RNA–Protein interactions for RNA: ENST00000308271.13

USP48-201, Transcript of ubiquitin specific peptidase 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP48, Length 4,595 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-201ENST00000308271 FLNAP21333 2647 aaKnown RBP12.77□□□□□ -0.36
USP48-201ENST00000308271 RPL37AP61513 92 aaKnown RBP12.77□□□□□ -0.37
USP48-201ENST00000308271 SPAG11AQ6PDA7 123 aa12.77□□□□□ -0.37
USP48-201ENST00000308271 CYP4F30PQ9H0H9 118 aa12.75□□□□□ -0.37
USP48-201ENST00000308271 C15orf56Q8N910 161 aa12.75□□□□□ -0.37
USP48-201ENST00000308271 DNAH10OSP0CZ25 163 aa12.74□□□□□ -0.37
USP48-201ENST00000308271 A8MWP4 228 aa12.74□□□□□ -0.37
USP48-201ENST00000308271 UNC80Q8N2C7 3258 aa12.74□□□□□ -0.37
USP48-201ENST00000308271 C16orf90A8MZG2 172 aa12.73□□□□□ -0.37
USP48-201ENST00000308271 WDFY4Q6ZS81 3184 aa12.72□□□□□ -0.37
USP48-201ENST00000308271 FAM168BA1KXE4 195 aa12.72□□□□□ -0.37
USP48-201ENST00000308271 CYSTM1Q9H1C7 97 aa12.72□□□□□ -0.37
USP48-201ENST00000308271 EPM2AB3EWF7 344 aa12.71□□□□□ -0.37
USP48-201ENST00000308271 DSPP15924 2871 aaKnown RBP12.71□□□□□ -0.38
USP48-201ENST00000308271 MGAQ8IWI9 3026 aa12.7□□□□□ -0.38
USP48-201ENST00000308271 NUPR2A6NF83 97 aa12.7□□□□□ -0.38
USP48-201ENST00000308271 ACYP2P14621 99 aa12.69□□□□□ -0.38
USP48-201ENST00000308271 IGFL1Q6UW32 110 aa12.69□□□□□ -0.38
USP48-201ENST00000308271 OCR1Q9BZK8 76 aa12.69□□□□□ -0.38
USP48-201ENST00000308271 LINC00588Q9Y4M8 146 aa12.68□□□□□ -0.38
USP48-201ENST00000308271 MOBPQ13875 183 aa12.68□□□□□ -0.38
USP48-201ENST00000308271 Q5XG85 94 aa12.68□□□□□ -0.38
USP48-201ENST00000308271 A0A1W2PNM2 257 aa12.67□□□□□ -0.38
USP48-201ENST00000308271 PHF5AQ7RTV0 110 aaKnown RBP12.67□□□□□ -0.38
USP48-201ENST00000308271 COA5Q86WW8 74 aa12.67□□□□□ -0.38
USP48-201ENST00000308271 IGLV5-48A0A075B6I7 105 aa12.66□□□□□ -0.38
USP48-201ENST00000308271 PLA2G2DQ9UNK4 145 aa12.66□□□□□ -0.38
USP48-201ENST00000308271 PRR15Q8IV56 129 aa12.66□□□□□ -0.38
USP48-201ENST00000308271 A0A1B0GU69 56 aa12.65□□□□□ -0.38
USP48-201ENST00000308271 TLX1NBP0CAT3 122 aa12.65□□□□□ -0.38
USP48-201ENST00000308271 STAB1Q9NY15 2570 aa12.63□□□□□ -0.39
USP48-201ENST00000308271 RETNLBQ9BQ08 111 aa12.63□□□□□ -0.39
USP48-201ENST00000308271 BAHCC1Q9P281 2608 aa12.63□□□□□ -0.39
USP48-201ENST00000308271 XIRP2A4UGR9 3374 aa12.6□□□□□ -0.39
USP48-201ENST00000308271 IGLV5-52A0A0A0MRZ9 124 aa12.6□□□□□ -0.39
USP48-201ENST00000308271 CHD6Q8TD26 2715 aa12.6□□□□□ -0.39
USP48-201ENST00000308271 LOC101927531A0A1B0GV80 90 aa12.59□□□□□ -0.39
USP48-201ENST00000308271 MAP1AP78559 2803 aaPredicted RBP12.58□□□□□ -0.4
USP48-201ENST00000308271 VPS13AQ96RL7 3174 aa12.56□□□□□ -0.4
USP48-201ENST00000308271 SPANXA2-OT1Q8N9U9 137 aa12.56□□□□□ -0.4
USP48-201ENST00000308271 ATP11AUNQ6ZP68 121 aa12.56□□□□□ -0.4
USP48-201ENST00000308271 CD164Q04900 197 aa12.55□□□□□ -0.4
USP48-201ENST00000308271 SPINK1P00995 79 aa12.54□□□□□ -0.4
USP48-201ENST00000308271 Q1T7F1 81 aa12.54□□□□□ -0.4
USP48-201ENST00000308271 CHTF8P0CG12 524 aa12.53□□□□□ -0.4
USP48-201ENST00000308271 MRPL34Q9BQ48 92 aaKnown RBP12.53□□□□□ -0.4
USP48-201ENST00000308271 FP248Q71RG6 208 aaPredicted RBP12.52□□□□□ -0.4
USP48-201ENST00000308271 LY6G6CO95867 125 aa12.52□□□□□ -0.41
USP48-201ENST00000308271 IGKV2D-30A0A075B6S6 120 aa12.51□□□□□ -0.41
USP48-201ENST00000308271 A0A0G2JQZ4 141 aa12.51□□□□□ -0.41
USP48-201ENST00000308271 A0A1W2PNN7 141 aa12.51□□□□□ -0.41
USP48-201ENST00000308271 IGKV2-30P06310 120 aa12.51□□□□□ -0.41
USP48-201ENST00000308271 Q8NDZ9 215 aa12.49□□□□□ -0.41
USP48-201ENST00000308271 KRTAP10-3P60369 221 aa12.49□□□□□ -0.41
USP48-201ENST00000308271 OXTP01178 125 aa12.48□□□□□ -0.41
USP48-201ENST00000308271 SPRR4Q96PI1 79 aa12.48□□□□□ -0.41
USP48-201ENST00000308271 C8orf17Q9NRJ1 99 aa12.48□□□□□ -0.41
USP48-201ENST00000308271 COL6A5A8TX70 2615 aa12.47□□□□□ -0.41
USP48-201ENST00000308271 IGLV5-37A0A075B6J1 123 aa12.47□□□□□ -0.41
USP48-201ENST00000308271 NBEAQ8NFP9 2946 aa12.47□□□□□ -0.41
USP48-201ENST00000308271 C8orf87E5RJ46 101 aa12.46□□□□□ -0.41
USP48-201ENST00000308271 DSCR10P59022 87 aa12.46□□□□□ -0.41
USP48-201ENST00000308271 KRTAP24-1Q3LI83 254 aa12.46□□□□□ -0.42
USP48-201ENST00000308271 KTN1-AS1Q86SY8 53 aa12.46□□□□□ -0.42
USP48-201ENST00000308271 C7orf65Q6ZTY9 151 aa12.45□□□□□ -0.42
USP48-201ENST00000308271 MDFIQ99750 246 aa12.44□□□□□ -0.42
USP48-201ENST00000308271 CDH23Q9H251 3354 aa12.44□□□□□ -0.42
USP48-201ENST00000308271 TEX15Q9BXT5 2789 aa12.44□□□□□ -0.42
USP48-201ENST00000308271 FRYQ5TBA9 3013 aa12.43□□□□□ -0.42
USP48-201ENST00000308271 C1orf134Q5TEV5 83 aa12.43□□□□□ -0.42
USP48-201ENST00000308271 KRTAP1-3Q8IUG1 177 aa12.43□□□□□ -0.42
USP48-201ENST00000308271 LINC00313P59037 77 aa12.41□□□□□ -0.42
USP48-201ENST00000308271 NBDYA0A0U1RRE5 68 aa12.4□□□□□ -0.42
USP48-201ENST00000308271 FAM229AH3BQW9 127 aa12.4□□□□□ -0.42
USP48-201ENST00000308271 A0A1B0GVX0 72 aa12.39□□□□□ -0.43
USP48-201ENST00000308271 CR1P17927 2039 aa12.39□□□□□ -0.43
USP48-201ENST00000308271 IGSF10Q6WRI0 2623 aa12.39□□□□□ -0.43
USP48-201ENST00000308271 FAM229BQ4G0N7 80 aa12.38□□□□□ -0.43
USP48-201ENST00000308271 UNC79Q9P2D8 2635 aa12.37□□□□□ -0.43
USP48-201ENST00000308271 AKAP13Q12802 2813 aa12.37□□□□□ -0.43
USP48-201ENST00000308271 LAMA1P25391 3075 aa12.37□□□□□ -0.43
USP48-201ENST00000308271 KRTAP10-11P60412 298 aa12.34□□□□□ -0.43
USP48-201ENST00000308271 DNAH14Q0VDD8 3507 aa12.34□□□□□ -0.43
USP48-201ENST00000308271 CASC10Q5T4H9 136 aa12.33□□□□□ -0.43
USP48-201ENST00000308271 UQCR11O14957 56 aa12.33□□□□□ -0.44
USP48-201ENST00000308271 CDC42SE1Q9NRR8 79 aa12.33□□□□□ -0.44
USP48-201ENST00000308271 SZT2Q5T011 3432 aa12.32□□□□□ -0.44
USP48-201ENST00000308271 GCN1Q92616 2671 aaKnown RBP12.32□□□□□ -0.44
USP48-201ENST00000308271 KRTAP1-1Q07627 177 aa12.32□□□□□ -0.44
USP48-201ENST00000308271 SPACA4Q8TDM5 124 aa12.32□□□□□ -0.44
USP48-201ENST00000308271 RTL8CO15255 209 aa12.31□□□□□ -0.44
USP48-201ENST00000308271 C9orf163Q8N9P6 203 aa12.3□□□□□ -0.44
USP48-201ENST00000308271 VCANP13611 3396 aa12.29□□□□□ -0.44
USP48-201ENST00000308271 CNBPP62633 177 aaKnown RBP12.28□□□□□ -0.44
USP48-201ENST00000308271 CELSR3Q9NYQ7 3312 aa12.27□□□□□ -0.45
USP48-201ENST00000308271 LCA10Q71F78 164 aa12.27□□□□□ -0.45
USP48-201ENST00000308271 NBEAL1Q6ZS30 2694 aa12.26□□□□□ -0.45
USP48-201ENST00000308271 SPRR1AP35321 89 aa12.25□□□□□ -0.45
USP48-201ENST00000308271 IGLV7-46A0A075B6I9 117 aa12.24□□□□□ -0.45
USP48-201ENST00000308271 COL6A3P12111 3177 aa12.23□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 102.5 ms