U1RRE5 68 aa11.32□□□□□ -0.6
HLA-DQB1-204ENST00000399084 COX7CP15954 63 aa11.31□□□□□ -0.6
HLA-DQB1-204ENST00000399084 LINC01547P58512 204 aaPredicted RBP11.31□□□□□ -0.6
HLA-DQB1-204ENST00000399084 Q9BRP9 147 aa11.31□□□□□ -0.6
HLA-DQB1-204ENST00000399084 LINC00474Q9P2X8 69 aa11.29□□□□□ -0.6
HLA-DQB1-204ENST00000399084 A0A096LNI7 61 aa11.28□□□□□ -0.6
HLA-DQB1-204ENST00000399084 M0R2N4 97 aa11.27□□□□□ -0.61
HLA-DQB1-204ENST00000399084 HAMPP81172 84 aa11.27□□□□□ -0.61
HLA-DQB1-204ENST00000399084 SERP2Q8N6R1 65 aa11.27□□□□□ -0.61
HLA-DQB1-204ENST00000399084 C9orf163Q8N9P6 203 aa11.27□□□□□ -0.61
HLA-DQB1-204ENST00000399084 MEGF8Q7Z7M0 2845 aa11.27□□□□□ -0.61
HLA-DQB1-204ENST00000399084 DEFB105AQ8NG35 78 aa11.26□□□□□ -0.61
HLA-DQB1-204ENST00000399084 LRCOL1A6NCL2 159 aa11.25□□□□□ -0.61
HLA-DQB1-204ENST00000399084 FUSP35637 526 aaKnown RBP eCLIP11.25□□□□□ -0.61
HLA-DQB1-204ENST00000399084 UBE2BP63146 152 aa11.25□□□□□ -0.61
HLA-DQB1-204ENST00000399084 A0A087WVE0 104 aa11.24□□□□□ -0.61
HLA-DQB1-204ENST00000399084 TNP2Q05952 138 aa11.24□□□□□ -0.61
HLA-DQB1-204ENST00000399084 SMIM20Q8N5G0 67 aa11.24□□□□□ -0.61
HLA-DQB1-204ENST00000399084 DNAH1Q9P2D7 4330 aa11.24□□□□□ -0.61
HLA-DQB1-204ENST00000399084 STAB2Q8WWQ8 2551 aa11.24□□□□□ -0.61
HLA-DQB1-204ENST00000399084 H0Y9J4 135 aa11.23□□□□□ -0.61
HLA-DQB1-204ENST00000399084 CRYGAP11844 174 aa11.23□□□□□ -0.61
HLA-DQB1-204ENST00000399084 C9orf153Q5TBE3 101 aa11.23□□□□□ -0.61
HLA-DQB1-204ENST00000399084 FAM19A1Q7Z5A9 133 aa11.23□□□□□ -0.61
HLA-DQB1-204ENST00000399084 A0A1W2PNN7 141 aa11.21□□□□□ -0.61
HLA-DQB1-204ENST00000399084 Q6ZRN7 208 aaPredicted RBP11.21□□□□□ -0.61
HLA-DQB1-204ENST00000399084 IGKV2-24A0A0C4DH68 120 aa11.21□□□□□ -0.62
HLA-DQB1-204ENST00000399084 NREPQ16612 68 aa11.21□□□□□ -0.62
HLA-DQB1-204ENST00000399084 IGLV2-33A0A075B6J2 118 aaPredicted RBP11.18□□□□□ -0.62
HLA-DQB1-204ENST00000399084 C1orf137Q5JT78 98 aa11.18□□□□□ -0.62
HLA-DQB1-204ENST00000399084 DNAH9Q9NYC9 4486 aa11.18□□□□□ -0.62
HLA-DQB1-204ENST00000399084 COL7A1Q02388 2944 aa11.18□□□□□ -0.62
HLA-DQB1-204ENST00000399084 TGP01266 2768 aa11.17□□□□□ -0.62
HLA-DQB1-204ENST00000399084 F8WEM9 126 aa11.17□□□□□ -0.62
