RNA–Protein interactions for RNA: ENST00000225964.9

COL1A1-201, Transcript of collagen type I alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL1A1, Length 6,727 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-201ENST00000225964 C2CD3Q4AC94 2353 aa8.63□□□□□ -1.03
COL1A1-201ENST00000225964 RPS28P62857 69 aaKnown RBP8.63□□□□□ -1.03
COL1A1-201ENST00000225964 PRR34Q9NV39 138 aa8.63□□□□□ -1.03
COL1A1-201ENST00000225964 C9orf163Q8N9P6 203 aa8.62□□□□□ -1.03
COL1A1-201ENST00000225964 KLK9Q2XQG4 91 aa8.61□□□□□ -1.03
COL1A1-201ENST00000225964 GOLGB1Q14789 3259 aaKnown RBP8.61□□□□□ -1.03
COL1A1-201ENST00000225964 ERC2-IT1O76042 136 aa8.61□□□□□ -1.03
COL1A1-201ENST00000225964 PLA2G2DQ9UNK4 145 aa8.6□□□□□ -1.03
COL1A1-201ENST00000225964 TLX1NBP0CAT3 122 aa8.6□□□□□ -1.03
COL1A1-201ENST00000225964 CASC10Q5T4H9 136 aa8.6□□□□□ -1.03
COL1A1-201ENST00000225964 Q8N1X5 172 aa8.59□□□□□ -1.03
COL1A1-201ENST00000225964 EP400Q96L91 3159 aa8.59□□□□□ -1.03
COL1A1-201ENST00000225964 CYP4F30PQ9H0H9 118 aa8.59□□□□□ -1.03
COL1A1-201ENST00000225964 SPRR4Q96PI1 79 aa8.58□□□□□ -1.04
COL1A1-201ENST00000225964 IGLV5-48A0A075B6I7 105 aa8.57□□□□□ -1.04
COL1A1-201ENST00000225964 GIG44P09565 113 aaPredicted RBP8.57□□□□□ -1.04
COL1A1-201ENST00000225964 ZNF575Q86XF7 245 aa8.56□□□□□ -1.04
COL1A1-201ENST00000225964 A0A096LNT2 108 aa8.55□□□□□ -1.04
COL1A1-201ENST00000225964 Q6ZSA8 131 aa8.54□□□□□ -1.04
COL1A1-201ENST00000225964 FASNP49327 2511 aaKnown RBP8.54□□□□□ -1.04
COL1A1-201ENST00000225964 M0R2T5 61 aa8.54□□□□□ -1.04
COL1A1-201ENST00000225964 EIF4EBP3O60516 100 aaPredicted RBP8.54□□□□□ -1.04
COL1A1-201ENST00000225964 LINC00612Q8N6U2 182 aa8.51□□□□□ -1.05
COL1A1-201ENST00000225964 CDC42SE1Q9NRR8 79 aa8.51□□□□□ -1.05
COL1A1-201ENST00000225964 CNBPP62633 177 aaKnown RBP8.51□□□□□ -1.05
COL1A1-201ENST00000225964 FAM104AQ969W3 186 aa8.51□□□□□ -1.05
COL1A1-201ENST00000225964 ABCA12Q86UK0 2595 aa8.49□□□□□ -1.05
COL1A1-201ENST00000225964 FN1P02751 2386 aaKnown RBP8.49□□□□□ -1.05
COL1A1-201ENST00000225964 TNP2Q05952 138 aa8.48□□□□□ -1.05
COL1A1-201ENST00000225964 TLN1Q9Y490 2541 aaKnown RBP8.48□□□□□ -1.05
COL1A1-201ENST00000225964 IGLV7-46A0A075B6I9 117 aa8.47□□□□□ -1.05
COL1A1-201ENST00000225964 PRR26Q8N8Z3 221 aa8.44□□□□□ -1.06
COL1A1-201ENST00000225964 MYO9AB2RTY4 2548 aa8.44□□□□□ -1.06
COL1A1-201ENST00000225964 KRTAP1-3Q8IUG1 177 aa8.44□□□□□ -1.06
COL1A1-201ENST00000225964 A0A1W2PNM2 257 aa8.42□□□□□ -1.06
COL1A1-201ENST00000225964 CAMK2N1Q7Z7J9 78 aa8.41□□□□□ -1.06
COL1A1-201ENST00000225964 WDR87Q6ZQQ6 2873 aa8.41□□□□□ -1.06
COL1A1-201ENST00000225964 KLKP1Q107X0 134 aa8.4□□□□□ -1.06
COL1A1-201ENST00000225964 ANKRD17O75179 2603 aaKnown RBP8.39□□□□□ -1.07
COL1A1-201ENST00000225964 SPTBN4Q9H254 2564 aa8.38□□□□□ -1.07
COL1A1-201ENST00000225964 POLQO75417 2590 aa8.37□□□□□ -1.07
COL1A1-201ENST00000225964 KRTAP1-1Q07627 177 aa8.37□□□□□ -1.07
COL1A1-201ENST00000225964 AFDN-AS1Q9Y6Z5 254 aaPredicted RBP8.36□□□□□ -1.07
COL1A1-201ENST00000225964 LUZP6Q538Z0 58 aa8.35□□□□□ -1.07
COL1A1-201ENST00000225964 H7BZZ5 65 aa8.34□□□□□ -1.07
COL1A1-201ENST00000225964 LINC00483Q53H64 154 aa8.34□□□□□ -1.07
COL1A1-201ENST00000225964 CD164Q04900 197 aa8.34□□□□□ -1.07
COL1A1-201ENST00000225964 F8P00451 2351 aa8.34□□□□□ -1.07
COL1A1-201ENST00000225964 SPANXA2-OT1Q8N9U9 137 aa8.34□□□□□ -1.07
COL1A1-201ENST00000225964 TLN2Q9Y4G6 2542 aa8.33□□□□□ -1.08
COL1A1-201ENST00000225964 MTORP42345 2549 aa8.31□□□□□ -1.08
COL1A1-201ENST00000225964 KTN1-AS1Q86SY8 53 aa8.31□□□□□ -1.08
COL1A1-201ENST00000225964 S4R3F8 94 aa8.3□□□□□ -1.08
COL1A1-201ENST00000225964 USP9XQ93008 2570 aaPredicted RBP8.3□□□□□ -1.08
COL1A1-201ENST00000225964 ANKRD11Q6UB99 2663 aaPredicted RBP8.3□□□□□ -1.08
COL1A1-201ENST00000225964 LCA10Q71F78 164 aa8.29□□□□□ -1.08
COL1A1-201ENST00000225964 CENPFP49454 3210 aa8.28□□□□□ -1.08
COL1A1-201ENST00000225964 WIPF1O43516 503 aa8.27□□□□□ -1.09
COL1A1-201ENST00000225964 A0A1B0GU33 70 aa8.25□□□□□ -1.09
COL1A1-201ENST00000225964 Q1T7F1 81 aa8.24□□□□□ -1.09
COL1A1-201ENST00000225964 HRES1P13985 223 aa8.24□□□□□ -1.09
COL1A1-201ENST00000225964 FAM229BQ4G0N7 80 aa8.23□□□□□ -1.09
COL1A1-201ENST00000225964 SETD2Q9BYW2 2564 aaPredicted RBP8.22□□□□□ -1.09
COL1A1-201ENST00000225964 ZCCHC13Q8WW36 166 aaKnown RBP8.22□□□□□ -1.09
COL1A1-201ENST00000225964 UTRNP46939 3433 aa8.21□□□□□ -1.09
COL1A1-201ENST00000225964 CSAG1Q6PB30 78 aa8.2□□□□□ -1.1
COL1A1-201ENST00000225964 PLAC8Q9NZF1 115 aa8.19□□□□□ -1.1
COL1A1-201ENST00000225964 CR1P17927 2039 aa8.19□□□□□ -1.1
COL1A1-201ENST00000225964 Q5VSD8 79 aa8.18□□□□□ -1.1
COL1A1-201ENST00000225964 CEP295Q9C0D2 2601 aa8.16□□□□□ -1.1
COL1A1-201ENST00000225964 PCNTO95613 3336 aa8.16□□□□□ -1.1
COL1A1-201ENST00000225964 ACANP16112 2415 aa8.16□□□□□ -1.1
COL1A1-201ENST00000225964 OCR1Q9BZK8 76 aa8.16□□□□□ -1.1
COL1A1-201ENST00000225964 FLNBO75369 2602 aaKnown RBP8.15□□□□□ -1.1
COL1A1-201ENST00000225964 SEC61BP60468 96 aaKnown RBP8.13□□□□□ -1.11
COL1A1-201ENST00000225964 DMAC1Q96GE9 116 aa8.12□□□□□ -1.11
COL1A1-201ENST00000225964 Q8N9P0 234 aaPredicted RBP8.11□□□□□ -1.11
COL1A1-201ENST00000225964 MMP24-AS1A0A0U1RRL7 71 aa8.1□□□□□ -1.11
COL1A1-201ENST00000225964 R4GN34 69 aa8.1□□□□□ -1.11
COL1A1-201ENST00000225964 PKD1L2Q7Z442 2459 aa8.09□□□□□ -1.11
COL1A1-201ENST00000225964 EPG5Q9HCE0 2579 aa8.08□□□□□ -1.12
COL1A1-201ENST00000225964 HECTD1Q9ULT8 2610 aa8.07□□□□□ -1.12
COL1A1-201ENST00000225964 Q5W150 140 aa8.07□□□□□ -1.12
COL1A1-201ENST00000225964 SPINK7P58062 85 aa8.06□□□□□ -1.12
COL1A1-201ENST00000225964 Q75L30 129 aa8.04□□□□□ -1.12
COL1A1-201ENST00000225964 USP9YO00507 2555 aaPredicted RBP8.02□□□□□ -1.13
COL1A1-201ENST00000225964 LCE6AA0A183 80 aa8.02□□□□□ -1.13
COL1A1-201ENST00000225964 KRTAP10-1P60331 282 aa8.01□□□□□ -1.13
COL1A1-201ENST00000225964 Q8NDZ9 215 aa7.99□□□□□ -1.13
COL1A1-201ENST00000225964 KRTAP10-2P60368 255 aa7.98□□□□□ -1.13
COL1A1-201ENST00000225964 PRAC1Q96KF2 57 aa7.98□□□□□ -1.13
COL1A1-201ENST00000225964 LINC01558Q9Y6Z2 57 aa7.98□□□□□ -1.13
COL1A1-201ENST00000225964 SPRR1AP35321 89 aa7.97□□□□□ -1.13
COL1A1-201ENST00000225964 M0QZ58 72 aa7.96□□□□□ -1.13
COL1A1-201ENST00000225964 KRTAP1-5Q9BYS1 174 aa7.96□□□□□ -1.14
COL1A1-201ENST00000225964 DNAH12Q6ZR08 3092 aa7.95□□□□□ -1.14
COL1A1-201ENST00000225964 PLAC4Q8WY50 150 aa7.95□□□□□ -1.14
COL1A1-201ENST00000225964 LINC00472Q9H8W2 130 aa7.93□□□□□ -1.14
COL1A1-201ENST00000225964 MGAM2Q2M2H8 2515 aa7.92□□□□□ -1.14
COL1A1-201ENST00000225964 H3BS24 57 aa7.91□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms