RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 NBEAL2Q6ZNJ1 2754 aa3.91□□□□□ -1.78
LIMA1-203ENST00000547825 DSCR9P59020 149 aa3.9□□□□□ -1.78
LIMA1-203ENST00000547825 C4orf26Q17RF5 130 aa3.9□□□□□ -1.78
LIMA1-203ENST00000547825 SMIM1B2RUZ4 78 aa3.9□□□□□ -1.78
LIMA1-203ENST00000547825 C9orf116Q5BN46 136 aaPredicted RBP3.9□□□□□ -1.78
LIMA1-203ENST00000547825 LY6G6DO95868 133 aa3.9□□□□□ -1.79
LIMA1-203ENST00000547825 Q6ZQY7 126 aa3.9□□□□□ -1.79
LIMA1-203ENST00000547825 Q8N1X5 172 aa3.9□□□□□ -1.79
LIMA1-203ENST00000547825 NKAPP1Q8N9T2 125 aa3.9□□□□□ -1.79
LIMA1-203ENST00000547825 INAFM1C9JVW0 142 aa3.89□□□□□ -1.79
LIMA1-203ENST00000547825 SPAG11BQ08648 103 aa3.89□□□□□ -1.79
LIMA1-203ENST00000547825 VWFP04275 2813 aa3.89□□□□□ -1.79
LIMA1-203ENST00000547825 C3orf84H3BNL1 204 aa3.89□□□□□ -1.79
LIMA1-203ENST00000547825 HIGD2BQ4VC39 106 aa3.89□□□□□ -1.79
LIMA1-203ENST00000547825 FAM218AQ96MZ4 157 aa3.89□□□□□ -1.79
LIMA1-203ENST00000547825 SMR3AQ99954 134 aa3.89□□□□□ -1.79
LIMA1-203ENST00000547825 CHCHD7Q9BUK0 85 aa3.89□□□□□ -1.79
LIMA1-203ENST00000547825 F8WEM9 126 aa3.89□□□□□ -1.79
LIMA1-203ENST00000547825 LINC00337Q8N6G1 96 aa3.89□□□□□ -1.79
LIMA1-203ENST00000547825 CAMK2N2Q96S95 79 aa3.89□□□□□ -1.79
LIMA1-203ENST00000547825 TENM1Q9UKZ4 2725 aa3.89□□□□□ -1.79
LIMA1-203ENST00000547825 SEC61BP60468 96 aaKnown RBP3.89□□□□□ -1.79
LIMA1-203ENST00000547825 C10orf25Q5T742 122 aa3.89□□□□□ -1.79
LIMA1-203ENST00000547825 IGKV2D-24A0A075B6R9 120 aa3.88□□□□□ -1.79
LIMA1-203ENST00000547825 TRBV10-1A0A0K0K1A3 114 aa3.88□□□□□ -1.79
LIMA1-203ENST00000547825 TIMM17BO60830 172 aa3.88□□□□□ -1.79
LIMA1-203ENST00000547825 DEFB135Q30KP9 77 aa3.88□□□□□ -1.79
LIMA1-203ENST00000547825 AMELXQ99217 191 aa3.88□□□□□ -1.79
LIMA1-203ENST00000547825 CDC42SE2Q9NRR3 84 aa3.88□□□□□ -1.79
LIMA1-203ENST00000547825 DNAH9Q9NYC9 4486 aa3.88□□□□□ -1.79
LIMA1-203ENST00000547825 IGLV4-60A0A075B6I1 120 aa3.88□□□□□ -1.79
LIMA1-203ENST00000547825 SBSPONQ8IVN8 264 aa3.88□□□□□ -1.79
LIMA1-203ENST00000547825 SPTSSBQ8NFR3 76 aa3.88□□□□□ -1.79
LIMA1-203ENST00000547825 IBA57-AS1B1ANH7 110 aa3.88□□□□□ -1.79
LIMA1-203ENST00000547825 DEFB114Q30KQ6 69 aa3.88□□□□□ -1.79
LIMA1-203ENST00000547825 TRBV7-7A0A0K0K1E9 115 aa3.87□□□□□ -1.79
LIMA1-203ENST00000547825 NANOS2P60321 138 aaKnown RBP3.87□□□□□ -1.79
LIMA1-203ENST00000547825 CELA1Q9UNI1 258 aa3.87□□□□□ -1.79
LIMA1-203ENST00000547825 TRBV6-8A0A0A6YYG3 113 aa3.87□□□□□ -1.79
LIMA1-203ENST00000547825 KRTAP10-2P60368 255 aa3.87□□□□□ -1.79
LIMA1-203ENST00000547825 C16orf74Q96GX8 76 aa3.87□□□□□ -1.79
LIMA1-203ENST00000547825 BPY2O14599 106 aa3.87□□□□□ -1.79
LIMA1-203ENST00000547825 CMC4P56277 68 aaPredicted RBP3.87□□□□□ -1.79
LIMA1-203ENST00000547825 C1orf158Q8N1D5 194 aa3.87□□□□□ -1.79
LIMA1-203ENST00000547825 SMCR5Q8TEV8 140 aa3.87□□□□□ -1.79
LIMA1-203ENST00000547825 CHCHD10Q8WYQ3 142 aaPredicted RBP3.87□□□□□ -1.79
LIMA1-203ENST00000547825 DIRC1Q969H9 104 aa3.87□□□□□ -1.79
LIMA1-203ENST00000547825 RMI2Q96E14 147 aa3.87□□□□□ -1.79
LIMA1-203ENST00000547825 CSMD3Q7Z407 3707 aa3.86□□□□□ -1.79
LIMA1-203ENST00000547825 NDUFC2O95298 119 aa3.86□□□□□ -1.79
LIMA1-203ENST00000547825 CCKP06307 115 aa3.86□□□□□ -1.79
LIMA1-203ENST00000547825 UBE2BP63146 152 aa3.86□□□□□ -1.79
LIMA1-203ENST00000547825 FAM104AQ969W3 186 aa3.86□□□□□ -1.79
LIMA1-203ENST00000547825 A0A096LNI7 61 aa3.86□□□□□ -1.79
LIMA1-203ENST00000547825 FUSP35637 526 aaKnown RBP eCLIP3.86□□□□□ -1.79
LIMA1-203ENST00000547825 Q6JHZ5 121 aa3.86□□□□□ -1.79
LIMA1-203ENST00000547825 RPL28P46779 137 aaKnown RBP3.86□□□□□ -1.79
LIMA1-203ENST00000547825 Q8N9L7 120 aa3.86□□□□□ -1.79
LIMA1-203ENST00000547825 REG3AQ06141 175 aa3.85□□□□□ -1.79
LIMA1-203ENST00000547825 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP3.85□□□□□ -1.79
LIMA1-203ENST00000547825 LINC00959A0A1B0GUT2 108 aa3.85□□□□□ -1.79
LIMA1-203ENST00000547825 TMEM89A2RUT3 159 aa3.85□□□□□ -1.79
LIMA1-203ENST00000547825 NDUFC2-KCTD14E9PQ53 114 aa3.85□□□□□ -1.79
LIMA1-203ENST00000547825 NTM-AS1Q6ZSK4 140 aa3.85□□□□□ -1.79
LIMA1-203ENST00000547825 NOTCH1P46531 2555 aa3.85□□□□□ -1.79
LIMA1-203ENST00000547825 COX7BP24311 80 aa3.85□□□□□ -1.79
LIMA1-203ENST00000547825 FAM222AQ5U5X8 452 aa3.85□□□□□ -1.79
LIMA1-203ENST00000547825 PRR26Q8N8Z3 221 aa3.85□□□□□ -1.79
LIMA1-203ENST00000547825 PRO0255Q9UI72 69 aa3.85□□□□□ -1.79
LIMA1-203ENST00000547825 UNQ6190/PRO20217Q6UXQ8 127 aa3.84□□□□□ -1.79
LIMA1-203ENST00000547825 IGKV2-28A0A075B6P5 120 aa3.84□□□□□ -1.79
LIMA1-203ENST00000547825 ETDCA0A1B0GVM5 59 aa3.84□□□□□ -1.79
LIMA1-203ENST00000547825 IGKV2D-28P01615 120 aa3.84□□□□□ -1.79
LIMA1-203ENST00000547825 A0A0J9YWU9 116 aa3.84□□□□□ -1.8
LIMA1-203ENST00000547825 LITAFQ99732 161 aa3.84□□□□□ -1.8
LIMA1-203ENST00000547825 V9GYY9 64 aa3.84□□□□□ -1.8
LIMA1-203ENST00000547825 TRBV6-4A0A1B0GX49 114 aa3.83□□□□□ -1.8
LIMA1-203ENST00000547825 Q8N814 137 aa3.83□□□□□ -1.8
LIMA1-203ENST00000547825 PKD1L1Q8TDX9 2849 aa3.83□□□□□ -1.8
LIMA1-203ENST00000547825 C1orf195Q5TG92 126 aa3.83□□□□□ -1.8
LIMA1-203ENST00000547825 MEGF8Q7Z7M0 2845 aa3.83□□□□□ -1.8
LIMA1-203ENST00000547825 J3QLI3 93 aa3.83□□□□□ -1.8
LIMA1-203ENST00000547825 NDUFS5O43920 106 aa3.83□□□□□ -1.8
LIMA1-203ENST00000547825 MIFP14174 115 aa3.83□□□□□ -1.8
LIMA1-203ENST00000547825 HUWE1Q7Z6Z7 4374 aaKnown RBP3.83□□□□□ -1.8
LIMA1-203ENST00000547825 SMIM26A0A096LP01 95 aa3.82□□□□□ -1.8
LIMA1-203ENST00000547825 KRTAP19-4Q3LI73 84 aa3.82□□□□□ -1.8
LIMA1-203ENST00000547825 DEFB121Q5J5C9 76 aa3.82□□□□□ -1.8
LIMA1-203ENST00000547825 IGLV5-39A0A0G2JS06 123 aa3.82□□□□□ -1.8
LIMA1-203ENST00000547825 PSPHP1O15172 72 aa3.82□□□□□ -1.8
LIMA1-203ENST00000547825 CRYGAP11844 174 aa3.82□□□□□ -1.8
LIMA1-203ENST00000547825 ATP5EP2Q5VTU8 51 aa3.82□□□□□ -1.8
LIMA1-203ENST00000547825 C6orf223Q8N319 242 aa3.82□□□□□ -1.8
LIMA1-203ENST00000547825 FAM19A4Q96LR4 140 aa3.82□□□□□ -1.8
LIMA1-203ENST00000547825 PSCAO43653 123 aa3.82□□□□□ -1.8
LIMA1-203ENST00000547825 C4orf3Q8WVX3 66 aa3.82□□□□□ -1.8
LIMA1-203ENST00000547825 TRAV7A0A075B6U4 112 aa3.81□□□□□ -1.8
LIMA1-203ENST00000547825 C9orf129Q5T035 196 aaKnown RBP3.81□□□□□ -1.8
LIMA1-203ENST00000547825 FAM19A3Q7Z5A8 133 aa3.81□□□□□ -1.8
LIMA1-203ENST00000547825 WFDC10BQ8IUB3 73 aa3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms