RNA–Protein interactions for RNA: ENST00000503360.1

HMGB1P35-201, Transcript of high mobility group box 1 pseudogene 35, humanhuman

BASIC

Gene HMGB1P35, Length 598 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P35-201ENST00000503360 GAFA1Q96PS6 74 aa0.65□□□□□ -2.31
HMGB1P35-201ENST00000503360 ANKRD17O75179 2603 aaKnown RBP0.65□□□□□ -2.31
HMGB1P35-201ENST00000503360 SLIT1O75093 1534 aa0.64□□□□□ -2.31
HMGB1P35-201ENST00000503360 DUOX2Q9NRD8 1548 aa0.64□□□□□ -2.31
HMGB1P35-201ENST00000503360 TULP4Q9NRJ4 1543 aa0.64□□□□□ -2.31
HMGB1P35-201ENST00000503360 JMJD1CQ15652 2540 aa0.64□□□□□ -2.31
HMGB1P35-201ENST00000503360 TRAV21A0A0B4J279 112 aa0.64□□□□□ -2.31
HMGB1P35-201ENST00000503360 USMG5Q96IX5 58 aa0.64□□□□□ -2.31
HMGB1P35-201ENST00000503360 FAM103A1Q9BTL3 118 aaKnown RBP0.64□□□□□ -2.31
HMGB1P35-201ENST00000503360 ASXL3Q9C0F0 2248 aa0.64□□□□□ -2.31
HMGB1P35-201ENST00000503360 POLR1AO95602 1720 aaPredicted RBP0.64□□□□□ -2.31
HMGB1P35-201ENST00000503360 NAV3Q8IVL0 2385 aa0.63□□□□□ -2.31
HMGB1P35-201ENST00000503360 WIZO95785 1651 aa0.63□□□□□ -2.31
HMGB1P35-201ENST00000503360 PLCH1Q4KWH8 1693 aa0.63□□□□□ -2.31
HMGB1P35-201ENST00000503360 I3L2K1 104 aa0.63□□□□□ -2.31
HMGB1P35-201ENST00000503360 RPL38P63173 70 aaKnown RBP0.63□□□□□ -2.31
HMGB1P35-201ENST00000503360 DEFB123Q8N688 67 aa0.63□□□□□ -2.31
HMGB1P35-201ENST00000503360 WFDC9Q8NEX5 89 aa0.63□□□□□ -2.31
HMGB1P35-201ENST00000503360 CRIPTQ9P021 101 aa0.63□□□□□ -2.31
HMGB1P35-201ENST00000503360 QSER1Q2KHR3 1735 aa0.63□□□□□ -2.31
HMGB1P35-201ENST00000503360 KIAA0556O60303 1618 aa0.63□□□□□ -2.31
HMGB1P35-201ENST00000503360 ABCA9Q8IUA7 1624 aa0.63□□□□□ -2.31
HMGB1P35-201ENST00000503360 EFCAB5A4FU69 1503 aa0.63□□□□□ -2.31
HMGB1P35-201ENST00000503360 BCORQ6W2J9 1755 aa0.62□□□□□ -2.31
HMGB1P35-201ENST00000503360 CFAP43Q8NDM7 1665 aa0.62□□□□□ -2.31
HMGB1P35-201ENST00000503360 SPTY2D1-AS1A0A0U1RR47 76 aa0.62□□□□□ -2.31
HMGB1P35-201ENST00000503360 IFI6P09912 130 aa0.62□□□□□ -2.31
HMGB1P35-201ENST00000503360 COX7BP24311 80 aa0.62□□□□□ -2.31
HMGB1P35-201ENST00000503360 Q8IZM0 81 aa0.62□□□□□ -2.31
HMGB1P35-201ENST00000503360 PRO0255Q9UI72 69 aa0.62□□□□□ -2.31
HMGB1P35-201ENST00000503360 PAPPAQ13219 1627 aa0.62□□□□□ -2.31
HMGB1P35-201ENST00000503360 ASXL1Q8IXJ9 1541 aa0.62□□□□□ -2.31
HMGB1P35-201ENST00000503360 COL14A1Q05707 1796 aaKnown RBP0.62□□□□□ -2.31
HMGB1P35-201ENST00000503360 CDC42BPGQ6DT37 1551 aa0.62□□□□□ -2.31
HMGB1P35-201ENST00000503360 LRRC37AA6NMS7 1700 aa0.61□□□□□ -2.31
HMGB1P35-201ENST00000503360 TIAM2Q8IVF5 1701 aa0.61□□□□□ -2.31
HMGB1P35-201ENST00000503360 AHCTF1Q8WYP5 2266 aa0.61□□□□□ -2.31
HMGB1P35-201ENST00000503360 H3BVH4 76 aa0.61□□□□□ -2.31
HMGB1P35-201ENST00000503360 I3L3M4 83 aa0.61□□□□□ -2.31
HMGB1P35-201ENST00000503360 KIF1AQ12756 1690 aa0.61□□□□□ -2.31
HMGB1P35-201ENST00000503360 TIAM1Q13009 1591 aa0.61□□□□□ -2.31
HMGB1P35-201ENST00000503360 FAM208BQ5VWN6 2430 aa0.6□□□□□ -2.31
HMGB1P35-201ENST00000503360 CCDC180Q9P1Z9 1646 aa0.6□□□□□ -2.31
HMGB1P35-201ENST00000503360 LRRC7Q96NW7 1537 aa0.6□□□□□ -2.31
HMGB1P35-201ENST00000503360 GOLGA4Q13439 2230 aaKnown RBP0.6□□□□□ -2.31
HMGB1P35-201ENST00000503360 NHSQ6T4R5 1651 aa0.6□□□□□ -2.31
HMGB1P35-201ENST00000503360 A0A087WWC5 75 aa0.6□□□□□ -2.31
HMGB1P35-201ENST00000503360 COX8AP10176 69 aa0.6□□□□□ -2.31
HMGB1P35-201ENST00000503360 NREPQ16612 68 aa0.6□□□□□ -2.31
HMGB1P35-201ENST00000503360 ANKRD50Q9ULJ7 1429 aa0.6□□□□□ -2.31
HMGB1P35-201ENST00000503360 DOT1LQ8TEK3 1739 aa0.6□□□□□ -2.31
HMGB1P35-201ENST00000503360 UBR3Q6ZT12 1888 aa0.59□□□□□ -2.31
HMGB1P35-201ENST00000503360 ASH1LQ9NR48 2969 aaKnown RBP0.59□□□□□ -2.31
HMGB1P35-201ENST00000503360 FXYD6-FXYD2A0A087WZ82 144 aa0.59□□□□□ -2.31
HMGB1P35-201ENST00000503360 LCE6AA0A183 80 aa0.59□□□□□ -2.31
HMGB1P35-201ENST00000503360 CPSF4LA6NMK7 179 aaKnown RBP0.59□□□□□ -2.31
HMGB1P35-201ENST00000503360 K7EQZ3 153 aa0.59□□□□□ -2.31
HMGB1P35-201ENST00000503360 COX6B1P14854 86 aa0.59□□□□□ -2.31
HMGB1P35-201ENST00000503360 ATXN8Q156A1 80 aa0.59□□□□□ -2.31
HMGB1P35-201ENST00000503360 S100ZQ8WXG8 99 aa0.59□□□□□ -2.31
HMGB1P35-201ENST00000503360 PREX2Q70Z35 1606 aa0.59□□□□□ -2.32
HMGB1P35-201ENST00000503360 HFM1A2PYH4 1435 aa0.58□□□□□ -2.32
HMGB1P35-201ENST00000503360 PRB3Q04118 309 aaPredicted RBP0.58□□□□□ -2.32
HMGB1P35-201ENST00000503360 RALGAPBQ86X10 1494 aa0.58□□□□□ -2.32
HMGB1P35-201ENST00000503360 LMTK2Q8IWU2 1503 aa0.58□□□□□ -2.32
HMGB1P35-201ENST00000503360 GLI2P10070 1586 aa0.57□□□□□ -2.32
HMGB1P35-201ENST00000503360 CCL22O00626 93 aa0.57□□□□□ -2.32
HMGB1P35-201ENST00000503360 Q5VSD8 79 aa0.57□□□□□ -2.32
HMGB1P35-201ENST00000503360 GNG13Q9P2W3 67 aa0.57□□□□□ -2.32
HMGB1P35-201ENST00000503360 HILPDAQ9Y5L2 63 aa0.57□□□□□ -2.32
HMGB1P35-201ENST00000503360 NRAPQ86VF7 1730 aa0.57□□□□□ -2.32
HMGB1P35-201ENST00000503360 ABCA6Q8N139 1617 aa0.56□□□□□ -2.32
HMGB1P35-201ENST00000503360 RNF17Q9BXT8 1623 aaKnown RBP0.56□□□□□ -2.32
HMGB1P35-201ENST00000503360 RICTORQ6R327 1708 aa0.56□□□□□ -2.32
HMGB1P35-201ENST00000503360 MRPL34Q9BQ48 92 aaKnown RBP0.56□□□□□ -2.32
HMGB1P35-201ENST00000503360 TSC2P49815 1807 aa0.56□□□□□ -2.32
HMGB1P35-201ENST00000503360 DIP2AQ14689 1571 aa0.56□□□□□ -2.32
HMGB1P35-201ENST00000503360 MAST1Q9Y2H9 1570 aa0.56□□□□□ -2.32
HMGB1P35-201ENST00000503360 ZNF462Q96JM2 2506 aa0.56□□□□□ -2.32
HMGB1P35-201ENST00000503360 MUC5ACP98088 5654 aa0.55□□□□□ -2.32
HMGB1P35-201ENST00000503360 NDUFA4O00483 81 aa0.55□□□□□ -2.32
HMGB1P35-201ENST00000503360 COX6B2Q6YFQ2 88 aa0.55□□□□□ -2.32
HMGB1P35-201ENST00000503360 BIVM-ERCC5R4GMW8 1640 aa0.55□□□□□ -2.32
HMGB1P35-201ENST00000503360 PLCE1Q9P212 2302 aa0.55□□□□□ -2.32
HMGB1P35-201ENST00000503360 PREX1Q8TCU6 1659 aa0.55□□□□□ -2.32
HMGB1P35-201ENST00000503360 CACNA1HO95180 2353 aa0.55□□□□□ -2.32
HMGB1P35-201ENST00000503360 NWD1Q149M9 1564 aa0.54□□□□□ -2.32
HMGB1P35-201ENST00000503360 NESP48681 1621 aa0.54□□□□□ -2.32
HMGB1P35-201ENST00000503360 ALS2Q96Q42 1657 aa0.54□□□□□ -2.32
HMGB1P35-201ENST00000503360 ITSN2Q9NZM3 1697 aa0.54□□□□□ -2.32
HMGB1P35-201ENST00000503360 C3orf79P0CE67 100 aa0.54□□□□□ -2.32
HMGB1P35-201ENST00000503360 SPRR1BP22528 89 aa0.54□□□□□ -2.32
HMGB1P35-201ENST00000503360 SPRR1AP35321 89 aa0.54□□□□□ -2.32
HMGB1P35-201ENST00000503360 DOPEY2Q9Y3R5 2298 aa0.54□□□□□ -2.32
HMGB1P35-201ENST00000503360 ABCC6O95255 1503 aa0.54□□□□□ -2.32
HMGB1P35-201ENST00000503360 PLXNC1O60486 1568 aa0.53□□□□□ -2.32
HMGB1P35-201ENST00000503360 MEGF8Q7Z7M0 2845 aa0.53□□□□□ -2.32
HMGB1P35-201ENST00000503360 LY75O60449 1722 aa0.53□□□□□ -2.32
HMGB1P35-201ENST00000503360 FMN2Q9NZ56 1722 aa0.53□□□□□ -2.32
HMGB1P35-201ENST00000503360 SFTA3P0C7M3 94 aa0.53□□□□□ -2.32
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms