RNA–Protein interactions for RNA: ENST00000570023.1

VPS39-212, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 337 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-212ENST00000570023 CMC4P56277 68 aaPredicted RBP2.62□□□□□ -1.99
VPS39-212ENST00000570023 C20orf166-AS1Q96NR2 134 aa2.62□□□□□ -1.99
VPS39-212ENST00000570023 NDUFAF8A1L188 74 aa2.61□□□□□ -1.99
VPS39-212ENST00000570023 H3BUA1 57 aa2.61□□□□□ -1.99
VPS39-212ENST00000570023 HRES1P13985 223 aa2.61□□□□□ -1.99
VPS39-212ENST00000570023 CSNK1G2-AS1Q8NCQ2 148 aa2.61□□□□□ -1.99
VPS39-212ENST00000570023 USMG5Q96IX5 58 aa2.61□□□□□ -1.99
VPS39-212ENST00000570023 C8orf17Q9NRJ1 99 aa2.61□□□□□ -1.99
VPS39-212ENST00000570023 MINOS1-NBL1R4GNA1 71 aa2.61□□□□□ -1.99
VPS39-212ENST00000570023 SDK2Q58EX2 2172 aa2.61□□□□□ -1.99
VPS39-212ENST00000570023 A0A0J9YWU9 116 aa2.6□□□□□ -1.99
VPS39-212ENST00000570023 A0A1B0GU69 56 aa2.6□□□□□ -1.99
VPS39-212ENST00000570023 NUPR2A6NF83 97 aa2.6□□□□□ -1.99
VPS39-212ENST00000570023 A8MTW9 85 aa2.6□□□□□ -1.99
VPS39-212ENST00000570023 A8MWP4 228 aa2.6□□□□□ -1.99
VPS39-212ENST00000570023 EGFEM1PQ0D2K5 195 aa2.6□□□□□ -1.99
VPS39-212ENST00000570023 LUZP6Q538Z0 58 aa2.6□□□□□ -1.99
VPS39-212ENST00000570023 CASC10Q5T4H9 136 aa2.6□□□□□ -1.99
VPS39-212ENST00000570023 KRTAP26-1Q6PEX3 210 aa2.6□□□□□ -1.99
VPS39-212ENST00000570023 DIDO1Q9BTC0 2240 aaKnown RBP2.6□□□□□ -1.99
VPS39-212ENST00000570023 TNCP24821 2201 aa2.59□□□□□ -1.99
VPS39-212ENST00000570023 IGKV3-7A0A075B6H7 116 aa2.59□□□□□ -1.99
VPS39-212ENST00000570023 GVQW2A0A096LPI5 108 aaPredicted RBP2.59□□□□□ -1.99
VPS39-212ENST00000570023 KRTAP4-16G5E9R7 235 aaPredicted RBP2.59□□□□□ -1.99
VPS39-212ENST00000570023 DEFB133Q30KQ1 61 aa2.59□□□□□ -1.99
VPS39-212ENST00000570023 LYPD2Q6UXB3 125 aa2.59□□□□□ -1.99
VPS39-212ENST00000570023 RHPN1-AS1Q9BWJ2 59 aa2.59□□□□□ -1.99
VPS39-212ENST00000570023 DNAH10OSP0CZ25 163 aa2.58□□□□□ -2
VPS39-212ENST00000570023 ACYP2P14621 99 aa2.58□□□□□ -2
VPS39-212ENST00000570023 DEFB113Q30KQ7 82 aa2.58□□□□□ -2
VPS39-212ENST00000570023 MALRD1Q5VYJ5 2156 aa2.58□□□□□ -2
VPS39-212ENST00000570023 PLXNB1O43157 2135 aa2.57□□□□□ -2
VPS39-212ENST00000570023 MUC4Q99102 2169 aa2.57□□□□□ -2
VPS39-212ENST00000570023 TRGV1A0A0A0MS02 117 aa2.57□□□□□ -2
VPS39-212ENST00000570023 A0A1B0GVY2 172 aa2.57□□□□□ -2
VPS39-212ENST00000570023 A8MUU9 505 aa2.57□□□□□ -2
VPS39-212ENST00000570023 C7orf33Q8WU49 177 aa2.57□□□□□ -2
VPS39-212ENST00000570023 DHRS4-AS1Q9P1J3 65 aa2.57□□□□□ -2
VPS39-212ENST00000570023 RTTNQ86VV8 2226 aa2.57□□□□□ -2
VPS39-212ENST00000570023 INSP01308 110 aa2.56□□□□□ -2
VPS39-212ENST00000570023 DEFB1P60022 68 aa2.56□□□□□ -2
VPS39-212ENST00000570023 SPINK13Q1W4C9 94 aa2.56□□□□□ -2
VPS39-212ENST00000570023 Q5W150 140 aa2.56□□□□□ -2
VPS39-212ENST00000570023 WFDC13Q8IUB5 93 aa2.56□□□□□ -2
VPS39-212ENST00000570023 Q8N377 158 aa2.56□□□□□ -2
VPS39-212ENST00000570023 F5P12259 2224 aa2.56□□□□□ -2
VPS39-212ENST00000570023 A6NDX4 124 aa2.55□□□□□ -2
VPS39-212ENST00000570023 LYNX1G3V0Z9 82 aa2.55□□□□□ -2
VPS39-212ENST00000570023 ANGP03950 147 aaKnown RBP2.55□□□□□ -2
VPS39-212ENST00000570023 WFDC10BQ8IUB3 73 aa2.55□□□□□ -2
VPS39-212ENST00000570023 PRO3102Q9H379 93 aa2.55□□□□□ -2
VPS39-212ENST00000570023 LINC00472Q9H8W2 130 aa2.55□□□□□ -2
VPS39-212ENST00000570023 DNAJC13O75165 2243 aa2.54□□□□□ -2
VPS39-212ENST00000570023 IGKV2-24A0A0C4DH68 120 aa2.54□□□□□ -2
VPS39-212ENST00000570023 IGKV3OR2-268A0A0C4DH90 116 aa2.54□□□□□ -2
VPS39-212ENST00000570023 IGLV7-43P04211 117 aa2.54□□□□□ -2
VPS39-212ENST00000570023 TLX1NBP0CAT3 122 aa2.54□□□□□ -2
VPS39-212ENST00000570023 LCE3CQ5T5A8 94 aa2.54□□□□□ -2
VPS39-212ENST00000570023 CAMK2N1Q7Z7J9 78 aa2.54□□□□□ -2
VPS39-212ENST00000570023 CADP27708 2225 aa2.54□□□□□ -2
VPS39-212ENST00000570023 PRR14LQ5THK1 2151 aa2.54□□□□□ -2
VPS39-212ENST00000570023 RPL37AP8A6NKH3 93 aa2.53□□□□□ -2
VPS39-212ENST00000570023 KRTAP9-6A8MVA2 160 aa2.53□□□□□ -2
VPS39-212ENST00000570023 DEFB131AP59861 70 aa2.53□□□□□ -2
VPS39-212ENST00000570023 TMEM105Q8N8V8 129 aa2.53□□□□□ -2
VPS39-212ENST00000570023 DOCK10Q96BY6 2186 aa2.53□□□□□ -2
VPS39-212ENST00000570023 NAV3Q8IVL0 2385 aa2.52□□□□□ -2.01
VPS39-212ENST00000570023 RP1P56715 2156 aa2.52□□□□□ -2.01
VPS39-212ENST00000570023 IGLV8-61A0A075B6I0 122 aa2.52□□□□□ -2.01
VPS39-212ENST00000570023 G3V318 75 aa2.52□□□□□ -2.01
VPS39-212ENST00000570023 PCOTHQ58A44 107 aa2.52□□□□□ -2.01
VPS39-212ENST00000570023 KRTAP10-3P60369 221 aa2.51□□□□□ -2.01
VPS39-212ENST00000570023 DEFB103AP81534 67 aa2.51□□□□□ -2.01
VPS39-212ENST00000570023 DEFB116Q30KQ4 102 aa2.51□□□□□ -2.01
VPS39-212ENST00000570023 C5orf56Q8N8D9 126 aa2.51□□□□□ -2.01
VPS39-212ENST00000570023 C6orf48Q9UBA6 75 aa2.51□□□□□ -2.01
VPS39-212ENST00000570023 PDE4DIPQ5VU43 2346 aa2.51□□□□□ -2.01
VPS39-212ENST00000570023 ZNF318Q5VUA4 2279 aa2.51□□□□□ -2.01
VPS39-212ENST00000570023 ZFHX3Q15911 3703 aa2.5□□□□□ -2.01
VPS39-212ENST00000570023 A0A087WTM6 91 aa2.5□□□□□ -2.01
VPS39-212ENST00000570023 HTN1P15515 57 aa2.5□□□□□ -2.01
VPS39-212ENST00000570023 SPINT4Q6UDR6 99 aa2.5□□□□□ -2.01
VPS39-212ENST00000570023 LINC00304Q8N9R0 145 aa2.5□□□□□ -2.01
VPS39-212ENST00000570023 CCL19Q99731 98 aa2.5□□□□□ -2.01
VPS39-212ENST00000570023 CR1P17927 2039 aa2.5□□□□□ -2.01
VPS39-212ENST00000570023 SVILO95425 2214 aa2.5□□□□□ -2.01
VPS39-212ENST00000570023 A0A1W2PPR1 153 aa2.49□□□□□ -2.01
VPS39-212ENST00000570023 DEFB105AQ8NG35 78 aa2.49□□□□□ -2.01
VPS39-212ENST00000570023 ANAPC11Q9NYG5 84 aa2.49□□□□□ -2.01
VPS39-212ENST00000570023 SEC16AO15027 2179 aa2.49□□□□□ -2.01
VPS39-212ENST00000570023 MMP24-AS1A0A0U1RRL7 71 aa2.48□□□□□ -2.01
VPS39-212ENST00000570023 A0A1B0GVX0 72 aa2.48□□□□□ -2.01
VPS39-212ENST00000570023 DEFB109BQ30KR1 87 aa2.48□□□□□ -2.01
VPS39-212ENST00000570023 UNQ6190/PRO20217Q6UXQ8 127 aa2.48□□□□□ -2.01
VPS39-212ENST00000570023 Q6ZRX8 168 aa2.48□□□□□ -2.01
VPS39-212ENST00000570023 KRTAP11-1Q8IUC1 163 aa2.48□□□□□ -2.01
VPS39-212ENST00000570023 CIRBP-AS1Q8TBR5 109 aa2.48□□□□□ -2.01
VPS39-212ENST00000570023 FAM168BA1KXE4 195 aa2.47□□□□□ -2.01
VPS39-212ENST00000570023 PANO1I0J062 215 aa2.47□□□□□ -2.01
VPS39-212ENST00000570023 SPRR1AP35321 89 aa2.47□□□□□ -2.01
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms