RNA–Protein interactions for RNA: ENST00000544268.5

CHFR-223, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 2,412 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-223	ENST00000544268	TRBV6-4	A0A1B0GX49	114 aa		10.37	□□□□□ -0.75
CHFR-223	ENST00000544268	GHRH	P01286	108 aa		10.37	□□□□□ -0.75
CHFR-223	ENST00000544268	CLPSL2	Q6UWE3	100 aa		10.37	□□□□□ -0.75
CHFR-223	ENST00000544268	FAM19A3	Q7Z5A8	133 aa		10.37	□□□□□ -0.75
CHFR-223	ENST00000544268	C11orf68	Q9H3H3	251 aa	Known RBP	10.36	□□□□□ -0.75
CHFR-223	ENST00000544268	SERP1	Q9Y6X1	66 aa		10.36	□□□□□ -0.75
CHFR-223	ENST00000544268	TRBV6-8	A0A0A6YYG3	113 aa		10.36	□□□□□ -0.75
CHFR-223	ENST00000544268	S100A7L2	Q5SY68	101 aa		10.36	□□□□□ -0.75
CHFR-223	ENST00000544268	LINC00337	Q8N6G1	96 aa		10.36	□□□□□ -0.75
CHFR-223	ENST00000544268	NBEAL1	Q6ZS30	2694 aa		10.36	□□□□□ -0.75
CHFR-223	ENST00000544268	FP248	Q71RG6	208 aa	Predicted RBP	10.35	□□□□□ -0.75
CHFR-223	ENST00000544268	ZNF561-AS1	K7EIQ3	104 aa		10.35	□□□□□ -0.75
CHFR-223	ENST00000544268	ATP5EP2	Q5VTU8	51 aa		10.35	□□□□□ -0.75
CHFR-223	ENST00000544268		Q8N3U1	123 aa		10.35	□□□□□ -0.75
CHFR-223	ENST00000544268	BRK1	Q8WUW1	75 aa		10.35	□□□□□ -0.75
CHFR-223	ENST00000544268	SMIM11B	Q8TCY0	68 aa		10.34	□□□□□ -0.75
CHFR-223	ENST00000544268	CCK	P06307	115 aa		10.34	□□□□□ -0.75
CHFR-223	ENST00000544268	IGKV2-28	A0A075B6P5	120 aa		10.33	□□□□□ -0.76
CHFR-223	ENST00000544268	NCR3	O14931	201 aa		10.33	□□□□□ -0.76
CHFR-223	ENST00000544268	IGKV2D-28	P01615	120 aa		10.33	□□□□□ -0.76
CHFR-223	ENST00000544268	MGAM2	Q2M2H8	2515 aa		10.33	□□□□□ -0.76
CHFR-223	ENST00000544268	GYPE	P15421	78 aa		10.33	□□□□□ -0.76
CHFR-223	ENST00000544268	DNHD1	Q96M86	4753 aa		10.33	□□□□□ -0.76
CHFR-223	ENST00000544268	XCL1	P47992	114 aa		10.32	□□□□□ -0.76
CHFR-223	ENST00000544268	MIR7-3HG	Q8N6C7	128 aa		10.32	□□□□□ -0.76
CHFR-223	ENST00000544268	RETN	Q9HD89	108 aa		10.32	□□□□□ -0.76
CHFR-223	ENST00000544268	IGHV4-28	A0A0C4DH34	117 aa		10.32	□□□□□ -0.76
CHFR-223	ENST00000544268	C20orf197	Q8N268	126 aa		10.32	□□□□□ -0.76
CHFR-223	ENST00000544268	SND1-IT1	Q9HBX3	110 aa		10.32	□□□□□ -0.76
CHFR-223	ENST00000544268	TRAV23DV6	A0A075B6W5	121 aa		10.31	□□□□□ -0.76
CHFR-223	ENST00000544268	SMIM26	A0A096LP01	95 aa		10.31	□□□□□ -0.76
CHFR-223	ENST00000544268	LECT2	O14960	151 aa		10.31	□□□□□ -0.76
CHFR-223	ENST00000544268	COX7B2	Q8TF08	81 aa		10.31	□□□□□ -0.76
CHFR-223	ENST00000544268	IGHV3OR16-9	A0A0B4J2B5	98 aa		10.31	□□□□□ -0.76
CHFR-223	ENST00000544268	LINC00612	Q8N6U2	182 aa		10.31	□□□□□ -0.76
CHFR-223	ENST00000544268		Q8NAQ8	132 aa		10.31	□□□□□ -0.76
CHFR-223	ENST00000544268	LYPD5	Q6UWN5	251 aa		10.3	□□□□□ -0.76
CHFR-223	ENST00000544268	TRBV10-3	A0A0K0K1G6	114 aa		10.29	□□□□□ -0.76
CHFR-223	ENST00000544268	PRB2	P02812	416 aa	Predicted RBP	10.29	□□□□□ -0.76
CHFR-223	ENST00000544268	MIF	P14174	115 aa		10.28	□□□□□ -0.76
CHFR-223	ENST00000544268	ORMDL1	Q9P0S3	153 aa		10.28	□□□□□ -0.76
CHFR-223	ENST00000544268		H7BZZ5	65 aa		10.27	□□□□□ -0.76
CHFR-223	ENST00000544268	LINC00158	P58513	81 aa		10.27	□□□□□ -0.76
CHFR-223	ENST00000544268	SS18	Q15532	418 aa		10.27	□□□□□ -0.76
CHFR-223	ENST00000544268	LINC00959	A0A1B0GUT2	108 aa		10.27	□□□□□ -0.77
CHFR-223	ENST00000544268	LYRM9	A8MSI8	78 aa		10.27	□□□□□ -0.77
CHFR-223	ENST00000544268	BCE1	O60756	84 aa		10.27	□□□□□ -0.77
CHFR-223	ENST00000544268	PMAIP1	Q13794	54 aa		10.27	□□□□□ -0.77
CHFR-223	ENST00000544268	CELA1	Q9UNI1	258 aa		10.27	□□□□□ -0.77
CHFR-223	ENST00000544268	ENHO	Q6UWT2	76 aa		10.26	□□□□□ -0.77
CHFR-223	ENST00000544268	SLPI	P03973	132 aa		10.26	□□□□□ -0.77
CHFR-223	ENST00000544268	JMJD7-PLA2G4B	H0Y9G9	81 aa		10.25	□□□□□ -0.77
CHFR-223	ENST00000544268	IGLV10-54	A0A075B6I4	117 aa		10.25	□□□□□ -0.77
CHFR-223	ENST00000544268	TENM3	Q9P273	2699 aa		10.24	□□□□□ -0.77
CHFR-223	ENST00000544268	TRAV7	A0A075B6U4	112 aa		10.24	□□□□□ -0.77
CHFR-223	ENST00000544268	CCL18	P55774	89 aa		10.24	□□□□□ -0.77
CHFR-223	ENST00000544268		A0A087WZ39	114 aa		10.24	□□□□□ -0.77
CHFR-223	ENST00000544268	DAD1	P61803	113 aa		10.22	□□□□□ -0.77
CHFR-223	ENST00000544268	KLKP1	Q107X0	134 aa		10.22	□□□□□ -0.77
CHFR-223	ENST00000544268	LINC00167	Q96N53	147 aa		10.22	□□□□□ -0.77
CHFR-223	ENST00000544268	UBL5	Q9BZL1	73 aa		10.22	□□□□□ -0.77
CHFR-223	ENST00000544268		K7EIL1	84 aa		10.21	□□□□□ -0.77
CHFR-223	ENST00000544268	PAX4	O43316	350 aa		10.21	□□□□□ -0.77
CHFR-223	ENST00000544268	SPART-AS1	P0CW21	52 aa		10.21	□□□□□ -0.77
CHFR-223	ENST00000544268	PRR3	P79522	188 aa	Known RBP	10.21	□□□□□ -0.77
CHFR-223	ENST00000544268	CD164	Q04900	197 aa		10.21	□□□□□ -0.77
CHFR-223	ENST00000544268	LINC00269	Q8N2A0	174 aa		10.21	□□□□□ -0.77
CHFR-223	ENST00000544268	PRO0255	Q9UI72	69 aa		10.21	□□□□□ -0.78
CHFR-223	ENST00000544268	HTN3	P15516	51 aa		10.2	□□□□□ -0.78
CHFR-223	ENST00000544268	LINC00474	Q9P2X8	69 aa		10.2	□□□□□ -0.78
CHFR-223	ENST00000544268	KPRP	Q5T749	579 aa	Predicted RBP	10.19	□□□□□ -0.78
CHFR-223	ENST00000544268	KRTAP21-3	Q3LHN1	58 aa		10.19	□□□□□ -0.78
CHFR-223	ENST00000544268	C9orf116	Q5BN46	136 aa	Predicted RBP	10.18	□□□□□ -0.78
CHFR-223	ENST00000544268	IBA57-AS1	B1ANH7	110 aa		10.18	□□□□□ -0.78
CHFR-223	ENST00000544268	TMEM256-PLSCR3	K7ERE1	68 aa		10.18	□□□□□ -0.78
CHFR-223	ENST00000544268	C4orf48	Q5BLP8	95 aa		10.17	□□□□□ -0.78
CHFR-223	ENST00000544268	ANG	P03950	147 aa	Known RBP	10.16	□□□□□ -0.78
CHFR-223	ENST00000544268	HUWE1	Q7Z6Z7	4374 aa	Known RBP	10.15	□□□□□ -0.78
CHFR-223	ENST00000544268		Q8N814	137 aa		10.15	□□□□□ -0.79
CHFR-223	ENST00000544268		A0A1B0GUV1	79 aa		10.14	□□□□□ -0.79
CHFR-223	ENST00000544268		A0A0J9YWU9	116 aa		10.14	□□□□□ -0.79
CHFR-223	ENST00000544268		Q8NDZ9	215 aa		10.13	□□□□□ -0.79
CHFR-223	ENST00000544268	CHCHD10	Q8WYQ3	142 aa	Predicted RBP	10.13	□□□□□ -0.79
CHFR-223	ENST00000544268		F8WEM9	126 aa		10.13	□□□□□ -0.79
CHFR-223	ENST00000544268	NDUFC1	O43677	76 aa		10.13	□□□□□ -0.79
CHFR-223	ENST00000544268		Q6ZRU5	148 aa		10.13	□□□□□ -0.79
CHFR-223	ENST00000544268	RMI2	Q96E14	147 aa		10.13	□□□□□ -0.79
CHFR-223	ENST00000544268	C6orf223	Q8N319	242 aa		10.12	□□□□□ -0.79
CHFR-223	ENST00000544268	SNURF	Q9Y675	71 aa		10.12	□□□□□ -0.79
CHFR-223	ENST00000544268	TRBV7-6	A0A0J9YX20	115 aa		10.12	□□□□□ -0.79
CHFR-223	ENST00000544268	REG3A	Q06141	175 aa		10.12	□□□□□ -0.79
CHFR-223	ENST00000544268	KIAA0087	Q14695	138 aa		10.12	□□□□□ -0.79
CHFR-223	ENST00000544268	TM2D3	Q9BRN9	247 aa		10.12	□□□□□ -0.79
CHFR-223	ENST00000544268	ATP5E	P56381	51 aa	Predicted RBP	10.11	□□□□□ -0.79
CHFR-223	ENST00000544268	PRR15	Q8IV56	129 aa		10.11	□□□□□ -0.79
CHFR-223	ENST00000544268	TRAV10	A0A0B4J240	114 aa		10.11	□□□□□ -0.79
CHFR-223	ENST00000544268	RBM3	P98179	157 aa	Known RBP	10.11	□□□□□ -0.79
CHFR-223	ENST00000544268		Q6ZTC4	211 aa		10.11	□□□□□ -0.79
CHFR-223	ENST00000544268	C10orf25	Q5T742	122 aa		10.1	□□□□□ -0.79
CHFR-223	ENST00000544268		Q8IZM0	81 aa		10.1	□□□□□ -0.79

Retrieved 100 of 20,778 RNA–protein pairs in 174.7 ms