RNA–Protein interactions for RNA: ENST00000490193.5

USP39-216, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 5

Gene USP39, Length 1,028 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-216ENST00000490193 RPL23P62829 140 aaKnown RBP4.69□□□□□ -1.66
USP39-216ENST00000490193 VAMP3Q15836 100 aa4.69□□□□□ -1.66
USP39-216ENST00000490193 ALKAL2Q6UX46 152 aa4.69□□□□□ -1.66
USP39-216ENST00000490193 C2orf66Q6UXQ4 117 aa4.69□□□□□ -1.66
USP39-216ENST00000490193 VPS25Q9BRG1 176 aa4.69□□□□□ -1.66
USP39-216ENST00000490193 PPDPFQ9H3Y8 114 aa4.69□□□□□ -1.66
USP39-216ENST00000490193 IGKV2D-26A0A0A0MRZ7 120 aa4.68□□□□□ -1.66
USP39-216ENST00000490193 UBE2AP49459 152 aa4.68□□□□□ -1.66
USP39-216ENST00000490193 ASB16-AS1Q495Z4 193 aa4.68□□□□□ -1.66
USP39-216ENST00000490193 FP248Q71RG6 208 aaPredicted RBP4.68□□□□□ -1.66
USP39-216ENST00000490193 COMMD7Q86VX2 200 aa4.68□□□□□ -1.66
USP39-216ENST00000490193 ORMDL3Q8N138 153 aa4.68□□□□□ -1.66
USP39-216ENST00000490193 TSTD3H0UI37 97 aa4.67□□□□□ -1.66
USP39-216ENST00000490193 DDTP30046 118 aa4.67□□□□□ -1.66
USP39-216ENST00000490193 HERVK_113P63121 156 aa4.67□□□□□ -1.66
USP39-216ENST00000490193 SEC11AP67812 179 aa4.67□□□□□ -1.66
USP39-216ENST00000490193 PNRC1Q12796 327 aaPredicted RBP4.67□□□□□ -1.66
USP39-216ENST00000490193 ZC2HC1BQ5TFG8 222 aa4.67□□□□□ -1.66
USP39-216ENST00000490193 MRPL54Q6P161 138 aaKnown RBP4.67□□□□□ -1.66
USP39-216ENST00000490193 PRELID3AQ96N28 172 aa4.67□□□□□ -1.66
USP39-216ENST00000490193 MAP1LC3CQ9BXW4 147 aa4.67□□□□□ -1.66
USP39-216ENST00000490193 CDKN2A-AS1Q9UH64 79 aa4.67□□□□□ -1.66
USP39-216ENST00000490193 CYSLTR1Q9Y271 337 aa4.67□□□□□ -1.66
USP39-216ENST00000490193 LAMTOR2Q9Y2Q5 125 aa4.67□□□□□ -1.66
USP39-216ENST00000490193 IGIPA6NJ69 53 aa4.66□□□□□ -1.66
USP39-216ENST00000490193 ADIRFQ15847 76 aa4.66□□□□□ -1.66
USP39-216ENST00000490193 KRTAP13-3Q3SY46 172 aa4.66□□□□□ -1.66
USP39-216ENST00000490193 SPAG11AQ6PDA7 123 aa4.66□□□□□ -1.66
USP39-216ENST00000490193 TMEM136Q6ZRR5 245 aa4.66□□□□□ -1.66
USP39-216ENST00000490193 MTURNQ8N3F0 131 aa4.66□□□□□ -1.66
USP39-216ENST00000490193 NAT8Q9UHE5 227 aa4.66□□□□□ -1.66
USP39-216ENST00000490193 K7EMI3 77 aa4.65□□□□□ -1.67
USP39-216ENST00000490193 UQCC3Q6UW78 93 aa4.65□□□□□ -1.67
USP39-216ENST00000490193 ATP5L2Q7Z4Y8 100 aa4.65□□□□□ -1.67
USP39-216ENST00000490193 NKAPP1Q8N9T2 125 aa4.65□□□□□ -1.67
USP39-216ENST00000490193 KRTAP4-1Q9BYQ7 146 aa4.65□□□□□ -1.67
USP39-216ENST00000490193 SMIM1B2RUZ4 78 aa4.64□□□□□ -1.67
USP39-216ENST00000490193 ORMDL2Q53FV1 153 aa4.64□□□□□ -1.67
USP39-216ENST00000490193 PAPPA-AS1Q5QFB9 102 aa4.64□□□□□ -1.67
USP39-216ENST00000490193 C3orf22Q8N5N4 141 aa4.64□□□□□ -1.67
USP39-216ENST00000490193 Q8N8P6 123 aa4.64□□□□□ -1.67
USP39-216ENST00000490193 MAP1LC3AQ9H492 121 aa4.64□□□□□ -1.67
USP39-216ENST00000490193 IGKV2-28A0A075B6P5 120 aa4.63□□□□□ -1.67
USP39-216ENST00000490193 IGKV2D-28P01615 120 aa4.63□□□□□ -1.67
USP39-216ENST00000490193 PRLHP81277 87 aa4.63□□□□□ -1.67
USP39-216ENST00000490193 PDZD11Q5EBL8 140 aa4.63□□□□□ -1.67
USP39-216ENST00000490193 LINC00337Q8N6G1 96 aa4.63□□□□□ -1.67
USP39-216ENST00000490193 PLEKHB2Q96CS7 222 aa4.63□□□□□ -1.67
USP39-216ENST00000490193 TIMM17AQ99595 171 aa4.63□□□□□ -1.67
USP39-216ENST00000490193 GNB1LQ9BYB4 327 aa4.63□□□□□ -1.67
USP39-216ENST00000490193 TMEM126AQ9H061 195 aa4.63□□□□□ -1.67
USP39-216ENST00000490193 IGLV5-45A0A087WSX0 123 aa4.62□□□□□ -1.67
USP39-216ENST00000490193 LOC389332A0A1B0GUA5 103 aa4.62□□□□□ -1.67
USP39-216ENST00000490193 C9JQL5 133 aa4.62□□□□□ -1.67
USP39-216ENST00000490193 SEC61BP60468 96 aaKnown RBP4.62□□□□□ -1.67
USP39-216ENST00000490193 COX7B2Q8TF08 81 aa4.62□□□□□ -1.67
USP39-216ENST00000490193 TINCRA0A1B0GVN0 87 aa4.61□□□□□ -1.67
USP39-216ENST00000490193 VPREB1P12018 145 aa4.61□□□□□ -1.67
USP39-216ENST00000490193 FAM19A1Q7Z5A9 133 aa4.61□□□□□ -1.67
USP39-216ENST00000490193 M0R378 163 aa4.6□□□□□ -1.67
USP39-216ENST00000490193 CBLN2Q8IUK8 224 aa4.6□□□□□ -1.67
USP39-216ENST00000490193 TOMM6Q96B49 74 aa4.6□□□□□ -1.67
USP39-216ENST00000490193 NXT2Q9NPJ8 142 aaKnown RBP4.6□□□□□ -1.67
USP39-216ENST00000490193 M0R143 59 aa4.59□□□□□ -1.67
USP39-216ENST00000490193 RAB5BP61020 215 aa4.59□□□□□ -1.67
USP39-216ENST00000490193 SPRR4Q96PI1 79 aa4.59□□□□□ -1.67
USP39-216ENST00000490193 SS18L2Q9UHA2 77 aa4.59□□□□□ -1.67
USP39-216ENST00000490193 ATP5LO75964 103 aa4.58□□□□□ -1.68
USP39-216ENST00000490193 SPINK1P00995 79 aa4.58□□□□□ -1.68
USP39-216ENST00000490193 PEA15Q15121 130 aa4.58□□□□□ -1.68
USP39-216ENST00000490193 SMIM20Q8N5G0 67 aa4.58□□□□□ -1.68
USP39-216ENST00000490193 C20orf202A1L168 122 aa4.57□□□□□ -1.68
USP39-216ENST00000490193 SPINK8P0C7L1 97 aa4.57□□□□□ -1.68
USP39-216ENST00000490193 RPS29P62273 56 aaKnown RBP4.57□□□□□ -1.68
USP39-216ENST00000490193 SNRPEP62304 92 aaKnown RBP4.57□□□□□ -1.68
USP39-216ENST00000490193 RPL24P83731 157 aaKnown RBP4.57□□□□□ -1.68
USP39-216ENST00000490193 KRTAP19-2Q3LHN2 52 aa4.57□□□□□ -1.68
USP39-216ENST00000490193 CLLU1Q5K131 121 aa4.57□□□□□ -1.68
USP39-216ENST00000490193 Q8NBF4 154 aa4.57□□□□□ -1.68
USP39-216ENST00000490193 HIGD2AQ9BW72 106 aa4.57□□□□□ -1.68
USP39-216ENST00000490193 SND1-IT1Q9HBX3 110 aa4.57□□□□□ -1.68
USP39-216ENST00000490193 ZNF706Q9Y5V0 76 aaPredicted RBP4.57□□□□□ -1.68
USP39-216ENST00000490193 LINC01549A6NIU2 74 aa4.56□□□□□ -1.68
USP39-216ENST00000490193 CFC1BP0CG36 223 aa4.56□□□□□ -1.68
USP39-216ENST00000490193 COX17Q14061 63 aa4.56□□□□□ -1.68
USP39-216ENST00000490193 DAND5Q8N907 189 aa4.56□□□□□ -1.68
USP39-216ENST00000490193 Q8NDZ9 215 aa4.56□□□□□ -1.68
USP39-216ENST00000490193 SCGB3A1Q96QR1 104 aa4.56□□□□□ -1.68
USP39-216ENST00000490193 V9GYY9 64 aa4.56□□□□□ -1.68
USP39-216ENST00000490193 IGLV5-39A0A0G2JS06 123 aa4.55□□□□□ -1.68
USP39-216ENST00000490193 K7ERU9 68 aa4.55□□□□□ -1.68
USP39-216ENST00000490193 ADCYAP1P18509 176 aa4.55□□□□□ -1.68
USP39-216ENST00000490193 PFN2P35080 140 aa4.55□□□□□ -1.68
USP39-216ENST00000490193 MT1HP80294 61 aa4.55□□□□□ -1.68
USP39-216ENST00000490193 OCIAD2Q56VL3 154 aa4.55□□□□□ -1.68
USP39-216ENST00000490193 FAM19A2Q8N3H0 131 aa4.55□□□□□ -1.68
USP39-216ENST00000490193 SNHG12Q9BXW3 62 aa4.55□□□□□ -1.68
USP39-216ENST00000490193 CST9LQ9H4G1 147 aa4.55□□□□□ -1.68
USP39-216ENST00000490193 NDUFA12Q9UI09 145 aa4.55□□□□□ -1.68
USP39-216ENST00000490193 ERG28Q9UKR5 140 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 124.1 ms