RNA–Protein interactions for RNA: ENST00000531110.5

CD44-231, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 749 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-231ENST00000531110 IGHV1-8P0DP01 117 aa3.46□□□□□ -1.86
CD44-231ENST00000531110 EGFEM1PQ0D2K5 195 aa3.46□□□□□ -1.86
CD44-231ENST00000531110 DEFB112Q30KQ8 113 aa3.46□□□□□ -1.86
CD44-231ENST00000531110 KRTAP26-1Q6PEX3 210 aa3.46□□□□□ -1.86
CD44-231ENST00000531110 LYPD2Q6UXB3 125 aa3.46□□□□□ -1.86
CD44-231ENST00000531110 DEC1Q9P2X7 70 aa3.46□□□□□ -1.86
CD44-231ENST00000531110 FAM215AQ9Y5M1 114 aa3.46□□□□□ -1.86
CD44-231ENST00000531110 LINC00959A0A1B0GUT2 108 aa3.45□□□□□ -1.86
CD44-231ENST00000531110 PRB4P10163 310 aaPredicted RBP3.45□□□□□ -1.86
CD44-231ENST00000531110 REG3AQ06141 175 aa3.45□□□□□ -1.86
CD44-231ENST00000531110 DEFB110Q30KQ9 67 aa3.45□□□□□ -1.86
CD44-231ENST00000531110 LINC00483Q53H64 154 aa3.45□□□□□ -1.86
CD44-231ENST00000531110 PRR9Q5T870 116 aa3.45□□□□□ -1.86
CD44-231ENST00000531110 KMT2BQ9UMN6 2715 aaPredicted RBP3.45□□□□□ -1.86
CD44-231ENST00000531110 SEC16AO15027 2179 aa3.45□□□□□ -1.86
CD44-231ENST00000531110 CNTRLQ7Z7A1 2325 aa3.44□□□□□ -1.86
CD44-231ENST00000531110 CEP350Q5VT06 3117 aa3.44□□□□□ -1.86
CD44-231ENST00000531110 IGKV2D-24A0A075B6R9 120 aa3.44□□□□□ -1.86
CD44-231ENST00000531110 M0R2N4 97 aa3.44□□□□□ -1.86
CD44-231ENST00000531110 IGLV6-57P01721 117 aa3.44□□□□□ -1.86
CD44-231ENST00000531110 GIG44P09565 113 aaPredicted RBP3.44□□□□□ -1.86
CD44-231ENST00000531110 ADM2Q7Z4H4 148 aa3.44□□□□□ -1.86
CD44-231ENST00000531110 Q8IZM0 81 aa3.44□□□□□ -1.86
CD44-231ENST00000531110 PTPRQQ9UMZ3 2332 aa3.43□□□□□ -1.86
CD44-231ENST00000531110 COX6A2Q02221 97 aa3.43□□□□□ -1.86
CD44-231ENST00000531110 C20orf166-AS1Q96NR2 134 aa3.43□□□□□ -1.86
CD44-231ENST00000531110 C8orf17Q9NRJ1 99 aa3.43□□□□□ -1.86
CD44-231ENST00000531110 KAAG1Q9UBP8 84 aa3.43□□□□□ -1.86
CD44-231ENST00000531110 ZNF861PO60384 105 aa3.42□□□□□ -1.86
CD44-231ENST00000531110 CAMK2N1Q7Z7J9 78 aa3.42□□□□□ -1.86
CD44-231ENST00000531110 ST20-AS1Q8NBB2 130 aa3.42□□□□□ -1.86
CD44-231ENST00000531110 C7orf33Q8WU49 177 aa3.42□□□□□ -1.86
CD44-231ENST00000531110 TP53AIP1Q9HCN2 124 aa3.42□□□□□ -1.86
CD44-231ENST00000531110 ATRXP46100 2492 aa3.42□□□□□ -1.86
CD44-231ENST00000531110 BRWD1Q9NSI6 2320 aa3.41□□□□□ -1.86
CD44-231ENST00000531110 A8MWP4 228 aa3.41□□□□□ -1.86
CD44-231ENST00000531110 NUPR2A6NF83 97 aa3.4□□□□□ -1.87
CD44-231ENST00000531110 ODF3BA8MYP8 253 aa3.4□□□□□ -1.87
CD44-231ENST00000531110 TFF1P04155 84 aa3.4□□□□□ -1.87
CD44-231ENST00000531110 P0C880 135 aa3.4□□□□□ -1.87
CD44-231ENST00000531110 CCL3L1P16619 93 aa3.4□□□□□ -1.87
CD44-231ENST00000531110 LUZP6Q538Z0 58 aa3.4□□□□□ -1.87
CD44-231ENST00000531110 ANAPC11Q9NYG5 84 aa3.4□□□□□ -1.87
CD44-231ENST00000531110 A6NDX4 124 aa3.39□□□□□ -1.87
CD44-231ENST00000531110 LCE3EQ5T5B0 92 aa3.39□□□□□ -1.87
CD44-231ENST00000531110 Q8N9W7 124 aa3.39□□□□□ -1.87
CD44-231ENST00000531110 EP400Q96L91 3159 aa3.39□□□□□ -1.87
CD44-231ENST00000531110 SPTY2D1-AS1A0A0U1RR47 76 aa3.38□□□□□ -1.87
CD44-231ENST00000531110 MINOS1Q5TGZ0 78 aa3.38□□□□□ -1.87
CD44-231ENST00000531110 Q5W150 140 aa3.38□□□□□ -1.87
CD44-231ENST00000531110 TMEM105Q8N8V8 129 aa3.38□□□□□ -1.87
CD44-231ENST00000531110 A0A0C4DFX4 3053 aa3.38□□□□□ -1.87
CD44-231ENST00000531110 PLCE1Q9P212 2302 aa3.38□□□□□ -1.87
CD44-231ENST00000531110 A8MTW9 85 aa3.37□□□□□ -1.87
CD44-231ENST00000531110 CMC4P56277 68 aaPredicted RBP3.37□□□□□ -1.87
CD44-231ENST00000531110 Q8N9L7 120 aa3.37□□□□□ -1.87
CD44-231ENST00000531110 LYNX1G3V0Z9 82 aa3.36□□□□□ -1.87
CD44-231ENST00000531110 URB1O60287 2271 aaKnown RBP3.36□□□□□ -1.87
CD44-231ENST00000531110 IGKV3-7A0A075B6H7 116 aa3.35□□□□□ -1.87
CD44-231ENST00000531110 GVQW2A0A096LPI5 108 aaPredicted RBP3.35□□□□□ -1.87
CD44-231ENST00000531110 H3BUA1 57 aa3.35□□□□□ -1.87
CD44-231ENST00000531110 HRES1P13985 223 aa3.35□□□□□ -1.87
CD44-231ENST00000531110 KRTAP12-2P59991 146 aa3.35□□□□□ -1.87
CD44-231ENST00000531110 KLK12Q9UKR0 248 aa3.35□□□□□ -1.87
CD44-231ENST00000531110 PATE1Q8WXA2 126 aa3.34□□□□□ -1.87
CD44-231ENST00000531110 IGLV8-61A0A075B6I0 122 aa3.33□□□□□ -1.88
CD44-231ENST00000531110 TRGV1A0A0A0MS02 117 aa3.33□□□□□ -1.88
CD44-231ENST00000531110 A0A1B0GU69 56 aa3.33□□□□□ -1.88
CD44-231ENST00000531110 K7EQZ3 153 aa3.33□□□□□ -1.88
CD44-231ENST00000531110 ACYP2P14621 99 aa3.33□□□□□ -1.88
CD44-231ENST00000531110 ASCC3Q8N3C0 2202 aaKnown RBP3.32□□□□□ -1.88
CD44-231ENST00000531110 A8MUU9 505 aa3.32□□□□□ -1.88
CD44-231ENST00000531110 ANGP03950 147 aaKnown RBP3.32□□□□□ -1.88
CD44-231ENST00000531110 DEFB113Q30KQ7 82 aa3.32□□□□□ -1.88
CD44-231ENST00000531110 DEFB132Q7Z7B7 95 aa3.32□□□□□ -1.88
CD44-231ENST00000531110 ZNRD1Q9P1U0 126 aa3.32□□□□□ -1.88
CD44-231ENST00000531110 ASXL3Q9C0F0 2248 aa3.32□□□□□ -1.88
CD44-231ENST00000531110 MED13LQ71F56 2210 aa3.31□□□□□ -1.88
CD44-231ENST00000531110 KRTAP5-1Q6L8H4 278 aa3.31□□□□□ -1.88
CD44-231ENST00000531110 C4orf3Q8WVX3 66 aa3.31□□□□□ -1.88
CD44-231ENST00000531110 USMG5Q96IX5 58 aa3.31□□□□□ -1.88
CD44-231ENST00000531110 LINC00472Q9H8W2 130 aa3.31□□□□□ -1.88
CD44-231ENST00000531110 MINOS1-NBL1R4GNA1 71 aa3.31□□□□□ -1.88
CD44-231ENST00000531110 SORL1Q92673 2214 aa3.31□□□□□ -1.88
CD44-231ENST00000531110 IGKV3OR2-268A0A0C4DH90 116 aa3.3□□□□□ -1.88
CD44-231ENST00000531110 A0A1W2PNU3 283 aaPredicted RBP3.3□□□□□ -1.88
CD44-231ENST00000531110 IGLV7-43P04211 117 aa3.3□□□□□ -1.88
CD44-231ENST00000531110 TLX1NBP0CAT3 122 aa3.3□□□□□ -1.88
CD44-231ENST00000531110 DEFB131AP59861 70 aa3.3□□□□□ -1.88
CD44-231ENST00000531110 KNL1Q8NG31 2342 aa3.3□□□□□ -1.88
CD44-231ENST00000531110 ABCA1O95477 2261 aa3.3□□□□□ -1.88
CD44-231ENST00000531110 C15orf56Q8N910 161 aa3.29□□□□□ -1.88
CD44-231ENST00000531110 TOMM7Q9P0U1 55 aa3.29□□□□□ -1.88
CD44-231ENST00000531110 UTRNP46939 3433 aa3.29□□□□□ -1.88
CD44-231ENST00000531110 CACNA1GO43497 2377 aa3.28□□□□□ -1.88
CD44-231ENST00000531110 A0A1B0GVX0 72 aa3.28□□□□□ -1.88
CD44-231ENST00000531110 PANO1I0J062 215 aa3.28□□□□□ -1.88
CD44-231ENST00000531110 IGKV2-24A0A0C4DH68 120 aa3.27□□□□□ -1.89
CD44-231ENST00000531110 APELAP0DMC3 54 aa3.27□□□□□ -1.89
CD44-231ENST00000531110 A0A087WTM6 91 aa3.25□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 106.2 ms