RNA–Protein interactions for RNA: ENST00000253024.9

TRIM28-201, Transcript of tripartite motif containing 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM28, Length 2,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-201ENST00000253024 SRRM2Q9UQ35 2752 aaKnown RBP13.99□□□□□ -0.17
TRIM28-201ENST00000253024 GVQW2A0A096LPI5 108 aaPredicted RBP13.99□□□□□ -0.17
TRIM28-201ENST00000253024 EGFEM1PQ0D2K5 195 aa13.99□□□□□ -0.17
TRIM28-201ENST00000253024 NKAPP1Q8N9T2 125 aa13.98□□□□□ -0.17
TRIM28-201ENST00000253024 M0R378 163 aa13.98□□□□□ -0.17
TRIM28-201ENST00000253024 J3KT08 172 aa13.97□□□□□ -0.17
TRIM28-201ENST00000253024 CMYA5Q8N3K9 4069 aa13.94□□□□□ -0.18
TRIM28-201ENST00000253024 C7orf33Q8WU49 177 aa13.93□□□□□ -0.18
TRIM28-201ENST00000253024 LOC110117498A0A087WWA1 95 aa13.93□□□□□ -0.18
TRIM28-201ENST00000253024 A0A0G2JQZ4 141 aa13.92□□□□□ -0.18
TRIM28-201ENST00000253024 A0A1W2PNN7 141 aa13.92□□□□□ -0.18
TRIM28-201ENST00000253024 LINC00528Q8N1L1 170 aa13.92□□□□□ -0.18
TRIM28-201ENST00000253024 DNAH10Q8IVF4 4471 aa13.91□□□□□ -0.18
TRIM28-201ENST00000253024 ST20-AS1Q8NBB2 130 aa13.91□□□□□ -0.18
TRIM28-201ENST00000253024 BPY2O14599 106 aa13.89□□□□□ -0.19
TRIM28-201ENST00000253024 ATP5EP2Q5VTU8 51 aa13.89□□□□□ -0.19
TRIM28-201ENST00000253024 LINC00588Q9Y4M8 146 aa13.89□□□□□ -0.19
TRIM28-201ENST00000253024 LINC01556Q5JQF7 62 aa13.88□□□□□ -0.19
TRIM28-201ENST00000253024 TRBV7-4A0A0J9YYF1 115 aa13.87□□□□□ -0.19
TRIM28-201ENST00000253024 OXTP01178 125 aa13.87□□□□□ -0.19
TRIM28-201ENST00000253024 RMI2Q96E14 147 aa13.87□□□□□ -0.19
TRIM28-201ENST00000253024 TM2D3Q9BRN9 247 aa13.87□□□□□ -0.19
TRIM28-201ENST00000253024 WIPF1O43516 503 aa13.86□□□□□ -0.19
TRIM28-201ENST00000253024 C5orf47Q569G3 176 aa13.86□□□□□ -0.19
TRIM28-201ENST00000253024 COL7A1Q02388 2944 aa13.85□□□□□ -0.19
TRIM28-201ENST00000253024 IGKV2-24A0A0C4DH68 120 aa13.85□□□□□ -0.19
TRIM28-201ENST00000253024 DPH3Q96FX2 82 aa13.84□□□□□ -0.19
TRIM28-201ENST00000253024 Q8N377 158 aa13.82□□□□□ -0.2
TRIM28-201ENST00000253024 H3BNG1 76 aa13.81□□□□□ -0.2
TRIM28-201ENST00000253024 NREPQ16612 68 aa13.8□□□□□ -0.2
TRIM28-201ENST00000253024 ERC2-IT1O76042 136 aa13.8□□□□□ -0.2
TRIM28-201ENST00000253024 UBE2BP63146 152 aa13.79□□□□□ -0.2
TRIM28-201ENST00000253024 C4orf26Q17RF5 130 aa13.79□□□□□ -0.2
TRIM28-201ENST00000253024 Q9BRP9 147 aa13.79□□□□□ -0.2
TRIM28-201ENST00000253024 ETDCA0A1B0GVM5 59 aa13.78□□□□□ -0.2
TRIM28-201ENST00000253024 IGLV2-33A0A075B6J2 118 aaPredicted RBP13.78□□□□□ -0.2
TRIM28-201ENST00000253024 TMEM258P61165 79 aa13.78□□□□□ -0.2
TRIM28-201ENST00000253024 KRTAP7-1Q8IUC3 87 aa13.77□□□□□ -0.21
TRIM28-201ENST00000253024 PDE6GP18545 87 aa13.76□□□□□ -0.21
TRIM28-201ENST00000253024 HRCT1Q6UXD1 115 aa13.75□□□□□ -0.21
TRIM28-201ENST00000253024 DEFB116Q30KQ4 102 aa13.74□□□□□ -0.21
TRIM28-201ENST00000253024 HUWE1Q7Z6Z7 4374 aaKnown RBP13.74□□□□□ -0.21
TRIM28-201ENST00000253024 DNAH10OSP0CZ25 163 aa13.74□□□□□ -0.21
TRIM28-201ENST00000253024 KCNQ1DNQ9H478 68 aa13.73□□□□□ -0.21
TRIM28-201ENST00000253024 F8WEM9 126 aa13.72□□□□□ -0.21
TRIM28-201ENST00000253024 TRAV7A0A075B6U4 112 aa13.72□□□□□ -0.21
TRIM28-201ENST00000253024 CXCL6P80162 114 aa13.71□□□□□ -0.21
TRIM28-201ENST00000253024 PRLHP81277 87 aa13.71□□□□□ -0.21
TRIM28-201ENST00000253024 TRBV7-6A0A0J9YX20 115 aa13.71□□□□□ -0.22
TRIM28-201ENST00000253024 RPS28P62857 69 aaKnown RBP13.7□□□□□ -0.22
TRIM28-201ENST00000253024 Q6ZRX8 168 aa13.69□□□□□ -0.22
TRIM28-201ENST00000253024 H7BZZ5 65 aa13.68□□□□□ -0.22
TRIM28-201ENST00000253024 IGLV1-50A0A075B6I6 118 aa13.67□□□□□ -0.22
TRIM28-201ENST00000253024 FAM236DA0A1B0GTK5 79 aa13.67□□□□□ -0.22
TRIM28-201ENST00000253024 K7EIL1 84 aa13.67□□□□□ -0.22
TRIM28-201ENST00000253024 FAM236CP0DP71 79 aa13.67□□□□□ -0.22
TRIM28-201ENST00000253024 KRTAP1-5Q9BYS1 174 aa13.67□□□□□ -0.22
TRIM28-201ENST00000253024 C1orf137Q5JT78 98 aa13.67□□□□□ -0.22
TRIM28-201ENST00000253024 MRPL55Q7Z7F7 128 aaKnown RBP13.67□□□□□ -0.22
TRIM28-201ENST00000253024 A0A1W2PNM2 257 aa13.66□□□□□ -0.22
TRIM28-201ENST00000253024 HIGD2AQ9BW72 106 aa13.66□□□□□ -0.22
TRIM28-201ENST00000253024 IGKV4-1P06312 121 aa13.65□□□□□ -0.22
TRIM28-201ENST00000253024 CHTF8P0CG12 524 aa13.65□□□□□ -0.22
TRIM28-201ENST00000253024 FAM30AQ9NZY2 134 aa13.65□□□□□ -0.22
TRIM28-201ENST00000253024 PSCAO43653 123 aa13.64□□□□□ -0.23
TRIM28-201ENST00000253024 DNAH9Q9NYC9 4486 aa13.64□□□□□ -0.23
TRIM28-201ENST00000253024 A0A096LNI7 61 aa13.62□□□□□ -0.23
TRIM28-201ENST00000253024 H3BQ85 93 aa13.62□□□□□ -0.23
TRIM28-201ENST00000253024 FUSP35637 526 aaKnown RBP eCLIP13.62□□□□□ -0.233e-7■■□□□ 14.5
TRIM28-201ENST00000253024 DNAH7Q8WXX0 4024 aa13.6□□□□□ -0.23
TRIM28-201ENST00000253024 SMIM29Q86T20 159 aa13.59□□□□□ -0.23
TRIM28-201ENST00000253024 DNAH3Q8TD57 4116 aa13.59□□□□□ -0.23
TRIM28-201ENST00000253024 KRTAP4-16G5E9R7 235 aaPredicted RBP13.58□□□□□ -0.24
TRIM28-201ENST00000253024 Q5XG85 94 aa13.58□□□□□ -0.24
TRIM28-201ENST00000253024 DHRS4-AS1Q9P1J3 65 aa13.57□□□□□ -0.24
TRIM28-201ENST00000253024 UBE2DNLQ8IWF7 75 aa13.57□□□□□ -0.24
TRIM28-201ENST00000253024 DNAH1Q9P2D7 4330 aa13.56□□□□□ -0.24
TRIM28-201ENST00000253024 TMEM254Q8TBM7 123 aa13.56□□□□□ -0.24
TRIM28-201ENST00000253024 REG3GQ6UW15 175 aa13.56□□□□□ -0.24
TRIM28-201ENST00000253024 IGLV5-48A0A075B6I7 105 aa13.53□□□□□ -0.24
TRIM28-201ENST00000253024 PRYO14603 147 aa13.53□□□□□ -0.24
TRIM28-201ENST00000253024 K7EQZ3 153 aa13.53□□□□□ -0.24
TRIM28-201ENST00000253024 KLKP1Q107X0 134 aa13.52□□□□□ -0.24
TRIM28-201ENST00000253024 TLX1NBP0CAT3 122 aa13.52□□□□□ -0.25
TRIM28-201ENST00000253024 PHF5AQ7RTV0 110 aaKnown RBP13.52□□□□□ -0.25
TRIM28-201ENST00000253024 KRTAP11-1Q8IUC1 163 aa13.52□□□□□ -0.25
TRIM28-201ENST00000253024 LINC00476Q8WZB0 136 aa13.51□□□□□ -0.25
TRIM28-201ENST00000253024 LINC00474Q9P2X8 69 aa13.5□□□□□ -0.25
TRIM28-201ENST00000253024 RPL37AP61513 92 aaKnown RBP13.49□□□□□ -0.25
TRIM28-201ENST00000253024 Q8NBF4 154 aa13.49□□□□□ -0.25
TRIM28-201ENST00000253024 PRR4Q16378 134 aa13.48□□□□□ -0.25
TRIM28-201ENST00000253024 SPRR1AP35321 89 aa13.48□□□□□ -0.25
TRIM28-201ENST00000253024 LRCOL1A6NCL2 159 aa13.47□□□□□ -0.25
TRIM28-201ENST00000253024 WFDC13Q8IUB5 93 aa13.47□□□□□ -0.25
TRIM28-201ENST00000253024 A0A087WSZ3 146 aa13.46□□□□□ -0.25
TRIM28-201ENST00000253024 OCR1Q9BZK8 76 aa13.45□□□□□ -0.26
TRIM28-201ENST00000253024 TNP2Q05952 138 aa13.44□□□□□ -0.26
TRIM28-201ENST00000253024 DSCR10P59022 87 aa13.44□□□□□ -0.26
TRIM28-201ENST00000253024 F8WDY8 70 aa13.43□□□□□ -0.26
TRIM28-201ENST00000253024 IGFL1Q6UW32 110 aa13.43□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms