RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 CDKN2A-AS1Q9UH64 79 aa6.37□□□□□ -1.39
CCDC88C-206ENST00000553437 TRBV30A0A0K0K1B3 111 aa6.36□□□□□ -1.39
CCDC88C-206ENST00000553437 LINC01549A6NIU2 74 aa6.36□□□□□ -1.39
CCDC88C-206ENST00000553437 HERVK_113P63121 156 aa6.36□□□□□ -1.39
CCDC88C-206ENST00000553437 SEC11AP67812 179 aa6.36□□□□□ -1.39
CCDC88C-206ENST00000553437 SRSF9Q13242 221 aaKnown RBP eCLIP6.36□□□□□ -1.39
CCDC88C-206ENST00000553437 COL5A1-AS1Q5SY13 56 aa6.36□□□□□ -1.39
CCDC88C-206ENST00000553437 KRTAP7-1Q8IUC3 87 aa6.36□□□□□ -1.39
CCDC88C-206ENST00000553437 CST9LQ9H4G1 147 aa6.36□□□□□ -1.39
CCDC88C-206ENST00000553437 A0A096LNJ9 63 aa6.35□□□□□ -1.39
CCDC88C-206ENST00000553437 FAM168BA1KXE4 195 aa6.35□□□□□ -1.39
CCDC88C-206ENST00000553437 HBDP02042 147 aa6.35□□□□□ -1.39
CCDC88C-206ENST00000553437 PHF5AQ7RTV0 110 aaKnown RBP6.35□□□□□ -1.39
CCDC88C-206ENST00000553437 Q8IZM0 81 aa6.35□□□□□ -1.39
CCDC88C-206ENST00000553437 PMCHL2Q9BQD1 86 aa6.35□□□□□ -1.39
CCDC88C-206ENST00000553437 TNXBP22105 4242 aa6.35□□□□□ -1.39
CCDC88C-206ENST00000553437 IGLV5-45A0A087WSX0 123 aa6.34□□□□□ -1.39
CCDC88C-206ENST00000553437 TINCRA0A1B0GVN0 87 aa6.34□□□□□ -1.39
CCDC88C-206ENST00000553437 BATFQ16520 125 aa6.34□□□□□ -1.39
CCDC88C-206ENST00000553437 GAGE2EQ4V326 116 aa6.34□□□□□ -1.39
CCDC88C-206ENST00000553437 GEMIN7Q9H840 131 aaKnown RBP6.34□□□□□ -1.39
CCDC88C-206ENST00000553437 TOMM7Q9P0U1 55 aa6.34□□□□□ -1.39
CCDC88C-206ENST00000553437 GAGE2DQ9UEU5 116 aa6.34□□□□□ -1.39
CCDC88C-206ENST00000553437 RNF213Q63HN8 5207 aa6.34□□□□□ -1.39
CCDC88C-206ENST00000553437 SMIM1B2RUZ4 78 aa6.33□□□□□ -1.4
CCDC88C-206ENST00000553437 NDUFC2-KCTD14E9PQ53 114 aa6.33□□□□□ -1.4
CCDC88C-206ENST00000553437 PRSS2P07478 247 aa6.33□□□□□ -1.4
CCDC88C-206ENST00000553437 PMVKQ15126 192 aa6.33□□□□□ -1.4
CCDC88C-206ENST00000553437 C6orf226Q5I0X4 101 aa6.33□□□□□ -1.4
CCDC88C-206ENST00000553437 C9orf129Q5T035 196 aaKnown RBP6.33□□□□□ -1.4
CCDC88C-206ENST00000553437 SLC25A34Q6PIV7 304 aa6.33□□□□□ -1.4
CCDC88C-206ENST00000553437 SPINK6Q6UWN8 80 aa6.33□□□□□ -1.4
CCDC88C-206ENST00000553437 PSORS1C2Q9UIG4 136 aa6.33□□□□□ -1.4
CCDC88C-206ENST00000553437 CKS1BP61024 79 aa6.32□□□□□ -1.4
CCDC88C-206ENST00000553437 KRTAP11-1Q8IUC1 163 aa6.32□□□□□ -1.4
CCDC88C-206ENST00000553437 IFI27L1Q96BM0 104 aa6.32□□□□□ -1.4
CCDC88C-206ENST00000553437 H0Y8G0 127 aa6.31□□□□□ -1.4
CCDC88C-206ENST00000553437 LINC01600Q96MT4 127 aa6.31□□□□□ -1.4
CCDC88C-206ENST00000553437 F8VRH5 84 aa6.3□□□□□ -1.4
CCDC88C-206ENST00000553437 DLEU1O43261 78 aa6.3□□□□□ -1.4
CCDC88C-206ENST00000553437 COX8AP10176 69 aa6.3□□□□□ -1.4
CCDC88C-206ENST00000553437 SERTAD4-AS1Q5TG53 156 aa6.3□□□□□ -1.4
CCDC88C-206ENST00000553437 FAM19A5Q7Z5A7 132 aaPredicted RBP6.3□□□□□ -1.4
CCDC88C-206ENST00000553437 SVIPQ8NHG7 77 aa6.3□□□□□ -1.4
CCDC88C-206ENST00000553437 ATP5LO75964 103 aa6.29□□□□□ -1.4
CCDC88C-206ENST00000553437 SPINK8P0C7L1 97 aa6.29□□□□□ -1.4
CCDC88C-206ENST00000553437 CXCL5P42830 114 aa6.29□□□□□ -1.4
CCDC88C-206ENST00000553437 HINT1P49773 126 aaPredicted RBP6.29□□□□□ -1.4
CCDC88C-206ENST00000553437 C1orf137Q5JT78 98 aa6.29□□□□□ -1.4
CCDC88C-206ENST00000553437 COX7B2Q8TF08 81 aa6.29□□□□□ -1.4
CCDC88C-206ENST00000553437 M0QXV9 152 aa6.28□□□□□ -1.4
CCDC88C-206ENST00000553437 XAGE1AQ9HD64 81 aa6.28□□□□□ -1.4
CCDC88C-206ENST00000553437 IGLV5-39A0A0G2JS06 123 aa6.27□□□□□ -1.41
CCDC88C-206ENST00000553437 ZNF22P17026 224 aaPredicted RBP6.27□□□□□ -1.41
CCDC88C-206ENST00000553437 KRTAP10-8P60410 259 aa6.27□□□□□ -1.41
CCDC88C-206ENST00000553437 REG3GQ6UW15 175 aa6.27□□□□□ -1.41
CCDC88C-206ENST00000553437 LRP2P98164 4655 aa6.27□□□□□ -1.41
CCDC88C-206ENST00000553437 H3BRM9 83 aa6.26□□□□□ -1.41
CCDC88C-206ENST00000553437 IGLV7-43P04211 117 aa6.26□□□□□ -1.41
CCDC88C-206ENST00000553437 ODF1Q14990 250 aa6.26□□□□□ -1.41
CCDC88C-206ENST00000553437 ANKRD39Q53RE8 183 aa6.26□□□□□ -1.41
CCDC88C-206ENST00000553437 BVES-AS1Q5T3Y7 98 aa6.26□□□□□ -1.41
CCDC88C-206ENST00000553437 C22orf24Q9Y442 160 aa6.26□□□□□ -1.41
CCDC88C-206ENST00000553437 C11orf86A6NJI1 115 aa6.25□□□□□ -1.41
CCDC88C-206ENST00000553437 A6NJY4 79 aa6.24□□□□□ -1.41
CCDC88C-206ENST00000553437 DPM2O94777 84 aa6.24□□□□□ -1.41
CCDC88C-206ENST00000553437 IGKCP01834 107 aa6.24□□□□□ -1.41
CCDC88C-206ENST00000553437 UBE2BP63146 152 aa6.24□□□□□ -1.41
CCDC88C-206ENST00000553437 C2orf91Q6ZV80 131 aa6.24□□□□□ -1.41
CCDC88C-206ENST00000553437 BOD1L2Q8IYS8 172 aa6.24□□□□□ -1.41
CCDC88C-206ENST00000553437 HSD52Q0P140 79 aa6.23□□□□□ -1.41
CCDC88C-206ENST00000553437 TP73-AS1Q9UF72 201 aa6.23□□□□□ -1.41
CCDC88C-206ENST00000553437 PLA2G2DQ9UNK4 145 aa6.23□□□□□ -1.41
CCDC88C-206ENST00000553437 TRAV12-1A0A0B4J245 112 aa6.22□□□□□ -1.41
CCDC88C-206ENST00000553437 PLNP26678 52 aa6.22□□□□□ -1.41
CCDC88C-206ENST00000553437 DIRC1Q969H9 104 aa6.22□□□□□ -1.41
CCDC88C-206ENST00000553437 CHTOPQ9Y3Y2 248 aaKnown RBP6.22□□□□□ -1.41
CCDC88C-206ENST00000553437 A6NDN8 102 aa6.21□□□□□ -1.42
CCDC88C-206ENST00000553437 H0Y9J4 135 aa6.21□□□□□ -1.42
CCDC88C-206ENST00000553437 TAX1BP3O14907 124 aa6.21□□□□□ -1.42
CCDC88C-206ENST00000553437 NMUP48645 174 aa6.21□□□□□ -1.42
CCDC88C-206ENST00000553437 TMEM170BQ5T4T1 132 aa6.21□□□□□ -1.42
CCDC88C-206ENST00000553437 MRPL55Q7Z7F7 128 aaKnown RBP6.21□□□□□ -1.42
CCDC88C-206ENST00000553437 HIGD1BQ9P298 99 aa6.21□□□□□ -1.42
CCDC88C-206ENST00000553437 IGLV5-37A0A075B6J1 123 aa6.2□□□□□ -1.42
CCDC88C-206ENST00000553437 UBE2V1Q13404 147 aa6.2□□□□□ -1.42
CCDC88C-206ENST00000553437 ZNF625Q96I27 306 aaPredicted RBP6.2□□□□□ -1.42
CCDC88C-206ENST00000553437 LINC00167Q96N53 147 aa6.2□□□□□ -1.42
CCDC88C-206ENST00000553437 TMEM223A0PJW6 202 aa6.19□□□□□ -1.42
CCDC88C-206ENST00000553437 KRTAP1-4P0C5Y4 121 aa6.19□□□□□ -1.42
CCDC88C-206ENST00000553437 PFN2P35080 140 aa6.19□□□□□ -1.42
CCDC88C-206ENST00000553437 ERG28Q9UKR5 140 aa6.19□□□□□ -1.42
CCDC88C-206ENST00000553437 TMEM238LA0A1B0GVL6 79 aa6.18□□□□□ -1.42
CCDC88C-206ENST00000553437 ZNF861PO60384 105 aa6.18□□□□□ -1.42
CCDC88C-206ENST00000553437 COX17Q14061 63 aa6.18□□□□□ -1.42
CCDC88C-206ENST00000553437 VAMP3Q15836 100 aa6.18□□□□□ -1.42
CCDC88C-206ENST00000553437 PCP2Q8IVA1 136 aa6.18□□□□□ -1.42
CCDC88C-206ENST00000553437 PRR26Q8N8Z3 221 aa6.18□□□□□ -1.42
CCDC88C-206ENST00000553437 SND1-IT1Q9HBX3 110 aa6.18□□□□□ -1.42
CCDC88C-206ENST00000553437 GAGE10A6NGK3 116 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms