RNA–Protein interactions for RNA: ENST00000553145.1

HDAC4-217, Transcript of histone deacetylase 4, humanhuman

TSL 4

Gene HDAC4, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-217ENST00000553145 HIST1H2BHQ93079 126 aa11.32□□□□□ -0.6
HDAC4-217ENST00000553145 HIST1H2BNQ99877 126 aa11.32□□□□□ -0.6
HDAC4-217ENST00000553145 HIST1H2BMQ99879 126 aa11.32□□□□□ -0.6
HDAC4-217ENST00000553145 PMCHL2Q9BQD1 86 aa11.32□□□□□ -0.6
HDAC4-217ENST00000553145 A0A0U1RRA0 63 aa11.31□□□□□ -0.6
HDAC4-217ENST00000553145 ZNF861PO60384 105 aa11.31□□□□□ -0.6
HDAC4-217ENST00000553145 BCE1O60756 84 aa11.3□□□□□ -0.6
HDAC4-217ENST00000553145 LINC00158P58513 81 aa11.3□□□□□ -0.6
HDAC4-217ENST00000553145 TSPEAR-AS2P59090 65 aa11.3□□□□□ -0.6
HDAC4-217ENST00000553145 PRR26Q8N8Z3 221 aa11.3□□□□□ -0.6
HDAC4-217ENST00000553145 PLNP26678 52 aa11.29□□□□□ -0.6
HDAC4-217ENST00000553145 IGKV2-28A0A075B6P5 120 aa11.28□□□□□ -0.6
HDAC4-217ENST00000553145 IGKV2D-28P01615 120 aa11.28□□□□□ -0.6
HDAC4-217ENST00000553145 SMIM13P0DJ93 91 aa11.28□□□□□ -0.6
HDAC4-217ENST00000553145 NDUFA12Q9UI09 145 aa11.28□□□□□ -0.6
HDAC4-217ENST00000553145 DPM2O94777 84 aa11.27□□□□□ -0.61
HDAC4-217ENST00000553145 RPL24P83731 157 aaKnown RBP11.27□□□□□ -0.61
HDAC4-217ENST00000553145 IGLV1-50A0A075B6I6 118 aa11.26□□□□□ -0.61
HDAC4-217ENST00000553145 LEPROTO15243 131 aa11.26□□□□□ -0.61
HDAC4-217ENST00000553145 IGKCP01834 107 aa11.26□□□□□ -0.61
HDAC4-217ENST00000553145 HERV-K104P63124 156 aa11.26□□□□□ -0.61
HDAC4-217ENST00000553145 MEIG1Q5JSS6 88 aa11.26□□□□□ -0.61
HDAC4-217ENST00000553145 RPL28P46779 137 aaKnown RBP11.25□□□□□ -0.61
HDAC4-217ENST00000553145 MAP1LC3CQ9BXW4 147 aa11.25□□□□□ -0.61
HDAC4-217ENST00000553145 KRTAP13-1Q8IUC0 172 aa11.24□□□□□ -0.61
HDAC4-217ENST00000553145 MIR7-3HGQ8N6C7 128 aa11.24□□□□□ -0.61
HDAC4-217ENST00000553145 PLEKHB2Q96CS7 222 aa11.24□□□□□ -0.61
HDAC4-217ENST00000553145 MYMXA0A1B0GTQ4 84 aa11.23□□□□□ -0.61
HDAC4-217ENST00000553145 TMEM238C9JI98 176 aa11.22□□□□□ -0.61
HDAC4-217ENST00000553145 SYS1-DBNDD2H3BUS1 97 aa11.21□□□□□ -0.61
HDAC4-217ENST00000553145 J3QQQ9 107 aa11.21□□□□□ -0.61
HDAC4-217ENST00000553145 HERVK_113P61574 105 aa11.21□□□□□ -0.61
HDAC4-217ENST00000553145 TMEM126AQ9H061 195 aa11.21□□□□□ -0.61
HDAC4-217ENST00000553145 M0R378 163 aa11.2□□□□□ -0.62
HDAC4-217ENST00000553145 ATP6V1G1O75348 118 aa11.2□□□□□ -0.62
HDAC4-217ENST00000553145 UBE2AP49459 152 aa11.2□□□□□ -0.62
HDAC4-217ENST00000553145 BOD1L2Q8IYS8 172 aa11.19□□□□□ -0.62
HDAC4-217ENST00000553145 LINC00587B1AMM8 73 aa11.18□□□□□ -0.62
HDAC4-217ENST00000553145 PRLHP81277 87 aa11.18□□□□□ -0.62
HDAC4-217ENST00000553145 DAND5Q8N907 189 aa11.18□□□□□ -0.62
HDAC4-217ENST00000553145 LGALS3P17931 250 aaKnown RBP11.17□□□□□ -0.62
HDAC4-217ENST00000553145 COA6Q5JTJ3 125 aaKnown RBP11.17□□□□□ -0.62
HDAC4-217ENST00000553145 FAM19A1Q7Z5A9 133 aa11.17□□□□□ -0.62
HDAC4-217ENST00000553145 NCR3O14931 201 aa11.16□□□□□ -0.62
HDAC4-217ENST00000553145 NMUP48645 174 aa11.16□□□□□ -0.62
HDAC4-217ENST00000553145 LINC01545Q5VT33 79 aa11.16□□□□□ -0.62
HDAC4-217ENST00000553145 E9PLD3 99 aa11.15□□□□□ -0.62
HDAC4-217ENST00000553145 UBR4Q5T4S7 5183 aa11.14□□□□□ -0.63
HDAC4-217ENST00000553145 A0A087X002 238 aa11.14□□□□□ -0.63
HDAC4-217ENST00000553145 RPL13AP40429 203 aaKnown RBP11.14□□□□□ -0.63
HDAC4-217ENST00000553145 PET117Q6UWS5 81 aa11.14□□□□□ -0.63
HDAC4-217ENST00000553145 C3orf79P0CE67 100 aa11.13□□□□□ -0.63
HDAC4-217ENST00000553145 ANAPC11Q9NYG5 84 aa11.13□□□□□ -0.63
HDAC4-217ENST00000553145 LOC107984156A0A0G2JMH3 177 aa11.12□□□□□ -0.63
HDAC4-217ENST00000553145 ARL17AQ8IVW1 177 aa11.12□□□□□ -0.63
HDAC4-217ENST00000553145 IGKV2D-26A0A0A0MRZ7 120 aa11.1□□□□□ -0.63
HDAC4-217ENST00000553145 A0A0J9YXY3 114 aa11.1□□□□□ -0.63
HDAC4-217ENST00000553145 PRYO14603 147 aa11.09□□□□□ -0.63
HDAC4-217ENST00000553145 KRTDAPP60985 99 aa11.09□□□□□ -0.63
HDAC4-217ENST00000553145 ADAMTSL4-AS1Q5T5F5 129 aa11.09□□□□□ -0.63
HDAC4-217ENST00000553145 TRBV10-3A0A0K0K1G6 114 aa11.08□□□□□ -0.64
HDAC4-217ENST00000553145 EIF4EBP3O60516 100 aaPredicted RBP11.08□□□□□ -0.64
HDAC4-217ENST00000553145 CRYGAP11844 174 aa11.08□□□□□ -0.64
HDAC4-217ENST00000553145 SOSTDC1Q6X4U4 206 aa11.08□□□□□ -0.64
HDAC4-217ENST00000553145 SPRR1AP35321 89 aa11.07□□□□□ -0.64
HDAC4-217ENST00000553145 KRTAP13-2Q52LG2 175 aa11.07□□□□□ -0.64
HDAC4-217ENST00000553145 KCNQ1DNQ9H478 68 aa11.07□□□□□ -0.64
HDAC4-217ENST00000553145 LRP2P98164 4655 aa11.06□□□□□ -0.64
HDAC4-217ENST00000553145 NPC2P61916 151 aa11.06□□□□□ -0.64
HDAC4-217ENST00000553145 HIGD2AQ9BW72 106 aa11.06□□□□□ -0.64
HDAC4-217ENST00000553145 TTTY13Q9BZ97 58 aa11.06□□□□□ -0.64
HDAC4-217ENST00000553145 KRTAP4-16G5E9R7 235 aaPredicted RBP11.05□□□□□ -0.64
HDAC4-217ENST00000553145 S100A1P23297 94 aa11.05□□□□□ -0.64
HDAC4-217ENST00000553145 LITAFQ99732 161 aa11.05□□□□□ -0.64
HDAC4-217ENST00000553145 MIEN1Q9BRT3 115 aa11.05□□□□□ -0.64
HDAC4-217ENST00000553145 TRBV10-2A0A0K0K1G8 114 aa11.04□□□□□ -0.64
HDAC4-217ENST00000553145 FAM229BQ4G0N7 80 aa11.04□□□□□ -0.64
HDAC4-217ENST00000553145 LINC00337Q8N6G1 96 aa11.04□□□□□ -0.64
HDAC4-217ENST00000553145 TYMSOSQ8TAI1 123 aa11.04□□□□□ -0.64
HDAC4-217ENST00000553145 NDUFC2O95298 119 aa11.03□□□□□ -0.64
HDAC4-217ENST00000553145 SPANXB1Q9NS25 103 aaPredicted RBP11.03□□□□□ -0.64
HDAC4-217ENST00000553145 DDTP30046 118 aa11.02□□□□□ -0.65
HDAC4-217ENST00000553145 ZNF815PA8K554 130 aa11.01□□□□□ -0.65
HDAC4-217ENST00000553145 ETDCA0A1B0GVM5 59 aa11□□□□□ -0.65
HDAC4-217ENST00000553145 ATOH7Q8N100 152 aa11□□□□□ -0.65
HDAC4-217ENST00000553145 C20orf202A1L168 122 aa10.99□□□□□ -0.65
HDAC4-217ENST00000553145 TIMM17BO60830 172 aa10.99□□□□□ -0.65
HDAC4-217ENST00000553145 TSPAN13O95857 204 aa10.99□□□□□ -0.65
HDAC4-217ENST00000553145 IGLV6-57P01721 117 aa10.99□□□□□ -0.65
HDAC4-217ENST00000553145 ANKRD39Q53RE8 183 aa10.99□□□□□ -0.65
HDAC4-217ENST00000553145 SPRR4Q96PI1 79 aa10.99□□□□□ -0.65
HDAC4-217ENST00000553145 LINC00308Q8TCZ7 52 aa10.98□□□□□ -0.65
HDAC4-217ENST00000553145 SMCR5Q8TEV8 140 aa10.98□□□□□ -0.65
HDAC4-217ENST00000553145 B5MCH6 92 aa10.97□□□□□ -0.65
HDAC4-217ENST00000553145 HIST3H2BBQ8N257 126 aa10.97□□□□□ -0.65
HDAC4-217ENST00000553145 S100A12P80511 92 aa10.96□□□□□ -0.65
HDAC4-217ENST00000553145 S100A7L2Q5SY68 101 aa10.96□□□□□ -0.65
HDAC4-217ENST00000553145 C3orf22Q8N5N4 141 aa10.96□□□□□ -0.65
HDAC4-217ENST00000553145 LPAP08519 4548 aa10.94□□□□□ -0.66
HDAC4-217ENST00000553145 HIST1H2BLQ99880 126 aa10.94□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 128.3 ms