RNA–Protein interactions for RNA: ENST00000593764.5

SHKBP1-202, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 870 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-202ENST00000593764 IGKV2D-28P01615 120 aa11.05□□□□□ -0.64
SHKBP1-202ENST00000593764 RPL28P46779 137 aaKnown RBP11.05□□□□□ -0.64
SHKBP1-202ENST00000593764 RPL24P83731 157 aaKnown RBP11.05□□□□□ -0.64
SHKBP1-202ENST00000593764 KRTAP13-1Q8IUC0 172 aa11.05□□□□□ -0.64
SHKBP1-202ENST00000593764 HIST1H2BKO60814 126 aa11.04□□□□□ -0.64
SHKBP1-202ENST00000593764 HIST1H2BJP06899 126 aa11.04□□□□□ -0.64
SHKBP1-202ENST00000593764 SMIM13P0DJ93 91 aa11.04□□□□□ -0.64
SHKBP1-202ENST00000593764 HIST1H2BOP23527 126 aa11.04□□□□□ -0.64
SHKBP1-202ENST00000593764 HIST1H2BBP33778 126 aa11.04□□□□□ -0.64
SHKBP1-202ENST00000593764 HIST1H2BDP58876 126 aa11.04□□□□□ -0.64
SHKBP1-202ENST00000593764 HIST1H2BCP62807 126 aa11.04□□□□□ -0.64
SHKBP1-202ENST00000593764 HIST2H2BEQ16778 126 aa11.04□□□□□ -0.64
SHKBP1-202ENST00000593764 HIST2H2BFQ5QNW6 126 aaPredicted RBP11.04□□□□□ -0.64
SHKBP1-202ENST00000593764 HIST1H2BHQ93079 126 aa11.04□□□□□ -0.64
SHKBP1-202ENST00000593764 HIST1H2BNQ99877 126 aa11.04□□□□□ -0.64
SHKBP1-202ENST00000593764 HIST1H2BMQ99879 126 aa11.04□□□□□ -0.64
SHKBP1-202ENST00000593764 PMCHL2Q9BQD1 86 aa11.04□□□□□ -0.64
SHKBP1-202ENST00000593764 NDUFA12Q9UI09 145 aa11.04□□□□□ -0.64
SHKBP1-202ENST00000593764 PLNP26678 52 aa11.03□□□□□ -0.64
SHKBP1-202ENST00000593764 TSPEAR-AS2P59090 65 aa11.03□□□□□ -0.64
SHKBP1-202ENST00000593764 HERV-K104P63124 156 aa11.03□□□□□ -0.64
SHKBP1-202ENST00000593764 LRP2P98164 4655 aa11.02□□□□□ -0.64
SHKBP1-202ENST00000593764 DPM2O94777 84 aa11.02□□□□□ -0.65
SHKBP1-202ENST00000593764 LEPROTO15243 131 aa11.01□□□□□ -0.65
SHKBP1-202ENST00000593764 MYMXA0A1B0GTQ4 84 aa11□□□□□ -0.65
SHKBP1-202ENST00000593764 TMEM238C9JI98 176 aa11□□□□□ -0.65
SHKBP1-202ENST00000593764 MEIG1Q5JSS6 88 aa11□□□□□ -0.65
SHKBP1-202ENST00000593764 MIR7-3HGQ8N6C7 128 aa11□□□□□ -0.65
SHKBP1-202ENST00000593764 IGKCP01834 107 aa10.99□□□□□ -0.65
SHKBP1-202ENST00000593764 UBE2AP49459 152 aa10.99□□□□□ -0.65
SHKBP1-202ENST00000593764 PLEKHB2Q96CS7 222 aa10.99□□□□□ -0.65
SHKBP1-202ENST00000593764 MAP1LC3CQ9BXW4 147 aa10.99□□□□□ -0.65
SHKBP1-202ENST00000593764 TMEM126AQ9H061 195 aa10.99□□□□□ -0.65
SHKBP1-202ENST00000593764 M0R378 163 aa10.98□□□□□ -0.65
SHKBP1-202ENST00000593764 RPL13AP40429 203 aaKnown RBP10.98□□□□□ -0.65
SHKBP1-202ENST00000593764 LINC00587B1AMM8 73 aa10.97□□□□□ -0.65
SHKBP1-202ENST00000593764 J3QQQ9 107 aa10.97□□□□□ -0.65
SHKBP1-202ENST00000593764 ATP6V1G1O75348 118 aa10.97□□□□□ -0.65
SHKBP1-202ENST00000593764 BOD1L2Q8IYS8 172 aa10.96□□□□□ -0.65
SHKBP1-202ENST00000593764 A0A087X002 238 aa10.95□□□□□ -0.66
SHKBP1-202ENST00000593764 HERVK_113P61574 105 aa10.95□□□□□ -0.66
SHKBP1-202ENST00000593764 PRLHP81277 87 aa10.95□□□□□ -0.66
SHKBP1-202ENST00000593764 SYS1-DBNDD2H3BUS1 97 aa10.94□□□□□ -0.66
SHKBP1-202ENST00000593764 FAM19A1Q7Z5A9 133 aa10.94□□□□□ -0.66
SHKBP1-202ENST00000593764 ANAPC11Q9NYG5 84 aa10.94□□□□□ -0.66
SHKBP1-202ENST00000593764 LOC107984156A0A0G2JMH3 177 aa10.93□□□□□ -0.66
SHKBP1-202ENST00000593764 ARL17AQ8IVW1 177 aa10.93□□□□□ -0.66
SHKBP1-202ENST00000593764 NMUP48645 174 aa10.92□□□□□ -0.66
SHKBP1-202ENST00000593764 DAND5Q8N907 189 aa10.92□□□□□ -0.66
SHKBP1-202ENST00000593764 LGALS3P17931 250 aaKnown RBP10.91□□□□□ -0.66
SHKBP1-202ENST00000593764 COA6Q5JTJ3 125 aaKnown RBP10.91□□□□□ -0.66
SHKBP1-202ENST00000593764 IGKV2D-26A0A0A0MRZ7 120 aa10.9□□□□□ -0.66
SHKBP1-202ENST00000593764 E9PLD3 99 aa10.9□□□□□ -0.66
SHKBP1-202ENST00000593764 NCR3O14931 201 aa10.9□□□□□ -0.66
SHKBP1-202ENST00000593764 CRYGAP11844 174 aa10.9□□□□□ -0.66
SHKBP1-202ENST00000593764 LINC01545Q5VT33 79 aa10.9□□□□□ -0.66
SHKBP1-202ENST00000593764 KRTAP13-2Q52LG2 175 aa10.88□□□□□ -0.67
SHKBP1-202ENST00000593764 PET117Q6UWS5 81 aa10.88□□□□□ -0.67
SHKBP1-202ENST00000593764 KCNQ1DNQ9H478 68 aa10.88□□□□□ -0.67
SHKBP1-202ENST00000593764 LPAP08519 4548 aa10.87□□□□□ -0.67
SHKBP1-202ENST00000593764 SPRR1AP35321 89 aa10.87□□□□□ -0.67
SHKBP1-202ENST00000593764 TRBV10-3A0A0K0K1G6 114 aa10.86□□□□□ -0.67
SHKBP1-202ENST00000593764 PRYO14603 147 aa10.86□□□□□ -0.67
SHKBP1-202ENST00000593764 C3orf79P0CE67 100 aa10.86□□□□□ -0.67
SHKBP1-202ENST00000593764 FAM229BQ4G0N7 80 aa10.86□□□□□ -0.67
SHKBP1-202ENST00000593764 TYMSOSQ8TAI1 123 aa10.86□□□□□ -0.67
SHKBP1-202ENST00000593764 A0A0J9YXY3 114 aa10.85□□□□□ -0.67
SHKBP1-202ENST00000593764 KRTAP4-16G5E9R7 235 aaPredicted RBP10.85□□□□□ -0.67
SHKBP1-202ENST00000593764 ADAMTSL4-AS1Q5T5F5 129 aa10.85□□□□□ -0.67
SHKBP1-202ENST00000593764 EIF4EBP3O60516 100 aaPredicted RBP10.84□□□□□ -0.67
SHKBP1-202ENST00000593764 LINC00337Q8N6G1 96 aa10.84□□□□□ -0.67
SHKBP1-202ENST00000593764 HIGD2AQ9BW72 106 aa10.84□□□□□ -0.67
SHKBP1-202ENST00000593764 TRBV10-2A0A0K0K1G8 114 aa10.83□□□□□ -0.68
SHKBP1-202ENST00000593764 SOSTDC1Q6X4U4 206 aa10.83□□□□□ -0.68
SHKBP1-202ENST00000593764 NDUFC2O95298 119 aa10.81□□□□□ -0.68
SHKBP1-202ENST00000593764 TSPAN13O95857 204 aa10.81□□□□□ -0.68
SHKBP1-202ENST00000593764 KRTDAPP60985 99 aa10.8□□□□□ -0.68
SHKBP1-202ENST00000593764 LITAFQ99732 161 aa10.8□□□□□ -0.68
SHKBP1-202ENST00000593764 MIEN1Q9BRT3 115 aa10.8□□□□□ -0.68
SHKBP1-202ENST00000593764 SPANXB1Q9NS25 103 aaPredicted RBP10.8□□□□□ -0.68
SHKBP1-202ENST00000593764 DDTP30046 118 aa10.79□□□□□ -0.68
SHKBP1-202ENST00000593764 NPC2P61916 151 aa10.79□□□□□ -0.68
SHKBP1-202ENST00000593764 SPRR4Q96PI1 79 aa10.79□□□□□ -0.68
SHKBP1-202ENST00000593764 ETDCA0A1B0GVM5 59 aa10.78□□□□□ -0.68
SHKBP1-202ENST00000593764 IGLV6-57P01721 117 aa10.78□□□□□ -0.68
SHKBP1-202ENST00000593764 TTTY13Q9BZ97 58 aa10.78□□□□□ -0.68
SHKBP1-202ENST00000593764 RNF213Q63HN8 5207 aa10.78□□□□□ -0.68
SHKBP1-202ENST00000593764 SMCR5Q8TEV8 140 aa10.77□□□□□ -0.69
SHKBP1-202ENST00000593764 B5MCH6 92 aa10.76□□□□□ -0.69
SHKBP1-202ENST00000593764 TIMM17BO60830 172 aa10.76□□□□□ -0.69
SHKBP1-202ENST00000593764 C4orf48Q5BLP8 95 aa10.76□□□□□ -0.69
SHKBP1-202ENST00000593764 C3orf22Q8N5N4 141 aa10.76□□□□□ -0.69
SHKBP1-202ENST00000593764 ZNF815PA8K554 130 aa10.75□□□□□ -0.69
SHKBP1-202ENST00000593764 PRR4Q16378 134 aa10.75□□□□□ -0.69
SHKBP1-202ENST00000593764 S100A12P80511 92 aa10.74□□□□□ -0.69
SHKBP1-202ENST00000593764 LINC00304Q8N9R0 145 aa10.74□□□□□ -0.69
SHKBP1-202ENST00000593764 LINC00308Q8TCZ7 52 aa10.74□□□□□ -0.69
SHKBP1-202ENST00000593764 S100A1P23297 94 aa10.73□□□□□ -0.69
SHKBP1-202ENST00000593764 S100A7L2Q5SY68 101 aa10.73□□□□□ -0.69
SHKBP1-202ENST00000593764 ERC2-IT1O76042 136 aa10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms