RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 ALKAL2Q6UX46 152 aa-0.32□□□□□ -2.46
VPS13A-213ENST00000539950 VAMP8Q9BV40 100 aa-0.32□□□□□ -2.46
VPS13A-213ENST00000539950 CRIPTQ9P021 101 aa-0.32□□□□□ -2.46
VPS13A-213ENST00000539950 PTPN23Q9H3S7 1636 aa-0.32□□□□□ -2.46
VPS13A-213ENST00000539950 TROQ12816 1431 aaPredicted RBP-0.32□□□□□ -2.46
VPS13A-213ENST00000539950 ADAMTS12P58397 1594 aa-0.32□□□□□ -2.46
VPS13A-213ENST00000539950 REV3LO60673 3130 aa-0.33□□□□□ -2.46
VPS13A-213ENST00000539950 PRKDCP78527 4128 aaKnown RBP-0.33□□□□□ -2.46
VPS13A-213ENST00000539950 PCNX1Q96RV3 2341 aa-0.33□□□□□ -2.46
VPS13A-213ENST00000539950 UQCRHP07919 91 aa-0.33□□□□□ -2.46
VPS13A-213ENST00000539950 LINC00032P0C843 101 aa-0.33□□□□□ -2.46
VPS13A-213ENST00000539950 SPRR2EP22531 72 aa-0.33□□□□□ -2.46
VPS13A-213ENST00000539950 RBP2P50120 134 aa-0.33□□□□□ -2.46
VPS13A-213ENST00000539950 H1FX-AS1Q4G0G2 97 aa-0.33□□□□□ -2.46
VPS13A-213ENST00000539950 MRPL34Q9BQ48 92 aaKnown RBP-0.33□□□□□ -2.46
VPS13A-213ENST00000539950 APLNQ9ULZ1 77 aa-0.33□□□□□ -2.46
VPS13A-213ENST00000539950 KNDC1Q76NI1 1749 aa-0.33□□□□□ -2.46
VPS13A-213ENST00000539950 C5P01031 1676 aa-0.33□□□□□ -2.46
VPS13A-213ENST00000539950 STAB2Q8WWQ8 2551 aa-0.34□□□□□ -2.46
VPS13A-213ENST00000539950 I3L3M4 83 aa-0.34□□□□□ -2.46
VPS13A-213ENST00000539950 CCL22O00626 93 aa-0.34□□□□□ -2.46
VPS13A-213ENST00000539950 CLIP1P30622 1438 aa-0.34□□□□□ -2.46
VPS13A-213ENST00000539950 ASIPP42127 132 aa-0.34□□□□□ -2.46
VPS13A-213ENST00000539950 DEFB135Q30KP9 77 aa-0.34□□□□□ -2.46
VPS13A-213ENST00000539950 DEFB107AQ8IZN7 70 aa-0.34□□□□□ -2.46
VPS13A-213ENST00000539950 C9orf62Q8N4C0 152 aa-0.34□□□□□ -2.46
VPS13A-213ENST00000539950 PMCHL2Q9BQD1 86 aa-0.34□□□□□ -2.46
VPS13A-213ENST00000539950 DPY30Q9C005 99 aa-0.34□□□□□ -2.46
VPS13A-213ENST00000539950 FXYD6Q9H0Q3 95 aa-0.34□□□□□ -2.46
VPS13A-213ENST00000539950 AP4S1Q9Y587 144 aa-0.34□□□□□ -2.46
VPS13A-213ENST00000539950 ALKQ9UM73 1620 aa-0.35□□□□□ -2.46
VPS13A-213ENST00000539950 MAGI2Q86UL8 1455 aa-0.35□□□□□ -2.46
VPS13A-213ENST00000539950 SVEP1Q4LDE5 3571 aa-0.35□□□□□ -2.46
VPS13A-213ENST00000539950 CEP162Q5TB80 1403 aa-0.35□□□□□ -2.47
VPS13A-213ENST00000539950 ATP6V1G2-DDX39BF2Z307 99 aa-0.35□□□□□ -2.47
VPS13A-213ENST00000539950 UBE2D4Q9Y2X8 147 aa-0.35□□□□□ -2.47
VPS13A-213ENST00000539950 ATP10BO94823 1461 aa-0.35□□□□□ -2.47
VPS13A-213ENST00000539950 ABCC10Q5T3U5 1492 aa-0.35□□□□□ -2.47
VPS13A-213ENST00000539950 MON2Q7Z3U7 1717 aa-0.35□□□□□ -2.47
VPS13A-213ENST00000539950 NBEAL1Q6ZS30 2694 aa-0.36□□□□□ -2.47
VPS13A-213ENST00000539950 CLTCQ00610 1675 aaKnown RBP-0.36□□□□□ -2.47
VPS13A-213ENST00000539950 CNOT1A5YKK6 2376 aaKnown RBP-0.36□□□□□ -2.47
VPS13A-213ENST00000539950 FLGP20930 4061 aaPredicted RBP-0.36□□□□□ -2.47
VPS13A-213ENST00000539950 S100A10P60903 97 aa-0.36□□□□□ -2.47
VPS13A-213ENST00000539950 GNGT1P63211 74 aa-0.36□□□□□ -2.47
VPS13A-213ENST00000539950 ETDBQ3ZM63 59 aa-0.36□□□□□ -2.47
VPS13A-213ENST00000539950 COX6B2Q6YFQ2 88 aa-0.36□□□□□ -2.47
VPS13A-213ENST00000539950 PSENENQ9NZ42 101 aa-0.36□□□□□ -2.47
VPS13A-213ENST00000539950 SETD2Q9BYW2 2564 aaPredicted RBP-0.36□□□□□ -2.47
VPS13A-213ENST00000539950 QSER1Q2KHR3 1735 aa-0.36□□□□□ -2.47
VPS13A-213ENST00000539950 CRYBG1Q9Y4K1 1723 aa-0.36□□□□□ -2.47
VPS13A-213ENST00000539950 PREX1Q8TCU6 1659 aa-0.37□□□□□ -2.47
VPS13A-213ENST00000539950 CICQ96RK0 1608 aaPredicted RBP-0.37□□□□□ -2.47
VPS13A-213ENST00000539950 PKHD1P08F94 4074 aa-0.37□□□□□ -2.47
VPS13A-213ENST00000539950 ANKRD26Q9UPS8 1709 aa-0.37□□□□□ -2.47
VPS13A-213ENST00000539950 SPTY2D1-AS1A0A0U1RR47 76 aa-0.37□□□□□ -2.47
VPS13A-213ENST00000539950 F8WEM9 126 aa-0.37□□□□□ -2.47
VPS13A-213ENST00000539950 IGLC2P0DOY2 106 aa-0.37□□□□□ -2.47
VPS13A-213ENST00000539950 IGLC3P0DOY3 106 aa-0.37□□□□□ -2.47
VPS13A-213ENST00000539950 LELP1Q5T871 98 aa-0.37□□□□□ -2.47
VPS13A-213ENST00000539950 ZNF720Q7Z2F6 126 aa-0.37□□□□□ -2.47
VPS13A-213ENST00000539950 HIGD1BQ9P298 99 aa-0.37□□□□□ -2.47
VPS13A-213ENST00000539950 CDKN2A-AS1Q9UH64 79 aa-0.37□□□□□ -2.47
VPS13A-213ENST00000539950 ATP7BP35670 1465 aa-0.37□□□□□ -2.47
VPS13A-213ENST00000539950 MYO3AQ8NEV4 1616 aa-0.38□□□□□ -2.47
VPS13A-213ENST00000539950 UQCRHLA0A096LP55 91 aa-0.38□□□□□ -2.47
VPS13A-213ENST00000539950 D6R8Y8 96 aa-0.38□□□□□ -2.47
VPS13A-213ENST00000539950 M0R143 59 aa-0.38□□□□□ -2.47
VPS13A-213ENST00000539950 NCMAPQ5T1S8 102 aa-0.38□□□□□ -2.47
VPS13A-213ENST00000539950 MUSTN1Q8IVN3 82 aa-0.38□□□□□ -2.47
VPS13A-213ENST00000539950 BAZ1AQ9NRL2 1556 aaPredicted RBP-0.38□□□□□ -2.47
VPS13A-213ENST00000539950 TGP01266 2768 aa-0.38□□□□□ -2.47
VPS13A-213ENST00000539950 KMT2CQ8NEZ4 4911 aaKnown RBP-0.38□□□□□ -2.47
VPS13A-213ENST00000539950 HERC1Q15751 4861 aa-0.38□□□□□ -2.47
VPS13A-213ENST00000539950 LAMA5O15230 3695 aa-0.39□□□□□ -2.47
VPS13A-213ENST00000539950 RGPD8O14715 1765 aaPredicted RBP-0.39□□□□□ -2.47
VPS13A-213ENST00000539950 RGPD5Q99666 1765 aa-0.39□□□□□ -2.47
VPS13A-213ENST00000539950 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP-0.39□□□□□ -2.47
VPS13A-213ENST00000539950 LEPROTL1O95214 131 aa-0.39□□□□□ -2.47
VPS13A-213ENST00000539950 GYPAP02724 150 aa-0.39□□□□□ -2.47
VPS13A-213ENST00000539950 MT1AP04731 61 aa-0.39□□□□□ -2.47
VPS13A-213ENST00000539950 S100A8P05109 93 aa-0.39□□□□□ -2.47
VPS13A-213ENST00000539950 HMGN2P05204 90 aaKnown RBP-0.39□□□□□ -2.47
VPS13A-213ENST00000539950 DEFB112Q30KQ8 113 aa-0.39□□□□□ -2.47
VPS13A-213ENST00000539950 KRTAP19-8Q3LI54 63 aa-0.39□□□□□ -2.47
VPS13A-213ENST00000539950 NMSQ5H8A3 153 aa-0.39□□□□□ -2.47
VPS13A-213ENST00000539950 COL5A1-AS1Q5SY13 56 aa-0.39□□□□□ -2.47
VPS13A-213ENST00000539950 SNHG12Q9BXW3 62 aa-0.39□□□□□ -2.47
VPS13A-213ENST00000539950 AKAP13Q12802 2813 aa-0.39□□□□□ -2.47
VPS13A-213ENST00000539950 BCORQ6W2J9 1755 aa-0.4□□□□□ -2.47
VPS13A-213ENST00000539950 CEP170BQ9Y4F5 1589 aaPredicted RBP-0.4□□□□□ -2.47
VPS13A-213ENST00000539950 ANKRD36A6QL64 1941 aa-0.4□□□□□ -2.47
VPS13A-213ENST00000539950 LRRC9Q6ZRR7 1453 aa-0.4□□□□□ -2.47
VPS13A-213ENST00000539950 PKD1L3Q7Z443 1732 aa-0.4□□□□□ -2.47
VPS13A-213ENST00000539950 COX7BP24311 80 aa-0.4□□□□□ -2.47
VPS13A-213ENST00000539950 FAUP35544 74 aaKnown RBP-0.4□□□□□ -2.47
VPS13A-213ENST00000539950 WFDC13Q8IUB5 93 aa-0.4□□□□□ -2.47
VPS13A-213ENST00000539950 SONP18583 2426 aaKnown RBP-0.4□□□□□ -2.47
VPS13A-213ENST00000539950 TRANK1O15050 2925 aa-0.41□□□□□ -2.47
VPS13A-213ENST00000539950 NF1P21359 2839 aa-0.41□□□□□ -2.47
Retrieved 100 of 20,778 RNA–protein pairs in 134.3 ms