RNA–Protein interactions for RNA: ENST00000354504.7

VPS54-202, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS54, Length 3,594 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-202ENST00000354504 NDUFA12Q9UI09 145 aa1.47□□□□□ -2.17
VPS54-202ENST00000354504 KLK5Q9Y337 293 aaPredicted RBP1.47□□□□□ -2.17
VPS54-202ENST00000354504 DNAH10OSP0CZ25 163 aa1.47□□□□□ -2.17
VPS54-202ENST00000354504 CMC4P56277 68 aaPredicted RBP1.47□□□□□ -2.17
VPS54-202ENST00000354504 LINC00158P58513 81 aa1.47□□□□□ -2.17
VPS54-202ENST00000354504 Q6ZTC4 211 aa1.47□□□□□ -2.17
VPS54-202ENST00000354504 WFDC10BQ8IUB3 73 aa1.47□□□□□ -2.17
VPS54-202ENST00000354504 LINC00269Q8N2A0 174 aa1.47□□□□□ -2.17
VPS54-202ENST00000354504 UBE2WQ96B02 151 aa1.47□□□□□ -2.17
VPS54-202ENST00000354504 Q9HAA7 133 aa1.47□□□□□ -2.17
VPS54-202ENST00000354504 C6orf48Q9UBA6 75 aa1.47□□□□□ -2.17
VPS54-202ENST00000354504 KLK12Q9UKR0 248 aa1.47□□□□□ -2.17
VPS54-202ENST00000354504 LRCOL1A6NCL2 159 aa1.46□□□□□ -2.18
VPS54-202ENST00000354504 F8W1H4 67 aa1.46□□□□□ -2.18
VPS54-202ENST00000354504 SPART-AS1P0CW21 52 aa1.46□□□□□ -2.18
VPS54-202ENST00000354504 SCGB1A1P11684 91 aa1.46□□□□□ -2.18
VPS54-202ENST00000354504 SPRR1AP35321 89 aa1.46□□□□□ -2.18
VPS54-202ENST00000354504 APOC4P55056 127 aa1.46□□□□□ -2.18
VPS54-202ENST00000354504 HIST1H4AP62805 103 aaKnown RBP1.46□□□□□ -2.18
VPS54-202ENST00000354504 HERVK_113P63121 156 aa1.46□□□□□ -2.18
VPS54-202ENST00000354504 ETDBQ3ZM63 59 aa1.46□□□□□ -2.18
VPS54-202ENST00000354504 PRO0255Q9UI72 69 aa1.46□□□□□ -2.18
VPS54-202ENST00000354504 KIAA1109Q2LD37 5005 aa1.46□□□□□ -2.18
VPS54-202ENST00000354504 RPL37AP8A6NKH3 93 aa1.46□□□□□ -2.18
VPS54-202ENST00000354504 ATP5G1P05496 136 aa1.46□□□□□ -2.18
VPS54-202ENST00000354504 CIRBPQ14011 172 aaKnown RBP1.46□□□□□ -2.18
VPS54-202ENST00000354504 LINC01620Q4KN68 170 aa1.46□□□□□ -2.18
VPS54-202ENST00000354504 C9orf116Q5BN46 136 aaPredicted RBP1.46□□□□□ -2.18
VPS54-202ENST00000354504 KRTAP13-1Q8IUC0 172 aa1.46□□□□□ -2.18
VPS54-202ENST00000354504 LINC00588Q9Y4M8 146 aa1.46□□□□□ -2.18
VPS54-202ENST00000354504 M0R2N4 97 aa1.46□□□□□ -2.18
VPS54-202ENST00000354504 TLX1NBP0CAT3 122 aa1.46□□□□□ -2.18
VPS54-202ENST00000354504 LELP1Q5T871 98 aa1.46□□□□□ -2.18
VPS54-202ENST00000354504 GTF2H5Q6ZYL4 71 aa1.46□□□□□ -2.18
VPS54-202ENST00000354504 PRO1854Q9UHT4 67 aa1.46□□□□□ -2.18
VPS54-202ENST00000354504 ICOSQ9Y6W8 199 aa1.46□□□□□ -2.18
VPS54-202ENST00000354504 PANO1I0J062 215 aa1.45□□□□□ -2.18
VPS54-202ENST00000354504 LECT2O14960 151 aa1.45□□□□□ -2.18
VPS54-202ENST00000354504 NDUFC2O95298 119 aa1.45□□□□□ -2.18
VPS54-202ENST00000354504 CHTF8P0CG12 524 aa1.45□□□□□ -2.18
VPS54-202ENST00000354504 IFITM1P13164 125 aa1.45□□□□□ -2.18
VPS54-202ENST00000354504 SEC61GP60059 68 aa1.45□□□□□ -2.18
VPS54-202ENST00000354504 CKS1BP61024 79 aa1.45□□□□□ -2.18
VPS54-202ENST00000354504 PRR3P79522 188 aaKnown RBP1.45□□□□□ -2.18
VPS54-202ENST00000354504 COX7B2Q8TF08 81 aa1.45□□□□□ -2.18
VPS54-202ENST00000354504 CLEC2BQ92478 149 aa1.45□□□□□ -2.18
VPS54-202ENST00000354504 APLNQ9ULZ1 77 aa1.45□□□□□ -2.18
VPS54-202ENST00000354504 IBA57-AS1B1ANH7 110 aa1.45□□□□□ -2.18
VPS54-202ENST00000354504 CRPP02741 224 aa1.45□□□□□ -2.18
VPS54-202ENST00000354504 LINC01556Q5JQF7 62 aa1.45□□□□□ -2.18
VPS54-202ENST00000354504 ANKRD29Q8N6D5 301 aa1.45□□□□□ -2.18
VPS54-202ENST00000354504 DPH3Q96FX2 82 aa1.45□□□□□ -2.18
VPS54-202ENST00000354504 ERG28Q9UKR5 140 aa1.45□□□□□ -2.18
VPS54-202ENST00000354504 PCLOQ9Y6V0 5065 aa1.45□□□□□ -2.18
VPS54-202ENST00000354504 IGKV2D-24A0A075B6R9 120 aa1.44□□□□□ -2.18
VPS54-202ENST00000354504 DEFB131BA0A096LNP1 70 aa1.44□□□□□ -2.18
VPS54-202ENST00000354504 A0A1B0GX51 115 aa1.44□□□□□ -2.18
VPS54-202ENST00000354504 KRTAP16-1A8MUX0 517 aa1.44□□□□□ -2.18
VPS54-202ENST00000354504 TMEM238C9JI98 176 aa1.44□□□□□ -2.18
VPS54-202ENST00000354504 MRPL23Q16540 153 aaKnown RBP1.44□□□□□ -2.18
VPS54-202ENST00000354504 HIGD2BQ4VC39 106 aa1.44□□□□□ -2.18
VPS54-202ENST00000354504 SMIM11BQ8TCY0 68 aa1.44□□□□□ -2.18
VPS54-202ENST00000354504 SND1-IT1Q9HBX3 110 aa1.44□□□□□ -2.18
VPS54-202ENST00000354504 NDUFV3P56181 108 aaKnown RBP1.44□□□□□ -2.18
VPS54-202ENST00000354504 KRTAP10-4P60372 401 aaPredicted RBP1.44□□□□□ -2.18
VPS54-202ENST00000354504 REG3AQ06141 175 aa1.44□□□□□ -2.18
VPS54-202ENST00000354504 COX17Q14061 63 aa1.44□□□□□ -2.18
VPS54-202ENST00000354504 MIR7-3HGQ8N6C7 128 aa1.44□□□□□ -2.18
VPS54-202ENST00000354504 CHCHD10Q8WYQ3 142 aaPredicted RBP1.44□□□□□ -2.18
VPS54-202ENST00000354504 Q9BRP9 147 aa1.44□□□□□ -2.18
VPS54-202ENST00000354504 XAGE1AQ9HD64 81 aa1.44□□□□□ -2.18
VPS54-202ENST00000354504 LRP2P98164 4655 aa1.44□□□□□ -2.18
VPS54-202ENST00000354504 TEX49A0A1B0GTD5 131 aa1.44□□□□□ -2.18
VPS54-202ENST00000354504 C9JAW5 83 aa1.44□□□□□ -2.18
VPS54-202ENST00000354504 COX7A2LO14548 114 aa1.44□□□□□ -2.18
VPS54-202ENST00000354504 COX6CP09669 75 aa1.44□□□□□ -2.18
VPS54-202ENST00000354504 UNQ6190/PRO20217Q6UXQ8 127 aa1.44□□□□□ -2.18
VPS54-202ENST00000354504 TEN1Q86WV5 123 aa1.44□□□□□ -2.18
VPS54-202ENST00000354504 Q8NBF4 154 aa1.44□□□□□ -2.18
VPS54-202ENST00000354504 TRBV10-2A0A0K0K1G8 114 aa1.43□□□□□ -2.18
VPS54-202ENST00000354504 K7ERU9 68 aa1.43□□□□□ -2.18
VPS54-202ENST00000354504 Q6ZR54 194 aa1.43□□□□□ -2.18
VPS54-202ENST00000354504 TRBV7-6A0A0J9YX20 115 aa1.43□□□□□ -2.18
VPS54-202ENST00000354504 SMAGPQ0VAQ4 97 aa1.43□□□□□ -2.18
VPS54-202ENST00000354504 CYSTM1Q9H1C7 97 aa1.43□□□□□ -2.18
VPS54-202ENST00000354504 FAM168BA1KXE4 195 aa1.43□□□□□ -2.18
VPS54-202ENST00000354504 MT-ATP8P03928 68 aa1.43□□□□□ -2.18
VPS54-202ENST00000354504 Q6ZRU5 148 aa1.43□□□□□ -2.18
VPS54-202ENST00000354504 FAM240AA0A1B0GVK7 77 aa1.42□□□□□ -2.18
VPS54-202ENST00000354504 PSCAO43653 123 aa1.42□□□□□ -2.18
VPS54-202ENST00000354504 TRACP01848 142 aa1.42□□□□□ -2.18
VPS54-202ENST00000354504 S100A7L2Q5SY68 101 aa1.42□□□□□ -2.18
VPS54-202ENST00000354504 UBE2DNLQ8IWF7 75 aa1.42□□□□□ -2.18
VPS54-202ENST00000354504 IGLV2-33A0A075B6J2 118 aaPredicted RBP1.42□□□□□ -2.18
VPS54-202ENST00000354504 TRBV20-1A0A075B6N2 111 aa1.42□□□□□ -2.18
VPS54-202ENST00000354504 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.42□□□□□ -2.18
VPS54-202ENST00000354504 TRBV7-4A0A0J9YYF1 115 aa1.42□□□□□ -2.18
VPS54-202ENST00000354504 TRBV7-7A0A0K0K1E9 115 aa1.42□□□□□ -2.18
VPS54-202ENST00000354504 J3QR89 54 aa1.42□□□□□ -2.18
VPS54-202ENST00000354504 DNAL4O96015 105 aa1.42□□□□□ -2.18
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms