RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 IGFL1Q6UW32 110 aa5.87□□□□□ -1.47
LIG3-202ENST00000378526 SPINK7P58062 85 aa5.86□□□□□ -1.47
LIG3-202ENST00000378526 C18orf65Q6ZTR6 163 aa5.86□□□□□ -1.47
LIG3-202ENST00000378526 Q8NA96 180 aa5.86□□□□□ -1.47
LIG3-202ENST00000378526 LINC00315P59091 139 aa5.86□□□□□ -1.47
LIG3-202ENST00000378526 SRCAPQ6ZRS2 3230 aa5.86□□□□□ -1.47
LIG3-202ENST00000378526 C9orf163Q8N9P6 203 aa5.86□□□□□ -1.47
LIG3-202ENST00000378526 LINC00528Q8N1L1 170 aa5.86□□□□□ -1.47
LIG3-202ENST00000378526 SPTBN4Q9H254 2564 aa5.86□□□□□ -1.47
LIG3-202ENST00000378526 IGLV5-48A0A075B6I7 105 aa5.85□□□□□ -1.47
LIG3-202ENST00000378526 C15orf56Q8N910 161 aa5.84□□□□□ -1.47
LIG3-202ENST00000378526 Q8N9P0 234 aaPredicted RBP5.84□□□□□ -1.47
LIG3-202ENST00000378526 MTORP42345 2549 aa5.84□□□□□ -1.47
LIG3-202ENST00000378526 PRRC2CQ9Y520 2896 aaKnown RBP5.83□□□□□ -1.48
LIG3-202ENST00000378526 PRAC1Q96KF2 57 aa5.83□□□□□ -1.48
LIG3-202ENST00000378526 Q5VV11 94 aa5.83□□□□□ -1.48
LIG3-202ENST00000378526 CHD8Q9HCK8 2581 aa5.82□□□□□ -1.48
LIG3-202ENST00000378526 FP248Q71RG6 208 aaPredicted RBP5.82□□□□□ -1.48
LIG3-202ENST00000378526 OBSCN-AS1Q96MR7 158 aa5.82□□□□□ -1.48
LIG3-202ENST00000378526 DSCR10P59022 87 aa5.81□□□□□ -1.48
LIG3-202ENST00000378526 TNP2Q05952 138 aa5.81□□□□□ -1.48
LIG3-202ENST00000378526 ANKRD11Q6UB99 2663 aaPredicted RBP5.8□□□□□ -1.48
LIG3-202ENST00000378526 Q8N377 158 aa5.8□□□□□ -1.48
LIG3-202ENST00000378526 IGLV1-50A0A075B6I6 118 aa5.8□□□□□ -1.48
LIG3-202ENST00000378526 CENPFP49454 3210 aa5.8□□□□□ -1.48
LIG3-202ENST00000378526 C16orf95Q9H693 158 aa5.79□□□□□ -1.48
LIG3-202ENST00000378526 ROMO1P60602 79 aa5.79□□□□□ -1.48
LIG3-202ENST00000378526 IGF2RP11717 2491 aa5.79□□□□□ -1.48
LIG3-202ENST00000378526 FAM229BQ4G0N7 80 aa5.79□□□□□ -1.48
LIG3-202ENST00000378526 INAFM1C9JVW0 142 aa5.79□□□□□ -1.48
LIG3-202ENST00000378526 USP9XQ93008 2570 aaPredicted RBP5.78□□□□□ -1.48
LIG3-202ENST00000378526 IGLV5-37A0A075B6J1 123 aa5.78□□□□□ -1.48
LIG3-202ENST00000378526 JMJD1CQ15652 2540 aa5.77□□□□□ -1.49
LIG3-202ENST00000378526 COL4A4P53420 1690 aaPredicted RBP5.77□□□□□ -1.49
LIG3-202ENST00000378526 COX6B2Q6YFQ2 88 aa5.77□□□□□ -1.49
LIG3-202ENST00000378526 PRR26Q8N8Z3 221 aa5.76□□□□□ -1.49
LIG3-202ENST00000378526 HRES1P13985 223 aa5.75□□□□□ -1.49
LIG3-202ENST00000378526 ZNF575Q86XF7 245 aa5.75□□□□□ -1.49
LIG3-202ENST00000378526 LINC00304Q8N9R0 145 aa5.74□□□□□ -1.49
LIG3-202ENST00000378526 EPG5Q9HCE0 2579 aa5.74□□□□□ -1.49
LIG3-202ENST00000378526 RTL8CO15255 209 aa5.73□□□□□ -1.49
LIG3-202ENST00000378526 DNAH10OSP0CZ25 163 aa5.73□□□□□ -1.49
LIG3-202ENST00000378526 USP9YO00507 2555 aaPredicted RBP5.73□□□□□ -1.49
LIG3-202ENST00000378526 Q8N1X5 172 aa5.73□□□□□ -1.49
LIG3-202ENST00000378526 BPTFQ12830 3046 aa5.72□□□□□ -1.49
LIG3-202ENST00000378526 ZNF861PO60384 105 aa5.72□□□□□ -1.49
LIG3-202ENST00000378526 Q8NAQ8 132 aa5.72□□□□□ -1.49
LIG3-202ENST00000378526 SPRR4Q96PI1 79 aa5.71□□□□□ -1.5
LIG3-202ENST00000378526 FAM168BA1KXE4 195 aa5.7□□□□□ -1.5
LIG3-202ENST00000378526 EP400Q96L91 3159 aa5.7□□□□□ -1.5
LIG3-202ENST00000378526 C19orf73Q9NVV2 129 aa5.69□□□□□ -1.5
LIG3-202ENST00000378526 GOLGB1Q14789 3259 aaKnown RBP5.69□□□□□ -1.5
LIG3-202ENST00000378526 USP24Q9UPU5 2620 aa5.67□□□□□ -1.5
LIG3-202ENST00000378526 RPL37P61927 97 aaKnown RBP5.67□□□□□ -1.5
LIG3-202ENST00000378526 PRR34Q9NV39 138 aa5.67□□□□□ -1.5
LIG3-202ENST00000378526 CEP295Q9C0D2 2601 aa5.67□□□□□ -1.5
LIG3-202ENST00000378526 A0A1W2PNM2 257 aa5.65□□□□□ -1.5
LIG3-202ENST00000378526 FASNP49327 2511 aaKnown RBP5.65□□□□□ -1.5
LIG3-202ENST00000378526 NBDYA0A0U1RRE5 68 aa5.65□□□□□ -1.51
LIG3-202ENST00000378526 C9orf92A6NGG3 77 aa5.64□□□□□ -1.51
LIG3-202ENST00000378526 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP5.63□□□□□ -1.51
LIG3-202ENST00000378526 A0A1W2PNU3 283 aaPredicted RBP5.63□□□□□ -1.51
LIG3-202ENST00000378526 H1FX-AS1Q4G0G2 97 aa5.63□□□□□ -1.51
LIG3-202ENST00000378526 A0A087X002 238 aa5.6□□□□□ -1.51
LIG3-202ENST00000378526 WISP2O76076 250 aa5.6□□□□□ -1.51
LIG3-202ENST00000378526 DMBT1Q9UGM3 2413 aaPredicted RBP5.6□□□□□ -1.51
LIG3-202ENST00000378526 KRTAP25-1Q3LHN0 102 aa5.59□□□□□ -1.51
LIG3-202ENST00000378526 S4R3F8 94 aa5.59□□□□□ -1.51
LIG3-202ENST00000378526 CYSTM1Q9H1C7 97 aa5.57□□□□□ -1.52
LIG3-202ENST00000378526 CNBPP62633 177 aaKnown RBP5.57□□□□□ -1.52
LIG3-202ENST00000378526 PSORS1C2Q9UIG4 136 aa5.57□□□□□ -1.52
LIG3-202ENST00000378526 CENPEQ02224 2701 aa5.56□□□□□ -1.52
LIG3-202ENST00000378526 NDUFAF8A1L188 74 aa5.56□□□□□ -1.52
LIG3-202ENST00000378526 PLAC4Q8WY50 150 aa5.56□□□□□ -1.52
LIG3-202ENST00000378526 A6NN06 94 aa5.56□□□□□ -1.52
LIG3-202ENST00000378526 R4GN34 69 aa5.55□□□□□ -1.52
LIG3-202ENST00000378526 OXTP01178 125 aa5.54□□□□□ -1.52
LIG3-202ENST00000378526 SPATA8Q6RVD6 105 aa5.54□□□□□ -1.52
LIG3-202ENST00000378526 KLK9Q2XQG4 91 aa5.54□□□□□ -1.52
LIG3-202ENST00000378526 J3QL48 77 aa5.51□□□□□ -1.53
LIG3-202ENST00000378526 A0A0G2JQZ4 141 aa5.51□□□□□ -1.53
LIG3-202ENST00000378526 A0A1W2PNN7 141 aa5.51□□□□□ -1.53
LIG3-202ENST00000378526 ZCCHC13Q8WW36 166 aaKnown RBP5.51□□□□□ -1.53
LIG3-202ENST00000378526 MMP24-AS1A0A0U1RRL7 71 aa5.5□□□□□ -1.53
LIG3-202ENST00000378526 Q6ZSA8 131 aa5.5□□□□□ -1.53
LIG3-202ENST00000378526 DNAH12Q6ZR08 3092 aa5.48□□□□□ -1.53
LIG3-202ENST00000378526 Q5W150 140 aa5.47□□□□□ -1.53
LIG3-202ENST00000378526 COL4A2P08572 1712 aa5.47□□□□□ -1.53
LIG3-202ENST00000378526 AKAP13Q12802 2813 aa5.46□□□□□ -1.54
LIG3-202ENST00000378526 C20orf166-AS1Q96NR2 134 aa5.45□□□□□ -1.54
LIG3-202ENST00000378526 NBEAL1Q6ZS30 2694 aa5.44□□□□□ -1.54
LIG3-202ENST00000378526 PCNTO95613 3336 aa5.44□□□□□ -1.54
LIG3-202ENST00000378526 Q6ZR54 194 aa5.43□□□□□ -1.54
LIG3-202ENST00000378526 GIG44P09565 113 aaPredicted RBP5.43□□□□□ -1.54
LIG3-202ENST00000378526 ANAPC11Q9NYG5 84 aa5.41□□□□□ -1.54
LIG3-202ENST00000378526 LINC00472Q9H8W2 130 aa5.41□□□□□ -1.54
LIG3-202ENST00000378526 HECTD1Q9ULT8 2610 aa5.4□□□□□ -1.54
LIG3-202ENST00000378526 UTRNP46939 3433 aa5.4□□□□□ -1.54
LIG3-202ENST00000378526 A0A087WTM6 91 aa5.4□□□□□ -1.54
LIG3-202ENST00000378526 LINC00612Q8N6U2 182 aa5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 683 ms