RNA–Protein interactions for RNA: ENST00000636212.1

CLN6-213, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 1,053 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-213ENST00000636212 IFI27L1Q96BM0 104 aa11.33□□□□□ -0.6
CLN6-213ENST00000636212 ZNF625Q96I27 306 aaPredicted RBP11.33□□□□□ -0.6
CLN6-213ENST00000636212 HIST1H2BNQ99877 126 aa11.33□□□□□ -0.6
CLN6-213ENST00000636212 HIST1H2BMQ99879 126 aa11.33□□□□□ -0.6
CLN6-213ENST00000636212 SND1-IT1Q9HBX3 110 aa11.33□□□□□ -0.6
CLN6-213ENST00000636212 FAM19A2Q8N3H0 131 aa11.32□□□□□ -0.6
CLN6-213ENST00000636212 IGKV2-28A0A075B6P5 120 aa11.31□□□□□ -0.6
CLN6-213ENST00000636212 TRAV12-1A0A0B4J245 112 aa11.31□□□□□ -0.6
CLN6-213ENST00000636212 IGKV2D-28P01615 120 aa11.31□□□□□ -0.6
CLN6-213ENST00000636212 LEPROTL1O95214 131 aa11.3□□□□□ -0.6
CLN6-213ENST00000636212 CRYGAP11844 174 aa11.29□□□□□ -0.6
CLN6-213ENST00000636212 LINC00158P58513 81 aa11.29□□□□□ -0.6
CLN6-213ENST00000636212 VPREB1P12018 145 aa11.28□□□□□ -0.6
CLN6-213ENST00000636212 HSPB8Q9UJY1 196 aa11.28□□□□□ -0.6
CLN6-213ENST00000636212 LRP2P98164 4655 aa11.27□□□□□ -0.6
CLN6-213ENST00000636212 TMEM223A0PJW6 202 aa11.26□□□□□ -0.61
CLN6-213ENST00000636212 TYMSOSQ8TAI1 123 aa11.26□□□□□ -0.61
CLN6-213ENST00000636212 FAM19A1Q7Z5A9 133 aa11.25□□□□□ -0.61
CLN6-213ENST00000636212 PRR4Q16378 134 aa11.24□□□□□ -0.61
CLN6-213ENST00000636212 TMEM126AQ9H061 195 aa11.24□□□□□ -0.61
CLN6-213ENST00000636212 MEIG1Q5JSS6 88 aa11.23□□□□□ -0.61
CLN6-213ENST00000636212 COA6Q5JTJ3 125 aaKnown RBP11.23□□□□□ -0.61
CLN6-213ENST00000636212 KRTAP13-1Q8IUC0 172 aa11.23□□□□□ -0.61
CLN6-213ENST00000636212 A0A087X002 238 aa11.22□□□□□ -0.61
CLN6-213ENST00000636212 A0A0U1RRA0 63 aa11.22□□□□□ -0.61
CLN6-213ENST00000636212 LINC00587B1AMM8 73 aa11.22□□□□□ -0.61
CLN6-213ENST00000636212 HERV-K104P63124 156 aa11.22□□□□□ -0.61
CLN6-213ENST00000636212 TMEM238C9JI98 176 aa11.21□□□□□ -0.61
CLN6-213ENST00000636212 H0Y8G0 127 aa11.21□□□□□ -0.61
CLN6-213ENST00000636212 TSPAN13O95857 204 aa11.21□□□□□ -0.61
CLN6-213ENST00000636212 FABP4P15090 132 aa11.21□□□□□ -0.61
CLN6-213ENST00000636212 PRLHP81277 87 aa11.21□□□□□ -0.61
CLN6-213ENST00000636212 FAM229BQ4G0N7 80 aa11.21□□□□□ -0.61
CLN6-213ENST00000636212 M0R378 163 aa11.19□□□□□ -0.62
CLN6-213ENST00000636212 IGKV2D-26A0A0A0MRZ7 120 aa11.18□□□□□ -0.62
CLN6-213ENST00000636212 MYMXA0A1B0GTQ4 84 aa11.18□□□□□ -0.62
CLN6-213ENST00000636212 SMIM13P0DJ93 91 aa11.18□□□□□ -0.62
CLN6-213ENST00000636212 PLNP26678 52 aa11.18□□□□□ -0.62
CLN6-213ENST00000636212 MAP1LC3CQ9BXW4 147 aa11.18□□□□□ -0.62
CLN6-213ENST00000636212 ANAPC11Q9NYG5 84 aa11.18□□□□□ -0.62
CLN6-213ENST00000636212 NDUFA12Q9UI09 145 aa11.17□□□□□ -0.62
CLN6-213ENST00000636212 BOD1L2Q8IYS8 172 aa11.16□□□□□ -0.62
CLN6-213ENST00000636212 Q8NDZ9 215 aa11.16□□□□□ -0.62
CLN6-213ENST00000636212 DPM2O94777 84 aa11.15□□□□□ -0.62
CLN6-213ENST00000636212 MIR7-3HGQ8N6C7 128 aa11.15□□□□□ -0.62
CLN6-213ENST00000636212 S100A12P80511 92 aa11.14□□□□□ -0.63
CLN6-213ENST00000636212 HIGD2AQ9BW72 106 aa11.14□□□□□ -0.63
CLN6-213ENST00000636212 SYS1-DBNDD2H3BUS1 97 aa11.13□□□□□ -0.63
CLN6-213ENST00000636212 HERVK_113P61574 105 aa11.13□□□□□ -0.63
