RNA–Protein interactions for RNA: ENST00000543710.5

VPS13D-211, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 1 (best)

Gene VPS13D, Length 5,676 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-211ENST00000543710 PRO0461Q9UI25 63 aa5.44□□□□□ -1.54
VPS13D-211ENST00000543710 SHANK1Q9Y566 2161 aa5.44□□□□□ -1.54
VPS13D-211ENST00000543710 LINC00208Q96KT6 92 aa5.43□□□□□ -1.54
VPS13D-211ENST00000543710 A0A096LNI7 61 aa5.43□□□□□ -1.54
VPS13D-211ENST00000543710 USP9XQ93008 2570 aaPredicted RBP5.43□□□□□ -1.54
VPS13D-211ENST00000543710 IGLV9-49A0A0B4J1Y8 123 aa5.43□□□□□ -1.54
VPS13D-211ENST00000543710 A8MTW9 85 aa5.43□□□□□ -1.54
VPS13D-211ENST00000543710 PCNTO95613 3336 aa5.43□□□□□ -1.54
VPS13D-211ENST00000543710 A0A1W2PPR1 153 aa5.43□□□□□ -1.54
VPS13D-211ENST00000543710 SPINK6Q6UWN8 80 aa5.43□□□□□ -1.54
VPS13D-211ENST00000543710 LINC00315P59091 139 aa5.43□□□□□ -1.54
VPS13D-211ENST00000543710 EPG5Q9HCE0 2579 aa5.42□□□□□ -1.54
VPS13D-211ENST00000543710 TRBV7-4A0A0J9YYF1 115 aa5.42□□□□□ -1.54
VPS13D-211ENST00000543710 MYO9AB2RTY4 2548 aa5.42□□□□□ -1.54
VPS13D-211ENST00000543710 LCE6AA0A183 80 aa5.42□□□□□ -1.54
VPS13D-211ENST00000543710 LINC01554Q52M75 96 aa5.42□□□□□ -1.54
VPS13D-211ENST00000543710 TET2Q6N021 2002 aaPredicted RBP5.42□□□□□ -1.54
VPS13D-211ENST00000543710 NACAE9PAV3 2078 aa5.41□□□□□ -1.54
VPS13D-211ENST00000543710 LOC101927531A0A1B0GV80 90 aa5.41□□□□□ -1.54
VPS13D-211ENST00000543710 PCNX3Q9H6A9 2034 aa5.41□□□□□ -1.54
VPS13D-211ENST00000543710 CASC10Q5T4H9 136 aa5.41□□□□□ -1.54
VPS13D-211ENST00000543710 C1orf64Q8NEQ6 169 aa5.41□□□□□ -1.54
VPS13D-211ENST00000543710 TYMSOSQ8TAI1 123 aa5.41□□□□□ -1.54
VPS13D-211ENST00000543710 LINC00846Q9NV44 126 aa5.41□□□□□ -1.54
VPS13D-211ENST00000543710 FN1P02751 2386 aaKnown RBP5.41□□□□□ -1.54
VPS13D-211ENST00000543710 LINC00476Q8WZB0 136 aa5.41□□□□□ -1.54
VPS13D-211ENST00000543710 TANC2Q9HCD6 1990 aa5.4□□□□□ -1.54
VPS13D-211ENST00000543710 LINC01600Q96MT4 127 aa5.4□□□□□ -1.54
VPS13D-211ENST00000543710 TRAV22A0A0B4J277 110 aa5.4□□□□□ -1.55
VPS13D-211ENST00000543710 IGHV6-1A0A0B4J1U7 121 aa5.4□□□□□ -1.55
VPS13D-211ENST00000543710 IGHV3OR16-9A0A0B4J2B5 98 aa5.39□□□□□ -1.55
VPS13D-211ENST00000543710 C22orf24Q9Y442 160 aa5.39□□□□□ -1.55
VPS13D-211ENST00000543710 SPAG11AQ6PDA7 123 aa5.39□□□□□ -1.55
VPS13D-211ENST00000543710 Q6ZRX8 168 aa5.39□□□□□ -1.55
VPS13D-211ENST00000543710 SMCR5Q8TEV8 140 aa5.38□□□□□ -1.55
VPS13D-211ENST00000543710 LINC00167Q96N53 147 aa5.38□□□□□ -1.55
VPS13D-211ENST00000543710 SPTBN4Q9H254 2564 aa5.38□□□□□ -1.55
VPS13D-211ENST00000543710 Q6ZRU5 148 aa5.38□□□□□ -1.55
VPS13D-211ENST00000543710 ATP11AUNQ6ZP68 121 aa5.37□□□□□ -1.55
VPS13D-211ENST00000543710 IGLV6-57P01721 117 aa5.37□□□□□ -1.55
VPS13D-211ENST00000543710 PSPHP1O15172 72 aa5.37□□□□□ -1.55
VPS13D-211ENST00000543710 SMIM29Q86T20 159 aa5.36□□□□□ -1.55
VPS13D-211ENST00000543710 A0A1B0GU69 56 aa5.36□□□□□ -1.55
VPS13D-211ENST00000543710 KIAA0087Q14695 138 aa5.35□□□□□ -1.55
VPS13D-211ENST00000543710 TLX1NBP0CAT3 122 aa5.35□□□□□ -1.55
VPS13D-211ENST00000543710 RETNLBQ9BQ08 111 aa5.35□□□□□ -1.55
VPS13D-211ENST00000543710 MED12LQ86YW9 2145 aa5.35□□□□□ -1.55
VPS13D-211ENST00000543710 SMCPP49901 116 aaPredicted RBP5.35□□□□□ -1.55
VPS13D-211ENST00000543710 POLQO75417 2590 aa5.35□□□□□ -1.55
VPS13D-211ENST00000543710 EML5Q05BV3 1969 aa5.35□□□□□ -1.55
VPS13D-211ENST00000543710 C7orf65Q6ZTY9 151 aa5.34□□□□□ -1.55
VPS13D-211ENST00000543710 A0A087WSZ3 146 aa5.34□□□□□ -1.55
VPS13D-211ENST00000543710 A0A087WVE0 104 aa5.34□□□□□ -1.55
VPS13D-211ENST00000543710 A8MWP4 228 aa5.34□□□□□ -1.55
VPS13D-211ENST00000543710 M0R2T5 61 aa5.34□□□□□ -1.55
VPS13D-211ENST00000543710 LITAFQ99732 161 aa5.34□□□□□ -1.55
VPS13D-211ENST00000543710 TM2D3Q9BRN9 247 aa5.34□□□□□ -1.55
VPS13D-211ENST00000543710 C6orf48Q9UBA6 75 aa5.34□□□□□ -1.55
VPS13D-211ENST00000543710 LINC00528Q8N1L1 170 aa5.33□□□□□ -1.56
VPS13D-211ENST00000543710 C9orf116Q5BN46 136 aaPredicted RBP5.33□□□□□ -1.56
VPS13D-211ENST00000543710 COL27A1Q8IZC6 1860 aaPredicted RBP5.33□□□□□ -1.56
VPS13D-211ENST00000543710 LCE2DQ5TA82 110 aaPredicted RBP5.33□□□□□ -1.56
VPS13D-211ENST00000543710 CSNK1G2-AS1Q8NCQ2 148 aa5.33□□□□□ -1.56
VPS13D-211ENST00000543710 DNAH10OSP0CZ25 163 aa5.32□□□□□ -1.56
VPS13D-211ENST00000543710 TLN1Q9Y490 2541 aaKnown RBP5.32□□□□□ -1.56
VPS13D-211ENST00000543710 WIPF1O43516 503 aa5.32□□□□□ -1.56
VPS13D-211ENST00000543710 SPANXA2-OT1Q8N9U9 137 aa5.31□□□□□ -1.56
VPS13D-211ENST00000543710 KCNQ1DNQ9H478 68 aa5.31□□□□□ -1.56
VPS13D-211ENST00000543710 ZNF575Q86XF7 245 aa5.31□□□□□ -1.56
VPS13D-211ENST00000543710 X6R8D5 127 aa5.31□□□□□ -1.56
VPS13D-211ENST00000543710 KTN1-AS1Q86SY8 53 aa5.3□□□□□ -1.56
VPS13D-211ENST00000543710 OXTP01178 125 aa5.3□□□□□ -1.56
VPS13D-211ENST00000543710 LINC00313P59037 77 aa5.3□□□□□ -1.56
VPS13D-211ENST00000543710 LINC00612Q8N6U2 182 aa5.3□□□□□ -1.56
VPS13D-211ENST00000543710 IGLV5-37A0A075B6J1 123 aa5.29□□□□□ -1.56
VPS13D-211ENST00000543710 KLKP1Q107X0 134 aa5.29□□□□□ -1.56
VPS13D-211ENST00000543710 C19orf73Q9NVV2 129 aa5.29□□□□□ -1.56
VPS13D-211ENST00000543710 ANKRD11Q6UB99 2663 aaPredicted RBP5.29□□□□□ -1.56
VPS13D-211ENST00000543710 CEP350Q5VT06 3117 aa5.29□□□□□ -1.56
VPS13D-211ENST00000543710 SMR3BP02814 79 aaPredicted RBP5.29□□□□□ -1.56
VPS13D-211ENST00000543710 C9orf163Q8N9P6 203 aa5.28□□□□□ -1.56
VPS13D-211ENST00000543710 SSBP3-AS1Q7Z2R9 100 aa5.28□□□□□ -1.56
VPS13D-211ENST00000543710 IGLV1-50A0A075B6I6 118 aa5.28□□□□□ -1.56
VPS13D-211ENST00000543710 SPACA4Q8TDM5 124 aa5.28□□□□□ -1.56
VPS13D-211ENST00000543710 FAM218AQ96MZ4 157 aa5.28□□□□□ -1.56
VPS13D-211ENST00000543710 PSORS1C2Q9UIG4 136 aa5.28□□□□□ -1.56
VPS13D-211ENST00000543710 CENPFP49454 3210 aa5.28□□□□□ -1.56
VPS13D-211ENST00000543710 PRR3P79522 188 aaKnown RBP5.27□□□□□ -1.57
VPS13D-211ENST00000543710 RBM12B-AS1Q9P1G2 102 aa5.27□□□□□ -1.57
VPS13D-211ENST00000543710 PCOTHQ58A44 107 aa5.26□□□□□ -1.57
VPS13D-211ENST00000543710 Q8NAQ8 132 aa5.26□□□□□ -1.57
VPS13D-211ENST00000543710 MRPL34Q9BQ48 92 aaKnown RBP5.26□□□□□ -1.57
VPS13D-211ENST00000543710 LINC00304Q8N9R0 145 aa5.26□□□□□ -1.57
VPS13D-211ENST00000543710 KRTAP10-11P60412 298 aa5.26□□□□□ -1.57
VPS13D-211ENST00000543710 LINC00588Q9Y4M8 146 aa5.25□□□□□ -1.57
VPS13D-211ENST00000543710 OBSCN-AS1Q96MR7 158 aa5.25□□□□□ -1.57
VPS13D-211ENST00000543710 PTPRBP23467 1997 aa5.24□□□□□ -1.57
VPS13D-211ENST00000543710 A0A087WTM6 91 aa5.24□□□□□ -1.57
VPS13D-211ENST00000543710 PRM2P04554 102 aa5.24□□□□□ -1.57
VPS13D-211ENST00000543710 FAM104AQ969W3 186 aa5.24□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 58.4 ms