HLA-DQB1-204ENST00000399084 ERC2-IT1O76042 136 aa11.17□□□□□ -0.62
HLA-DQB1-204ENST00000399084 Q8NBF4 154 aa11.17□□□□□ -0.62
HLA-DQB1-204ENST00000399084 SPRR4Q96PI1 79 aa11.17□□□□□ -0.62
HLA-DQB1-204ENST00000399084 ST20-AS1Q8NBB2 130 aa11.16□□□□□ -0.62
HLA-DQB1-204ENST00000399084 DYNC2H1Q8NCM8 4307 aaKnown RBP11.15□□□□□ -0.63
HLA-DQB1-204ENST00000399084 IGLV8-61A0A075B6I0 122 aa11.14□□□□□ -0.63
HLA-DQB1-204ENST00000399084 EPM2AB3EWF7 344 aa11.13□□□□□ -0.63
HLA-DQB1-204ENST00000399084 SMIM29Q86T20 159 aa11.12□□□□□ -0.63
HLA-DQB1-204ENST00000399084 TRAV7A0A075B6U4 112 aa11.12□□□□□ -0.63
HLA-DQB1-204ENST00000399084 A0A1W2PNM2 257 aa11.12□□□□□ -0.63
HLA-DQB1-204ENST00000399084 BPY2O14599 106 aa11.12□□□□□ -0.63
HLA-DQB1-204ENST00000399084 SPRR1BP22528 89 aa11.12□□□□□ -0.63
HLA-DQB1-204ENST00000399084 SS18L2Q9UHA2 77 aa11.1□□□□□ -0.63
HLA-DQB1-204ENST00000399084 PHF5AQ7RTV0 110 aaKnown RBP11.09□□□□□ -0.63
HLA-DQB1-204ENST00000399084 A0A087WTM6 91 aa11.07□□□□□ -0.64
HLA-DQB1-204ENST00000399084 CHTF8P0CG12 524 aa11.07□□□□□ -0.64
HLA-DQB1-204ENST00000399084 PRLHP81277 87 aa11.07□□□□□ -0.64
HLA-DQB1-204ENST00000399084 Q6ZR54 194 aa11.07□□□□□ -0.64
HLA-DQB1-204ENST00000399084 HIGD2AQ9BW72 106 aa11.07□□□□□ -0.64
HLA-DQB1-204ENST00000399084 C3orf84H3BNL1 204 aa11.06□□□□□ -0.64
HLA-DQB1-204ENST00000399084 LINC00476Q8WZB0 136 aa11.06□□□□□ -0.64
HLA-DQB1-204ENST00000399084 SPACA4Q8TDM5 124 aa11.04□□□□□ -0.64
HLA-DQB1-204ENST00000399084 UBE2AP49459 152 aa11.04□□□□□ -0.64
HLA-DQB1-204ENST00000399084 IGKV4-1P06312 121 aa11.03□□□□□ -0.64
HLA-DQB1-204ENST00000399084 SCXQ7RTU7 201 aa11.03□□□□□ -0.64
HLA-DQB1-204ENST00000399084 DPH3Q96FX2 82 aa11.03□□□□□ -0.64
HLA-DQB1-204ENST00000399084 TMEM258P61165 79 aa11.02□□□□□ -0.65
HLA-DQB1-204ENST00000399084 IGFL1Q6UW32 110 aa11.01□□□□□ -0.65
HLA-DQB1-204ENST00000399084 KRTAP13-1Q8IUC0 172 aa10.99□□□□□ -0.65
HLA-DQB1-204ENST00000399084 KRTAP11-1Q8IUC1 163 aa10.99□□□□□ -0.65
HLA-DQB1-204ENST00000399084 KLKP1Q107X0 134 aa10.96□□□□□ -0.65
HLA-DQB1-204ENST00000399084 C1orf134Q5TEV5 83 aa10.96□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 70 ms