CLN6-213ENST00000636212 PLEKHB2Q96CS7 222 aa11.13□□□□□ -0.63
CLN6-213ENST00000636212 KRTAP13-2Q52LG2 175 aa11.12□□□□□ -0.63
CLN6-213ENST00000636212 LINC00304Q8N9R0 145 aa11.12□□□□□ -0.63
CLN6-213ENST00000636212 PRYO14603 147 aa11.11□□□□□ -0.63
CLN6-213ENST00000636212 NCR3O14931 201 aa11.11□□□□□ -0.63
CLN6-213ENST00000636212 LEPROTO15243 131 aa11.11□□□□□ -0.63
CLN6-213ENST00000636212 IGKCP01834 107 aa11.11□□□□□ -0.63
CLN6-213ENST00000636212 PET117Q6UWS5 81 aa11.1□□□□□ -0.63
CLN6-213ENST00000636212 PMCHL2Q9BQD1 86 aa11.1□□□□□ -0.63
CLN6-213ENST00000636212 ZNF706Q9Y5V0 76 aaPredicted RBP11.1□□□□□ -0.63
CLN6-213ENST00000636212 RNF213Q63HN8 5207 aa11.08□□□□□ -0.64
CLN6-213ENST00000636212 LGALS3P17931 250 aaKnown RBP11.08□□□□□ -0.64
CLN6-213ENST00000636212 LINC01545Q5VT33 79 aa11.08□□□□□ -0.64
CLN6-213ENST00000636212 ETDCA0A1B0GVM5 59 aa11.07□□□□□ -0.64
CLN6-213ENST00000636212 J3QQQ9 107 aa11.07□□□□□ -0.64
CLN6-213ENST00000636212 C3orf79P0CE67 100 aa11.07□□□□□ -0.64
CLN6-213ENST00000636212 NMUP48645 174 aa11.07□□□□□ -0.64
CLN6-213ENST00000636212 MIEN1Q9BRT3 115 aa11.07□□□□□ -0.64
CLN6-213ENST00000636212 CTAG1AP78358 180 aa11.06□□□□□ -0.64
CLN6-213ENST00000636212 LINC00337Q8N6G1 96 aa11.06□□□□□ -0.64
CLN6-213ENST00000636212 KCNQ1DNQ9H478 68 aa11.06□□□□□ -0.64
CLN6-213ENST00000636212 TSPEAR-AS2P59090 65 aa11.05□□□□□ -0.64
CLN6-213ENST00000636212 KRTDAPP60985 99 aa11.05□□□□□ -0.64
CLN6-213ENST00000636212 LPAP08519 4548 aa11.05□□□□□ -0.64
CLN6-213ENST00000636212 C20orf202A1L168 122 aa11.04□□□□□ -0.64
CLN6-213ENST00000636212 S100A6P06703 90 aa11.04□□□□□ -0.64
CLN6-213ENST00000636212 HIST3H2BBQ8N257 126 aa11.04□□□□□ -0.64
CLN6-213ENST00000636212 SPRR4Q96PI1 79 aa11.04□□□□□ -0.64
CLN6-213ENST00000636212 TRBV10-3A0A0K0K1G6 114 aa11.03□□□□□ -0.64
CLN6-213ENST00000636212 S100A2P29034 98 aa11.02□□□□□ -0.65
CLN6-213ENST00000636212 SPRR1AP35321 89 aa11.02□□□□□ -0.65
CLN6-213ENST00000636212 DAND5Q8N907 189 aa11.02□□□□□ -0.65
CLN6-213ENST00000636212 LOC107984156A0A0G2JMH3 177 aa11.01□□□□□ -0.65
CLN6-213ENST00000636212 TRBV10-2A0A0K0K1G8 114 aa11.01□□□□□ -0.65
CLN6-213ENST00000636212 E9PLD3 99 aa11.01□□□□□ -0.65
CLN6-213ENST00000636212 DDTP30046 118 aa11.01□□□□□ -0.65
CLN6-213ENST00000636212 C4orf48Q5BLP8 95 aa11.01□□□□□ -0.65
CLN6-213ENST00000636212 SPAG11AQ6PDA7 123 aa11.01□□□□□ -0.65
CLN6-213ENST00000636212 ARL17AQ8IVW1 177 aa11.01□□□□□ -0.65
CLN6-213ENST00000636212 C3orf22Q8N5N4 141 aa11.01□□□□□ -0.65
CLN6-213ENST00000636212 AKR1D1P51857 326 aa11□□□□□ -0.65
CLN6-213ENST00000636212 SMCR5Q8TEV8 140 aa11□□□□□ -0.65
CLN6-213ENST00000636212 HIST1H2BLQ99880 126 aa11□□□□□ -0.65
CLN6-213ENST00000636212 S100A7L2Q5SY68 101 aa10.99□□□□□ -0.65
CLN6-213ENST00000636212 RETNLBQ9BQ08 111 aa10.99□□□□□ -0.65
CLN6-213ENST00000636212 SPANXB1Q9NS25 103 aaPredicted RBP10.99□□□□□ -0.65
CLN6-213ENST00000636212 KRTAP4-16G5E9R7 235 aaPredicted RBP10.96□□□□□ -0.65
CLN6-213ENST00000636212 NDUFC2O95298 119 aa10.96□□□□□ -0.65
CLN6-213ENST00000636212 PPDPFQ9H3Y8 114 aa10.95□□□□□ -0.66
CLN6-213ENST00000636212 B5MCH6 92 aa10.94□□□□□ -0.66
CLN6-213ENST00000636212 CBY1Q9Y3M2 126 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 172.2 ms