RNA–Protein interactions for RNA: ENST00000479544.6

USP42-206, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 1 (best)

Gene USP42, Length 4,286 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-206ENST00000479544 FLNCQ14315 2725 aa9.49□□□□□ -0.89
USP42-206ENST00000479544 FAM30AQ9NZY2 134 aa9.49□□□□□ -0.89
USP42-206ENST00000479544 Q6ZVQ6 151 aa9.48□□□□□ -0.89
USP42-206ENST00000479544 FHL2Q14192 279 aa9.48□□□□□ -0.89
USP42-206ENST00000479544 SMIM26A0A096LP01 95 aa9.48□□□□□ -0.89
USP42-206ENST00000479544 FAM19A3Q7Z5A8 133 aa9.48□□□□□ -0.89
USP42-206ENST00000479544 BRI3O95415 125 aa9.47□□□□□ -0.89
USP42-206ENST00000479544 IGLV5-45A0A087WSX0 123 aa9.47□□□□□ -0.89
USP42-206ENST00000479544 ZNF73O43830 326 aaPredicted RBP9.47□□□□□ -0.89
USP42-206ENST00000479544 LINC01547P58512 204 aaPredicted RBP9.47□□□□□ -0.89
USP42-206ENST00000479544 LINC01561Q8N1V8 128 aa9.46□□□□□ -0.89
USP42-206ENST00000479544 DMDP11532 3685 aa9.46□□□□□ -0.9
USP42-206ENST00000479544 NOTCH1P46531 2555 aa9.45□□□□□ -0.9
USP42-206ENST00000479544 RPL37AP8A6NKH3 93 aa9.45□□□□□ -0.9
USP42-206ENST00000479544 SERP1Q9Y6X1 66 aa9.45□□□□□ -0.9
USP42-206ENST00000479544 IGKV2-24A0A0C4DH68 120 aa9.45□□□□□ -0.9
USP42-206ENST00000479544 A0A0J9YWU9 116 aa9.45□□□□□ -0.9
USP42-206ENST00000479544 NDUFS5O43920 106 aa9.45□□□□□ -0.9
USP42-206ENST00000479544 WFDC13Q8IUB5 93 aa9.45□□□□□ -0.9
USP42-206ENST00000479544 HIGD2AQ9BW72 106 aa9.45□□□□□ -0.9
USP42-206ENST00000479544 TEX15Q9BXT5 2789 aa9.44□□□□□ -0.9
USP42-206ENST00000479544 MP68P56378 58 aa9.44□□□□□ -0.9
USP42-206ENST00000479544 KRTAP21-3Q3LHN1 58 aa9.44□□□□□ -0.9
USP42-206ENST00000479544 WFDC10BQ8IUB3 73 aa9.44□□□□□ -0.9
USP42-206ENST00000479544 LAMA5O15230 3695 aa9.44□□□□□ -0.9
USP42-206ENST00000479544 UBR5O95071 2799 aaPredicted RBP9.43□□□□□ -0.9
USP42-206ENST00000479544 ZANQ9Y493 2812 aa9.43□□□□□ -0.9
USP42-206ENST00000479544 TRAV10A0A0B4J240 114 aa9.42□□□□□ -0.9
USP42-206ENST00000479544 C1orf195Q5TG92 126 aa9.42□□□□□ -0.9
USP42-206ENST00000479544 V9GYY9 64 aa9.41□□□□□ -0.9
USP42-206ENST00000479544 LY6G6DO95868 133 aa9.41□□□□□ -0.9
USP42-206ENST00000479544 C9orf66Q5T8R8 295 aa9.41□□□□□ -0.9
USP42-206ENST00000479544 LINC00575Q6W349 94 aa9.41□□□□□ -0.9
USP42-206ENST00000479544 PSPHP1O15172 72 aa9.4□□□□□ -0.9
USP42-206ENST00000479544 UBE2DNLQ8IWF7 75 aa9.4□□□□□ -0.9
USP42-206ENST00000479544 TMEM254Q8TBM7 123 aa9.4□□□□□ -0.9
USP42-206ENST00000479544 MUC7Q8TAX7 377 aa9.4□□□□□ -0.91
USP42-206ENST00000479544 TRBV7-6A0A0J9YX20 115 aa9.39□□□□□ -0.91
USP42-206ENST00000479544 CDK2AP2O75956 126 aa9.39□□□□□ -0.91
USP42-206ENST00000479544 C10orf25Q5T742 122 aa9.39□□□□□ -0.91
USP42-206ENST00000479544 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9.39□□□□□ -0.91
USP42-206ENST00000479544 RELNP78509 3460 aa9.39□□□□□ -0.91
USP42-206ENST00000479544 DEFB116Q30KQ4 102 aa9.38□□□□□ -0.91
USP42-206ENST00000479544 TENM4Q6N022 2769 aa9.38□□□□□ -0.91
USP42-206ENST00000479544 NBEAL1Q6ZS30 2694 aa9.38□□□□□ -0.91
USP42-206ENST00000479544 NDUFC1O43677 76 aa9.38□□□□□ -0.91
USP42-206ENST00000479544 RPS28P62857 69 aaKnown RBP9.38□□□□□ -0.91
USP42-206ENST00000479544 INAFM1C9JVW0 142 aa9.37□□□□□ -0.91
USP42-206ENST00000479544 TM2D3Q9BRN9 247 aa9.37□□□□□ -0.91
USP42-206ENST00000479544 H0Y9J4 135 aa9.37□□□□□ -0.91
USP42-206ENST00000479544 H3BQ85 93 aa9.36□□□□□ -0.91
USP42-206ENST00000479544 COX17Q14061 63 aa9.36□□□□□ -0.91
USP42-206ENST00000479544 LYRM9A8MSI8 78 aa9.36□□□□□ -0.91
USP42-206ENST00000479544 KLK9Q2XQG4 91 aa9.36□□□□□ -0.91
USP42-206ENST00000479544 CSMD1Q96PZ7 3565 aa9.35□□□□□ -0.91
USP42-206ENST00000479544 SPATA3Q8NHX4 192 aa9.35□□□□□ -0.91
USP42-206ENST00000479544 CUBNO60494 3623 aa9.35□□□□□ -0.91
USP42-206ENST00000479544 SYCNQ0VAF6 134 aa9.35□□□□□ -0.91
USP42-206ENST00000479544 STAB1Q9NY15 2570 aa9.35□□□□□ -0.91
USP42-206ENST00000479544 COL6A5A8TX70 2615 aa9.34□□□□□ -0.91
USP42-206ENST00000479544 LINC00474Q9P2X8 69 aa9.34□□□□□ -0.91
USP42-206ENST00000479544 ITPR2Q14571 2701 aa9.34□□□□□ -0.91
USP42-206ENST00000479544 M0R378 163 aa9.34□□□□□ -0.92
USP42-206ENST00000479544 CYSTM1Q9H1C7 97 aa9.34□□□□□ -0.92
USP42-206ENST00000479544 PRYO14603 147 aa9.33□□□□□ -0.92
USP42-206ENST00000479544 IGLV1-51P01701 117 aa9.33□□□□□ -0.92
USP42-206ENST00000479544 SMR3AQ99954 134 aa9.33□□□□□ -0.92
USP42-206ENST00000479544 UTP20O75691 2785 aaKnown RBP9.32□□□□□ -0.92
USP42-206ENST00000479544 FAM104AQ969W3 186 aa9.32□□□□□ -0.92
USP42-206ENST00000479544 CR1P17927 2039 aa9.32□□□□□ -0.92
USP42-206ENST00000479544 PRO0628Q9UI54 55 aa9.31□□□□□ -0.92
USP42-206ENST00000479544 KPRPQ5T749 579 aaPredicted RBP9.31□□□□□ -0.92
USP42-206ENST00000479544 LELP1Q5T871 98 aa9.31□□□□□ -0.92
USP42-206ENST00000479544 LINC00336Q6ZUF6 198 aa9.3□□□□□ -0.92
USP42-206ENST00000479544 SMG1Q96Q15 3661 aaKnown RBP9.3□□□□□ -0.92
USP42-206ENST00000479544 NF1P21359 2839 aa9.3□□□□□ -0.92
USP42-206ENST00000479544 A0A1B0GUV1 79 aa9.29□□□□□ -0.92
USP42-206ENST00000479544 Q6ZQT0 140 aa9.29□□□□□ -0.92
USP42-206ENST00000479544 C2orf48Q96LS8 159 aa9.29□□□□□ -0.92
USP42-206ENST00000479544 CELSR2Q9HCU4 2923 aa9.29□□□□□ -0.92
USP42-206ENST00000479544 LINC00208Q96KT6 92 aa9.29□□□□□ -0.92
USP42-206ENST00000479544 IGLV2-33A0A075B6J2 118 aaPredicted RBP9.28□□□□□ -0.92
USP42-206ENST00000479544 C1orf137Q5JT78 98 aa9.28□□□□□ -0.92
USP42-206ENST00000479544 CHKB-CPT1BH3BT56 60 aa9.27□□□□□ -0.93
USP42-206ENST00000479544 M0R2N4 97 aa9.27□□□□□ -0.93
USP42-206ENST00000479544 RETNQ9HD89 108 aa9.27□□□□□ -0.93
USP42-206ENST00000479544 FBN2P35556 2912 aa9.27□□□□□ -0.93
USP42-206ENST00000479544 ATP5EP56381 51 aaPredicted RBP9.27□□□□□ -0.93
USP42-206ENST00000479544 Q6ZRU5 148 aa9.26□□□□□ -0.93
USP42-206ENST00000479544 DEFB131BA0A096LNP1 70 aa9.26□□□□□ -0.93
USP42-206ENST00000479544 ESRGQ1W209 222 aa9.25□□□□□ -0.93
USP42-206ENST00000479544 UBE2AP49459 152 aa9.25□□□□□ -0.93
USP42-206ENST00000479544 NDUFB1O75438 58 aa9.25□□□□□ -0.93
USP42-206ENST00000479544 PMAIP1Q13794 54 aa9.25□□□□□ -0.93
USP42-206ENST00000479544 SMIM29Q86T20 159 aa9.25□□□□□ -0.93
USP42-206ENST00000479544 A6NED7 52 aa9.23□□□□□ -0.93
USP42-206ENST00000479544 IGKV4-1P06312 121 aa9.23□□□□□ -0.93
USP42-206ENST00000479544 OXLD1Q5BKU9 147 aa9.22□□□□□ -0.93
USP42-206ENST00000479544 C11orf45Q8TAV5 145 aa9.22□□□□□ -0.93
USP42-206ENST00000479544 C6orf48Q9UBA6 75 aa9.22□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms