RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 IGHV3OR16-12A0A075B7B8 117 aa5.33□□□□□ -1.56
LIMA1-216ENST00000552909 IGHV3-38A0A0C4DH36 116 aa5.33□□□□□ -1.56
LIMA1-216ENST00000552909 INSP01308 110 aa5.33□□□□□ -1.56
LIMA1-216ENST00000552909 CCKP06307 115 aa5.33□□□□□ -1.56
LIMA1-216ENST00000552909 SMIM11BQ8TCY0 68 aa5.33□□□□□ -1.56
LIMA1-216ENST00000552909 A0A0J9YWU9 116 aa5.33□□□□□ -1.56
LIMA1-216ENST00000552909 LECT2O14960 151 aa5.33□□□□□ -1.56
LIMA1-216ENST00000552909 CASC10Q5T4H9 136 aa5.33□□□□□ -1.56
LIMA1-216ENST00000552909 CSNK1G2-AS1Q8NCQ2 148 aa5.33□□□□□ -1.56
LIMA1-216ENST00000552909 SND1-IT1Q9HBX3 110 aa5.33□□□□□ -1.56
LIMA1-216ENST00000552909 Q9UF83 564 aa5.33□□□□□ -1.56
LIMA1-216ENST00000552909 HYDINQ4G0P3 5121 aa5.33□□□□□ -1.56
LIMA1-216ENST00000552909 DEFB4AO15263 64 aa5.32□□□□□ -1.56
LIMA1-216ENST00000552909 Q6ZSN1 163 aa5.32□□□□□ -1.56
LIMA1-216ENST00000552909 FAM19A3Q7Z5A8 133 aa5.32□□□□□ -1.56
LIMA1-216ENST00000552909 IGKV2-28A0A075B6P5 120 aa5.32□□□□□ -1.56
LIMA1-216ENST00000552909 IGKV2D-28P01615 120 aa5.32□□□□□ -1.56
LIMA1-216ENST00000552909 C1orf158Q8N1D5 194 aa5.32□□□□□ -1.56
LIMA1-216ENST00000552909 ORMDL1Q9P0S3 153 aa5.32□□□□□ -1.56
LIMA1-216ENST00000552909 SMIM26A0A096LP01 95 aa5.31□□□□□ -1.56
LIMA1-216ENST00000552909 TRBV10-3A0A0K0K1G6 114 aa5.31□□□□□ -1.56
LIMA1-216ENST00000552909 C3orf84H3BNL1 204 aa5.31□□□□□ -1.56
LIMA1-216ENST00000552909 H7BZZ5 65 aa5.31□□□□□ -1.56
LIMA1-216ENST00000552909 ENHOQ6UWT2 76 aa5.31□□□□□ -1.56
LIMA1-216ENST00000552909 FAM19A1Q7Z5A9 133 aa5.31□□□□□ -1.56
LIMA1-216ENST00000552909 MIR7-3HGQ8N6C7 128 aa5.31□□□□□ -1.56
LIMA1-216ENST00000552909 PKIGQ9Y2B9 76 aa5.31□□□□□ -1.56
LIMA1-216ENST00000552909 RPL36AP83881 106 aaKnown RBP5.31□□□□□ -1.56
LIMA1-216ENST00000552909 RPL36ALQ969Q0 106 aaKnown RBP5.31□□□□□ -1.56
LIMA1-216ENST00000552909 X6R8D5 127 aa5.31□□□□□ -1.56
LIMA1-216ENST00000552909 RYR2Q92736 4967 aa5.3□□□□□ -1.56
LIMA1-216ENST00000552909 JMJD7-PLA2G4BH0Y9G9 81 aa5.3□□□□□ -1.56
LIMA1-216ENST00000552909 IGHV3-53P01767 116 aa5.3□□□□□ -1.56
LIMA1-216ENST00000552909 SLPIP03973 132 aa5.3□□□□□ -1.56
LIMA1-216ENST00000552909 LYPD5Q6UWN5 251 aa5.3□□□□□ -1.56
LIMA1-216ENST00000552909 IL17DQ8TAD2 202 aa5.3□□□□□ -1.56
LIMA1-216ENST00000552909 TRAV7A0A075B6U4 112 aa5.29□□□□□ -1.56
LIMA1-216ENST00000552909 BCE1O60756 84 aa5.29□□□□□ -1.56
LIMA1-216ENST00000552909 Q8NAQ8 132 aa5.29□□□□□ -1.56
LIMA1-216ENST00000552909 UBL5Q9BZL1 73 aa5.29□□□□□ -1.56
LIMA1-216ENST00000552909 KMT2AQ03164 3969 aa5.29□□□□□ -1.56
LIMA1-216ENST00000552909 IGHV4-28A0A0C4DH34 117 aa5.29□□□□□ -1.56
LIMA1-216ENST00000552909 SS18Q15532 418 aa5.29□□□□□ -1.56
LIMA1-216ENST00000552909 DNAH1Q9P2D7 4330 aa5.28□□□□□ -1.56
LIMA1-216ENST00000552909 LINC00158P58513 81 aa5.28□□□□□ -1.56
LIMA1-216ENST00000552909 KLKP1Q107X0 134 aa5.28□□□□□ -1.56
LIMA1-216ENST00000552909 FP248Q71RG6 208 aaPredicted RBP5.28□□□□□ -1.56
LIMA1-216ENST00000552909 C11orf72Q8NBR9 251 aa5.28□□□□□ -1.56
LIMA1-216ENST00000552909 NANOS2P60321 138 aaKnown RBP5.28□□□□□ -1.56
LIMA1-216ENST00000552909 COX7B2Q8TF08 81 aa5.28□□□□□ -1.56
LIMA1-216ENST00000552909 CCL18P55774 89 aa5.27□□□□□ -1.57
LIMA1-216ENST00000552909 C11orf68Q9H3H3 251 aaKnown RBP5.27□□□□□ -1.57
LIMA1-216ENST00000552909 PAX4O43316 350 aa5.26□□□□□ -1.57
LIMA1-216ENST00000552909 MIFP14174 115 aa5.26□□□□□ -1.57
LIMA1-216ENST00000552909 C11orf45Q8TAV5 145 aa5.26□□□□□ -1.57
LIMA1-216ENST00000552909 CDC42SE2Q9NRR3 84 aa5.26□□□□□ -1.57
LIMA1-216ENST00000552909 CELA1Q9UNI1 258 aa5.26□□□□□ -1.57
LIMA1-216ENST00000552909 V9GYY9 64 aa5.26□□□□□ -1.57
LIMA1-216ENST00000552909 TMEM256-PLSCR3K7ERE1 68 aa5.26□□□□□ -1.57
LIMA1-216ENST00000552909 LINC00167Q96N53 147 aa5.26□□□□□ -1.57
LIMA1-216ENST00000552909 NOP10Q9NPE3 64 aaKnown RBP5.26□□□□□ -1.57
LIMA1-216ENST00000552909 TOMM7Q9P0U1 55 aa5.26□□□□□ -1.57
LIMA1-216ENST00000552909 TRGV1A0A0A0MS02 117 aa5.25□□□□□ -1.57
LIMA1-216ENST00000552909 F8WEM9 126 aa5.25□□□□□ -1.57
LIMA1-216ENST00000552909 SEC61GP60059 68 aa5.25□□□□□ -1.57
LIMA1-216ENST00000552909 RBM3P98179 157 aaKnown RBP5.25□□□□□ -1.57
LIMA1-216ENST00000552909 BRK1Q8WUW1 75 aa5.25□□□□□ -1.57
LIMA1-216ENST00000552909 RMI2Q96E14 147 aa5.25□□□□□ -1.57
LIMA1-216ENST00000552909 C16orf74Q96GX8 76 aa5.25□□□□□ -1.57
LIMA1-216ENST00000552909 SNURFQ9Y675 71 aa5.25□□□□□ -1.57
LIMA1-216ENST00000552909 VPS13DQ5THJ4 4388 aa5.25□□□□□ -1.57
LIMA1-216ENST00000552909 TRBV7-6A0A0J9YX20 115 aa5.25□□□□□ -1.57
LIMA1-216ENST00000552909 PLAC8L1A1L4L8 177 aa5.25□□□□□ -1.57
LIMA1-216ENST00000552909 NDUFC1O43677 76 aa5.25□□□□□ -1.57
LIMA1-216ENST00000552909 C1orf195Q5TG92 126 aa5.25□□□□□ -1.57
LIMA1-216ENST00000552909 ALMS1Q8TCU4 4167 aa5.24□□□□□ -1.57
LIMA1-216ENST00000552909 TRBV6-4A0A1B0GX49 114 aa5.24□□□□□ -1.57
LIMA1-216ENST00000552909 IBA57-AS1B1ANH7 110 aa5.24□□□□□ -1.57
LIMA1-216ENST00000552909 ATP5EP56381 51 aaPredicted RBP5.24□□□□□ -1.57
LIMA1-216ENST00000552909 Q6ZTC4 211 aa5.24□□□□□ -1.57
LIMA1-216ENST00000552909 Q6ZTI0 123 aa5.24□□□□□ -1.57
LIMA1-216ENST00000552909 Q8N814 137 aa5.23□□□□□ -1.57
LIMA1-216ENST00000552909 K7EQD1 137 aa5.23□□□□□ -1.57
LIMA1-216ENST00000552909 UBE2L6O14933 153 aa5.23□□□□□ -1.57
LIMA1-216ENST00000552909 LINC00474Q9P2X8 69 aa5.23□□□□□ -1.57
LIMA1-216ENST00000552909 FRAS1Q86XX4 4008 aa5.23□□□□□ -1.57
LIMA1-216ENST00000552909 TRGV2A0A075B6R0 118 aa5.22□□□□□ -1.57
LIMA1-216ENST00000552909 A0A0U1RQV1 116 aa5.22□□□□□ -1.57
LIMA1-216ENST00000552909 NTM-AS1Q6ZSK4 140 aa5.22□□□□□ -1.57
LIMA1-216ENST00000552909 TRAV10A0A0B4J240 114 aa5.22□□□□□ -1.57
LIMA1-216ENST00000552909 NUPR2A6NF83 97 aa5.22□□□□□ -1.57
LIMA1-216ENST00000552909 LINC01547P58512 204 aaPredicted RBP5.22□□□□□ -1.57
LIMA1-216ENST00000552909 LCE6AA0A183 80 aa5.21□□□□□ -1.58
LIMA1-216ENST00000552909 DEFB130BP0DP73 79 aa5.21□□□□□ -1.58
LIMA1-216ENST00000552909 DEFB130AP0DP74 79 aa5.21□□□□□ -1.58
LIMA1-216ENST00000552909 TRBV10-1A0A0K0K1A3 114 aa5.21□□□□□ -1.58
LIMA1-216ENST00000552909 SPART-AS1P0CW21 52 aa5.21□□□□□ -1.58
LIMA1-216ENST00000552909 HAMPP81172 84 aa5.21□□□□□ -1.58
LIMA1-216ENST00000552909 Q6ZQT0 140 aa5.2□□□□□ -1.58
LIMA1-216ENST00000552909 LOC110117498A0A087WWA1 95 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 86.9 ms