RNA–Protein interactions for RNA: ENST00000251722.10

USP40-201, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene USP40, Length 5,692 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-201ENST00000251722 CNBPP62633 177 aaKnown RBP8.43□□□□□ -1.06
USP40-201ENST00000251722 ZFYVE26Q68DK2 2539 aa8.43□□□□□ -1.06
USP40-201ENST00000251722 USP9XQ93008 2570 aaPredicted RBP8.43□□□□□ -1.06
USP40-201ENST00000251722 KRTAP1-1Q07627 177 aa8.43□□□□□ -1.06
USP40-201ENST00000251722 LINC00304Q8N9R0 145 aa8.43□□□□□ -1.06
USP40-201ENST00000251722 ASB16-AS1Q495Z4 193 aa8.42□□□□□ -1.06
USP40-201ENST00000251722 ZNF575Q86XF7 245 aa8.41□□□□□ -1.06
USP40-201ENST00000251722 CHTF8P0CG12 524 aa8.41□□□□□ -1.06
USP40-201ENST00000251722 CYSTM1Q9H1C7 97 aa8.41□□□□□ -1.06
USP40-201ENST00000251722 GIG44P09565 113 aaPredicted RBP8.4□□□□□ -1.06
USP40-201ENST00000251722 CRIPTQ9P021 101 aa8.4□□□□□ -1.06
USP40-201ENST00000251722 C15orf56Q8N910 161 aa8.4□□□□□ -1.07
USP40-201ENST00000251722 FAM229BQ4G0N7 80 aa8.39□□□□□ -1.07
USP40-201ENST00000251722 Q96NJ1 140 aa8.39□□□□□ -1.07
USP40-201ENST00000251722 LINC00528Q8N1L1 170 aa8.39□□□□□ -1.07
USP40-201ENST00000251722 CEP295Q9C0D2 2601 aa8.39□□□□□ -1.07
USP40-201ENST00000251722 OCR1Q9BZK8 76 aa8.38□□□□□ -1.07
USP40-201ENST00000251722 FN1P02751 2386 aaKnown RBP8.38□□□□□ -1.07
USP40-201ENST00000251722 MRPL34Q9BQ48 92 aaKnown RBP8.38□□□□□ -1.07
USP40-201ENST00000251722 K7EQZ3 153 aa8.37□□□□□ -1.07
USP40-201ENST00000251722 Q5VV11 94 aa8.37□□□□□ -1.07
USP40-201ENST00000251722 Q8N9P0 234 aaPredicted RBP8.35□□□□□ -1.07
USP40-201ENST00000251722 EP400Q96L91 3159 aa8.34□□□□□ -1.07
USP40-201ENST00000251722 CHD8Q9HCK8 2581 aa8.34□□□□□ -1.07
USP40-201ENST00000251722 IGLV7-43P04211 117 aa8.34□□□□□ -1.07
USP40-201ENST00000251722 LINC01558Q9Y6Z2 57 aa8.34□□□□□ -1.07
USP40-201ENST00000251722 PRAC1Q96KF2 57 aa8.34□□□□□ -1.07
USP40-201ENST00000251722 IGLV5-37A0A075B6J1 123 aa8.34□□□□□ -1.08
USP40-201ENST00000251722 EIF4EBP3O60516 100 aaPredicted RBP8.33□□□□□ -1.08
USP40-201ENST00000251722 ANKRD17O75179 2603 aaKnown RBP8.32□□□□□ -1.08
USP40-201ENST00000251722 MUC4Q99102 2169 aa8.32□□□□□ -1.08
USP40-201ENST00000251722 FAM168BA1KXE4 195 aa8.32□□□□□ -1.08
USP40-201ENST00000251722 IGLV8-61A0A075B6I0 122 aa8.32□□□□□ -1.08
USP40-201ENST00000251722 A0A0A0MQY5 61 aa8.31□□□□□ -1.08
USP40-201ENST00000251722 DMAC1Q96GE9 116 aa8.31□□□□□ -1.08
USP40-201ENST00000251722 USP9YO00507 2555 aaPredicted RBP8.3□□□□□ -1.08
USP40-201ENST00000251722 PKD1L2Q7Z442 2459 aa8.3□□□□□ -1.08
USP40-201ENST00000251722 COX6B2Q6YFQ2 88 aa8.29□□□□□ -1.08
USP40-201ENST00000251722 C9orf129Q5T035 196 aaKnown RBP8.29□□□□□ -1.08
USP40-201ENST00000251722 TLN2Q9Y4G6 2542 aa8.28□□□□□ -1.08
USP40-201ENST00000251722 IGFL1Q6UW32 110 aa8.28□□□□□ -1.08
USP40-201ENST00000251722 A0A1B0GVX0 72 aa8.28□□□□□ -1.08
USP40-201ENST00000251722 C8orf17Q9NRJ1 99 aa8.27□□□□□ -1.09
USP40-201ENST00000251722 SPTBN4Q9H254 2564 aa8.27□□□□□ -1.09
USP40-201ENST00000251722 KRTAP16-1A8MUX0 517 aa8.26□□□□□ -1.09
USP40-201ENST00000251722 SPRR4Q96PI1 79 aa8.25□□□□□ -1.09
USP40-201ENST00000251722 LUZP6Q538Z0 58 aa8.25□□□□□ -1.09
USP40-201ENST00000251722 CSAG1Q6PB30 78 aa8.24□□□□□ -1.09
USP40-201ENST00000251722 PRR26Q8N8Z3 221 aa8.23□□□□□ -1.09
USP40-201ENST00000251722 IGLV7-46A0A075B6I9 117 aa8.23□□□□□ -1.09
USP40-201ENST00000251722 PSORS1C2Q9UIG4 136 aa8.22□□□□□ -1.09
USP40-201ENST00000251722 F8P00451 2351 aa8.21□□□□□ -1.1
USP40-201ENST00000251722 Q8N377 158 aa8.21□□□□□ -1.1
USP40-201ENST00000251722 FASNP49327 2511 aaKnown RBP8.19□□□□□ -1.1
USP40-201ENST00000251722 CASC10Q5T4H9 136 aa8.18□□□□□ -1.1
USP40-201ENST00000251722 DSCR10P59022 87 aa8.17□□□□□ -1.1
USP40-201ENST00000251722 A0A1W2PNN7 141 aa8.16□□□□□ -1.1
USP40-201ENST00000251722 A6NN06 94 aa8.15□□□□□ -1.1
USP40-201ENST00000251722 MTORP42345 2549 aa8.13□□□□□ -1.11
USP40-201ENST00000251722 SRCAPQ6ZRS2 3230 aa8.13□□□□□ -1.11
USP40-201ENST00000251722 SMR3BP02814 79 aaPredicted RBP8.13□□□□□ -1.11
USP40-201ENST00000251722 WDR87Q6ZQQ6 2873 aa8.12□□□□□ -1.11
USP40-201ENST00000251722 IGLV5-48A0A075B6I7 105 aa8.1□□□□□ -1.11
USP40-201ENST00000251722 TNP2Q05952 138 aa8.09□□□□□ -1.12
USP40-201ENST00000251722 FAM104AQ969W3 186 aa8.08□□□□□ -1.12
USP40-201ENST00000251722 SPINK7P58062 85 aa8.08□□□□□ -1.12
USP40-201ENST00000251722 PLAC8Q9NZF1 115 aa8.08□□□□□ -1.12
USP40-201ENST00000251722 C9orf92A6NGG3 77 aa8.07□□□□□ -1.12
USP40-201ENST00000251722 ACANP16112 2415 aa8.04□□□□□ -1.12
USP40-201ENST00000251722 A0A087X002 238 aa8.04□□□□□ -1.12
USP40-201ENST00000251722 EPG5Q9HCE0 2579 aa8.03□□□□□ -1.12
USP40-201ENST00000251722 SETD2Q9BYW2 2564 aaPredicted RBP8.03□□□□□ -1.12
USP40-201ENST00000251722 A0A1W2PNM2 257 aa8.02□□□□□ -1.13
USP40-201ENST00000251722 POLQO75417 2590 aa8.02□□□□□ -1.13
USP40-201ENST00000251722 Q6ZSA8 131 aa8.02□□□□□ -1.13
USP40-201ENST00000251722 SEC61BP60468 96 aaKnown RBP8□□□□□ -1.13
USP40-201ENST00000251722 LCE6AA0A183 80 aa7.98□□□□□ -1.13
USP40-201ENST00000251722 ANAPC11Q9NYG5 84 aa7.96□□□□□ -1.14
USP40-201ENST00000251722 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP7.94□□□□□ -1.14
USP40-201ENST00000251722 HRES1P13985 223 aa7.93□□□□□ -1.14
USP40-201ENST00000251722 SPRR1BP22528 89 aa7.93□□□□□ -1.14
USP40-201ENST00000251722 SPRR1AP35321 89 aa7.93□□□□□ -1.14
USP40-201ENST00000251722 A0A1B0GU33 70 aa7.91□□□□□ -1.14
USP40-201ENST00000251722 CENPFP49454 3210 aa7.91□□□□□ -1.14
USP40-201ENST00000251722 CR1P17927 2039 aa7.88□□□□□ -1.15
USP40-201ENST00000251722 KRTAP21-3Q3LHN1 58 aa7.87□□□□□ -1.15
USP40-201ENST00000251722 SPATA8Q6RVD6 105 aa7.85□□□□□ -1.15
USP40-201ENST00000251722 CAMK2N1Q7Z7J9 78 aa7.85□□□□□ -1.15
USP40-201ENST00000251722 KRTAP25-1Q3LHN0 102 aa7.85□□□□□ -1.15
USP40-201ENST00000251722 ZCCHC13Q8WW36 166 aaKnown RBP7.85□□□□□ -1.15
USP40-201ENST00000251722 A0A0G2JQZ4 141 aa7.83□□□□□ -1.16
USP40-201ENST00000251722 HECTD1Q9ULT8 2610 aa7.83□□□□□ -1.16
USP40-201ENST00000251722 ROMO1P60602 79 aa7.82□□□□□ -1.16
USP40-201ENST00000251722 Q5VSD8 79 aa7.79□□□□□ -1.16
USP40-201ENST00000251722 FLNBO75369 2602 aaKnown RBP7.78□□□□□ -1.16
USP40-201ENST00000251722 Q8N1X5 172 aa7.77□□□□□ -1.17
USP40-201ENST00000251722 M0R2T5 61 aa7.75□□□□□ -1.17
USP40-201ENST00000251722 MMP24-AS1A0A0U1RRL7 71 aa7.74□□□□□ -1.17
USP40-201ENST00000251722 LINC00483Q53H64 154 aa7.74□□□□□ -1.17
USP40-201ENST00000251722 KRTAP26-1Q6PEX3 210 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 192.4 ms