RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 TRBV20OR9-2A0A075B6H5 130 aa2.18□□□□□ -2.06
SNHG1-220ENST00000544550 IGKV2-28A0A075B6P5 120 aa2.18□□□□□ -2.06
SNHG1-220ENST00000544550 F8VRH5 84 aa2.18□□□□□ -2.06
SNHG1-220ENST00000544550 IGKV2D-28P01615 120 aa2.18□□□□□ -2.06
SNHG1-220ENST00000544550 KRTAP10-12P60413 245 aa2.18□□□□□ -2.06
SNHG1-220ENST00000544550 CXCL6P80162 114 aa2.18□□□□□ -2.06
SNHG1-220ENST00000544550 SFT2D1Q8WV19 159 aa2.18□□□□□ -2.06
SNHG1-220ENST00000544550 HIGD2AQ9BW72 106 aa2.18□□□□□ -2.06
SNHG1-220ENST00000544550 KRTAP4-3Q9BYR4 195 aa2.18□□□□□ -2.06
SNHG1-220ENST00000544550 TMEM126AQ9H061 195 aa2.18□□□□□ -2.06
SNHG1-220ENST00000544550 TMEM191AQ9H0A3 160 aa2.18□□□□□ -2.06
SNHG1-220ENST00000544550 MANBALQ9NQG1 85 aa2.18□□□□□ -2.06
SNHG1-220ENST00000544550 TOMM7Q9P0U1 55 aa2.18□□□□□ -2.06
SNHG1-220ENST00000544550 SYNE2Q8WXH0 6885 aaKnown RBP2.18□□□□□ -2.06
SNHG1-220ENST00000544550 KRTAP9-6A8MVA2 160 aa2.17□□□□□ -2.06
SNHG1-220ENST00000544550 UMAD1C9J7I0 102 aa2.17□□□□□ -2.06
SNHG1-220ENST00000544550 PDE6DO43924 150 aa2.17□□□□□ -2.06
SNHG1-220ENST00000544550 IFI27P40305 119 aaPredicted RBP2.17□□□□□ -2.06
SNHG1-220ENST00000544550 SEC61GP60059 68 aa2.17□□□□□ -2.06
SNHG1-220ENST00000544550 KRTAP10-5P60370 271 aa2.17□□□□□ -2.06
SNHG1-220ENST00000544550 SSBP3-AS1Q7Z2R9 100 aa2.17□□□□□ -2.06
SNHG1-220ENST00000544550 MBD3L1Q8WWY6 194 aa2.17□□□□□ -2.06
SNHG1-220ENST00000544550 C2orf88Q9BSF0 95 aa2.17□□□□□ -2.06
SNHG1-220ENST00000544550 A0A1B0GV50 99 aa2.16□□□□□ -2.06
SNHG1-220ENST00000544550 A8MWL6 223 aa2.16□□□□□ -2.06
SNHG1-220ENST00000544550 TMEM238C9JI98 176 aa2.16□□□□□ -2.06
SNHG1-220ENST00000544550 RAB4AP20338 218 aa2.16□□□□□ -2.06
SNHG1-220ENST00000544550 RPL39P62891 51 aaKnown RBP2.16□□□□□ -2.06
SNHG1-220ENST00000544550 SEC11AP67812 179 aa2.16□□□□□ -2.06
SNHG1-220ENST00000544550 KRTAP20-1Q3LI63 56 aa2.16□□□□□ -2.06
SNHG1-220ENST00000544550 TEX43Q6ZNM6 134 aa2.16□□□□□ -2.06
SNHG1-220ENST00000544550 FAM213BQ8TBF2 198 aa2.16□□□□□ -2.06
SNHG1-220ENST00000544550 C20orf78Q9BR46 151 aa2.16□□□□□ -2.06
SNHG1-220ENST00000544550 A0A1B0GUT8 65 aa2.15□□□□□ -2.07
SNHG1-220ENST00000544550 LINC00862A6NCI5 91 aa2.15□□□□□ -2.07
SNHG1-220ENST00000544550 TEX46H3BTG2 121 aa2.15□□□□□ -2.07
SNHG1-220ENST00000544550 M0R378 163 aa2.15□□□□□ -2.07
SNHG1-220ENST00000544550 GATCO43716 136 aaKnown RBP2.15□□□□□ -2.07
SNHG1-220ENST00000544550 ATP5LO75964 103 aa2.15□□□□□ -2.07
SNHG1-220ENST00000544550 MOBPQ13875 183 aa2.15□□□□□ -2.07
SNHG1-220ENST00000544550 Q6Q795 121 aa2.15□□□□□ -2.07
SNHG1-220ENST00000544550 FAM231DQ6ZW35 169 aa2.15□□□□□ -2.07
SNHG1-220ENST00000544550 AKAP14Q86UN6 197 aa2.15□□□□□ -2.07
SNHG1-220ENST00000544550 AMN1Q8IY45 258 aa2.15□□□□□ -2.07
SNHG1-220ENST00000544550 FAM104AQ969W3 186 aa2.15□□□□□ -2.07
SNHG1-220ENST00000544550 TMEM141Q96I45 108 aa2.15□□□□□ -2.07
SNHG1-220ENST00000544550 LIMD2Q9BT23 127 aa2.15□□□□□ -2.07
SNHG1-220ENST00000544550 MED9Q9NWA0 146 aa2.15□□□□□ -2.07
SNHG1-220ENST00000544550 GNG13Q9P2W3 67 aa2.15□□□□□ -2.07
SNHG1-220ENST00000544550 MACF1Q9UPN3 7388 aaKnown RBP2.15□□□□□ -2.07
SNHG1-220ENST00000544550 TRBV24-1A0A075B6N3 115 aa2.14□□□□□ -2.07
SNHG1-220ENST00000544550 FXYD6-FXYD2A0A087WZ82 144 aa2.14□□□□□ -2.07
SNHG1-220ENST00000544550 A0A1B0GWB2 263 aa2.14□□□□□ -2.07
SNHG1-220ENST00000544550 C9orf92A6NGG3 77 aa2.14□□□□□ -2.07
SNHG1-220ENST00000544550 SMKR1H3BMG3 65 aa2.14□□□□□ -2.07
SNHG1-220ENST00000544550 IGLV6-57P01721 117 aa2.14□□□□□ -2.07
SNHG1-220ENST00000544550 HERVK_113P63121 156 aa2.14□□□□□ -2.07
SNHG1-220ENST00000544550 LINC00483Q53H64 154 aa2.14□□□□□ -2.07
SNHG1-220ENST00000544550 LINC00299Q6ZSB3 139 aa2.14□□□□□ -2.07
SNHG1-220ENST00000544550 S100ZQ8WXG8 99 aa2.14□□□□□ -2.07
SNHG1-220ENST00000544550 EIF5A2Q9GZV4 153 aaKnown RBP2.14□□□□□ -2.07
SNHG1-220ENST00000544550 FLGP20930 4061 aaPredicted RBP2.13□□□□□ -2.07
SNHG1-220ENST00000544550 K7EN84 100 aa2.13□□□□□ -2.07
SNHG1-220ENST00000544550 SCO1O75880 301 aa2.13□□□□□ -2.07
SNHG1-220ENST00000544550 GIPP09681 153 aaPredicted RBP2.13□□□□□ -2.07
SNHG1-220ENST00000544550 RAB5AP20339 215 aa2.13□□□□□ -2.07
SNHG1-220ENST00000544550 RPL37P61927 97 aaKnown RBP2.13□□□□□ -2.07
SNHG1-220ENST00000544550 KRTAP19-6Q3LI70 58 aa2.13□□□□□ -2.07
SNHG1-220ENST00000544550 FAM19A3Q7Z5A8 133 aa2.13□□□□□ -2.07
SNHG1-220ENST00000544550 SMIM2Q9BVW6 85 aa2.13□□□□□ -2.07
SNHG1-220ENST00000544550 C20orf202A1L168 122 aa2.12□□□□□ -2.07
SNHG1-220ENST00000544550 HIGD1CA8MV81 97 aa2.12□□□□□ -2.07
SNHG1-220ENST00000544550 SERF1AO75920 110 aa2.12□□□□□ -2.07
SNHG1-220ENST00000544550 CKS2P33552 79 aa2.12□□□□□ -2.07
SNHG1-220ENST00000544550 RAB5BP61020 215 aa2.12□□□□□ -2.07
SNHG1-220ENST00000544550 PDZD11Q5EBL8 140 aa2.12□□□□□ -2.07
SNHG1-220ENST00000544550 COX7B2Q8TF08 81 aa2.12□□□□□ -2.07
SNHG1-220ENST00000544550 HIST1H4GQ99525 98 aa2.12□□□□□ -2.07
SNHG1-220ENST00000544550 TIMM17AQ99595 171 aa2.12□□□□□ -2.07
SNHG1-220ENST00000544550 ARPC5O15511 151 aa2.11□□□□□ -2.07
SNHG1-220ENST00000544550 SNAPINO95295 136 aa2.11□□□□□ -2.07
SNHG1-220ENST00000544550 S100A12P80511 92 aa2.11□□□□□ -2.07
SNHG1-220ENST00000544550 COX17Q14061 63 aa2.11□□□□□ -2.07
SNHG1-220ENST00000544550 MRPL51Q4U2R6 128 aaKnown RBP2.11□□□□□ -2.07
SNHG1-220ENST00000544550 Q5BKY6 102 aa2.11□□□□□ -2.07
SNHG1-220ENST00000544550 C9orf153Q5TBE3 101 aa2.11□□□□□ -2.07
SNHG1-220ENST00000544550 FAM104BQ5XKR9 115 aa2.11□□□□□ -2.07
SNHG1-220ENST00000544550 SMCR5Q8TEV8 140 aa2.11□□□□□ -2.07
SNHG1-220ENST00000544550 AMELXQ99217 191 aa2.11□□□□□ -2.07
SNHG1-220ENST00000544550 CDKN2A-AS1Q9UH64 79 aa2.11□□□□□ -2.07
SNHG1-220ENST00000544550 ETDCA0A1B0GVM5 59 aa2.1□□□□□ -2.07
SNHG1-220ENST00000544550 A0A1B0GW15 77 aa2.1□□□□□ -2.07
SNHG1-220ENST00000544550 PPBPP02775 128 aa2.1□□□□□ -2.07
SNHG1-220ENST00000544550 MT2AP02795 61 aa2.1□□□□□ -2.07
SNHG1-220ENST00000544550 KRTAP10-10P60014 251 aa2.1□□□□□ -2.07
SNHG1-220ENST00000544550 RAB14P61106 215 aa2.1□□□□□ -2.07
SNHG1-220ENST00000544550 ZNF345Q14585 488 aa2.1□□□□□ -2.07
SNHG1-220ENST00000544550 LCE3CQ5T5A8 94 aa2.1□□□□□ -2.07
SNHG1-220ENST00000544550 SND1-IT1Q9HBX3 110 aa2.1□□□□□ -2.07
SNHG1-220ENST00000544550 CYSLTR1Q9Y271 337 aa2.1□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 82.3 ms